mRNA_P-fluviatile_contig11.1226.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1226.1
Unique NamemRNA_P-fluviatile_contig11.1226.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2696621..2697536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size918
Cds size915
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.8473227-CDS-P-fluviatile_contig11:2696620..26975351622815429.8473227-CDS-P-fluviatile_contig11:2696620..2697535Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2696621..2697535 +
1693561819.5764582-CDS-P-fluviatile_contig11:2696620..26975351693561819.5764582-CDS-P-fluviatile_contig11:2696620..2697535Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2696621..2697535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1226.1prot_P-fluviatile_contig11.1226.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2696621..2697535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1226.1

>prot_P-fluviatile_contig11.1226.1 ID=prot_P-fluviatile_contig11.1226.1|Name=mRNA_P-fluviatile_contig11.1226.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=305bp
VRYRFCRHHGCGGHLHFRSHDQCPHTDLGRLCRSRRSMDPPPPSHRSVGR
SSRYDHRWLPSSAVPCPRRCSRRCLSRLSQLRMRASSNAAASAHGRAGRQ
SLLPASLPLLPLLPLRWRWWRRCWCDGPAVVVGPDSRGAAPFSPAAGSRP
PRRRRRTHRRRLDRVARATGRASQLLLQTRSSLPSRRRCSSPKLWCLRPP
VLADGTRGSSAASHYDGGPPCPPSSSRFASGWVAVPVLGAVAVVAWVVRH
PACPFRRPPASCPDSWRYRCRRFPRQTALASQTTEGRAGDLARRAAGQRV
CSVRR
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mRNA from alignment at P-fluviatile_contig11:2696621..2697536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1226.1 ID=mRNA_P-fluviatile_contig11.1226.1|Name=mRNA_P-fluviatile_contig11.1226.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=916bp|location=Sequence derived from alignment at P-fluviatile_contig11:2696621..2697536+ (Porterinema fluviatile SAG_2381)
GTCCGTTACCGTTTTTGCCGACACCACGGCTGCGGAGGCCATTTACACTT
TCGGTCACACGACCAGTGTCCTCACACAGACCTCGGTCGCCTCTGTCGAA
GTCGTCGATCCATGGATCCTCCTCCGCCCAGCCACCGGAGCGTGGGTCGT
TCATCTCGATACGACCACCGTTGGCTGCCATCATCCGCCGTTCCTTGTCC
ACGACGCTGCTCCCGCCGCTGCCTCTCCCGCCTCTCCCAGCTCCGAATGC
GAGCATCGTCGAACGCGGCAGCATCTGCTCATGGTCGCGCCGGCCGGCAA
TCCTTGCTGCCGGCATCGTTGCCGTTGCTGCCGCTGCTGCCTCTGCGGTG
GCGGTGGTGGCGGCGCTGCTGGTGCGATGGTCCTGCTGTCGTCGTCGGAC
CAGACTCTCGAGGTGCAGCCCCCTTCTCTCCTGCCGCCGGTTCTCGTCCT
CCCCGTCGTCGTCGCCGCACTCACCGTCGAAGGCTGGACCGCGTGGCCCG
GGCCACGGGACGCGCCTCTCAGCTTCTTCTGCAGACTCGAAGTTCTCTCC
CGAGTCGCCGACGATGCTCGTCACCGAAGCTGTGGTGTCTTCGTCCTCCT
GTCCTCGCCGACGGGACGAGGGGTTCCAGTGCCGCGTCACACTACGACGG
GGGACCGCCGTGTCCGCCCTCGTCGAGTCGTTTCGCCAGTGGCTGGGTTG
CCGTCCCCGTTCTTGGTGCCGTCGCCGTGGTCGCCTGGGTTGTTCGCCAC
CCCGCGTGTCCATTCCGTCGACCCCCTGCTTCTTGCCCTGATAGCTGGCG
GTACCGCTGCCGTCGCTTTCCCCGTCAGACTGCGTTAGCGAGTCAAACGA
CTGAGGGGAGGGCAGGGGATCTTGCTCGGAGGGCAGCGGGACAGCGGGTT
TGCTCCGTGCGCCGTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:2696621..2697536+

>mRNA_P-fluviatile_contig11.1226.1 ID=mRNA_P-fluviatile_contig11.1226.1|Name=mRNA_P-fluviatile_contig11.1226.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1830bp|location=Sequence derived from alignment at P-fluviatile_contig11:2696621..2697536+ (Porterinema fluviatile SAG_2381)
GTCCGTTACCGTTTTTGCCGACACCACGGCTGCGGAGGCCATTTACACTT
TCGGTCACACGACCAGTGTCCTCACACAGACCTCGGTCGCCTCTGTCGAA
GTCGTCGATCCATGGATCCTCCTCCGCCCAGCCACCGGAGCGTGGGTCGT
TCATCTCGATACGACCACCGTTGGCTGCCATCATCCGCCGTTCCTTGTCC
ACGACGCTGCTCCCGCCGCTGCCTCTCCCGCCTCTCCCAGCTCCGAATGC
GAGCATCGTCGAACGCGGCAGCATCTGCTCATGGTCGCGCCGGCCGGCAA
TCCTTGCTGCCGGCATCGTTGCCGTTGCTGCCGCTGCTGCCTCTGCGGTG
GCGGTGGTGGCGGCGCTGCTGGTGCGATGGTCCTGCTGTCGTCGTCGGAC
CAGACTCTCGAGGTGCAGCCCCCTTCTCTCCTGCCGCCGGTTCTCGTCCT
CCCCGTCGTCGTCGCCGCACTCACCGTCGAAGGCTGGACCGCGTGGCCCG
GGCCACGGGACGCGCCTCTCAGCTTCTTCTGCAGACTCGAAGTTCTCTCC
CGAGTCGCCGACGATGCTCGTCACCGAAGCTGTGGTGTCTTCGTCCTCCT
GTCCTCGCCGACGGGACGAGGGGTTCCAGTGCCGCGTCACACTACGACGG
GGGACCGCCGTGTCCGCCCTCGTCGAGTCGTTTCGCCAGTGGCTGGGTTG
CCGTCCCCGTTCTTGGTGCCGTCGCCGTGGTCGCCTGGGTTGTTCGCCAC
CCCGCGTGTCCATTCCGTCGACCCCCTGCTTCTTGCCCTGATAGCTGGCG
GTACCGCTGCCGTCGCTTTCCCCGTCAGACTGCGTTAGCGAGTCAAACGA
CTGAGGGGAGGGCAGGGGATCTTGCTCGGAGGGCAGCGGGACAGCGGGTT
TGCTCCGTGCGCCGTGTCCGTTACCGTTTTTGCCGACACCACGGCTGCGG
AGGCCATTTACACTTTCGGTCACACGACCAGTGTCCTCACACAGACCTCG
GTCGCCTCTGTCGAAGTCGTCGATCCATGGATCCTCCTCCGCCCAGCCAC
CGGAGCGTGGGTCGTTCATCTCGATACGACCACCGTTGGCTGCCATCATC
CGCCGTTCCTTGTCCACGACGCTGCTCCCGCCGCTGCCTCTCCCGCCTCT
CCCAGCTCCGAATGCGAGCATCGTCGAACGCGGCAGCATCTGCTCATGGT
CGCGCCGGCCGGCAATCCTTGCTGCCGGCATCGTTGCCGTTGCTGCCGCT
GCTGCCTCTGCGGTGGCGGTGGTGGCGGCGCTGCTGGTGCGATGGTCCTG
CTGTCGTCGTCGGACCAGACTCTCGAGGTGCAGCCCCCTTCTCTCCTGCC
GCCGGTTCTCGTCCTCCCCGTCGTCGTCGCCGCACTCACCGTCGAAGGCT
GGACCGCGTGGCCCGGGCCACGGGACGCGCCTCTCAGCTTCTTCTGCAGA
CTCGAAGTTCTCTCCCGAGTCGCCGACGATGCTCGTCACCGAAGCTGTGG
TGTCTTCGTCCTCCTGTCCTCGCCGACGGGACGAGGGGTTCCAGTGCCGC
GTCACACTACGACGGGGGACCGCCGTGTCCGCCCTCGTCGAGTCGTTTCG
CCAGTGGCTGGGTTGCCGTCCCCGTTCTTGGTGCCGTCGCCGTGGTCGCC
TGGGTTGTTCGCCACCCCGCGTGTCCATTCCGTCGACCCCCTGCTTCTTG
CCCTGATAGCTGGCGGTACCGCTGCCGTCGCTTTCCCCGTCAGACTGCGT
TAGCGAGTCAAACGACTGAGGGGAGGGCAGGGGATCTTGCTCGGAGGGCA
GCGGGACAGCGGGTTTGCTCCGTGCGCCGT
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