mRNA_P-fluviatile_contig11.1257.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1257.1
Unique NamemRNA_P-fluviatile_contig11.1257.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1257.1 vs. uniprot
Match: A0A6H5KTI1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.210e-18
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:  475 QDGASLARIENLPSSNAISEEAASKSRNEELRKALVGFYSVHNPERIPNLDLILAQYEGKEEVLIERLERKYSADLSYARRA 720
            ++G +  R++  PS       A   S+ +ELRKALVGFYSVHNP RI NLD IL QY GKE +LIERLE KYSADLSYARRA
Sbjct:  146 EEGVAAVRVKEAPS-------AVPPSQTDELRKALVGFYSVHNPGRIANLDAILTQYAGKEGLLIERLEHKYSADLSYARRA 220
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BLAST of mRNA_P-fluviatile_contig11.1257.1 vs. uniprot
Match: D7FQN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN6_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 9.880e-13
Identity = 41/49 (83.67%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:  574 ALVGFYSVHNPERIPNLDLILAQYEGKEEVLIERLERKYSADLSYARRA 720
            ALVGFYSVHNP RI NLD IL QY GKE +LIERLE KYSADLSYARRA
Sbjct:   20 ALVGFYSVHNPGRIANLDAILTQYAGKEGLLIERLEHKYSADLSYARRA 68
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BLAST of mRNA_P-fluviatile_contig11.1257.1 vs. uniprot
Match: A0A2D4BIZ8_PYTIN (Dipeptidyl peptidase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIZ8_PYTIN)

HSP 1 Score: 59.7 bits (143), Expect = 6.680e-6
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:  562 ELRKALVGFYSVHNPERIPNLDLILAQYEGKEEVLIERLERKYSADLSYARRAATV 729
            + RK LV FYS HNPE++ ++D ILA+Y G EE+L  RL RKYS  LS+ R  A V
Sbjct:  320 QYRKKLVAFYSKHNPEKLQDVDRILAKYRGNEELLFTRLHRKYSV-LSHTRAEAAV 374
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BLAST of mRNA_P-fluviatile_contig11.1257.1 vs. uniprot
Match: A0A7S1Y338_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y338_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.180e-5
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  526 ISEEAASKSRNEE--------LRKALVGFYSVHNPERIPNLDLILAQYEGKEEVLIERLERKY 690
            + EE  SK+ NEE        LR  LV FY VH+P+R+ ++D  L +Y+G+E+V++E++ +KY
Sbjct:   36 LKEEDVSKTANEEGSSADNGGLRSRLVAFYEVHSPDRVGSVDQQLEKYKGREDVMLEKMRKKY 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KTI1_9PHAE4.210e-1862.20Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FQN6_ECTSI9.880e-1383.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4BIZ8_PYTIN6.680e-655.36Dipeptidyl peptidase, putative n=1 Tax=Pythium ins... [more]
A0A7S1Y338_9STRA7.180e-541.27Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:3016014..3018057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1179
Cds size870
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1257.1prot_P-fluviatile_contig11.1257.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 3016209..3017943 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815427.1381176-UTR-P-fluviatile_contig11:3016013..30162081622815427.1381176-UTR-P-fluviatile_contig11:3016013..3016208Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3016014..3016208 -
1693561809.564248-UTR-P-fluviatile_contig11:3016013..30162081693561809.564248-UTR-P-fluviatile_contig11:3016013..3016208Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3016014..3016208 -
1622815427.192215-UTR-P-fluviatile_contig11:3017943..30180571622815427.192215-UTR-P-fluviatile_contig11:3017943..3018057Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3017944..3018057 -
1693561809.6079621-UTR-P-fluviatile_contig11:3017943..30180571693561809.6079621-UTR-P-fluviatile_contig11:3017943..3018057Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 3017944..3018057 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815427.1506343-CDS-P-fluviatile_contig11:3016208..30163651622815427.1506343-CDS-P-fluviatile_contig11:3016208..3016365Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3016209..3016365 -
1693561809.573893-CDS-P-fluviatile_contig11:3016208..30163651693561809.573893-CDS-P-fluviatile_contig11:3016208..3016365Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3016209..3016365 -
1622815427.1636393-CDS-P-fluviatile_contig11:3016465..30167191622815427.1636393-CDS-P-fluviatile_contig11:3016465..3016719Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3016466..3016719 -
1693561809.5835962-CDS-P-fluviatile_contig11:3016465..30167191693561809.5835962-CDS-P-fluviatile_contig11:3016465..3016719Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3016466..3016719 -
1622815427.1792986-CDS-P-fluviatile_contig11:3017484..30179431622815427.1792986-CDS-P-fluviatile_contig11:3017484..3017943Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3017485..3017943 -
1693561809.598273-CDS-P-fluviatile_contig11:3017484..30179431693561809.598273-CDS-P-fluviatile_contig11:3017484..3017943Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 3017485..3017943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1257.1

>prot_P-fluviatile_contig11.1257.1 ID=prot_P-fluviatile_contig11.1257.1|Name=mRNA_P-fluviatile_contig11.1257.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=290bp
MEKEGENVVPNEVEERHAEAVKGLVQEIIIAVSNAGDESVCCSQPSPARM
RGLSSCLLPAEVEAPPTGTSEAEEQEKAMRAAREGKGQPMDPSTIAAVVA
AAESAASAVPATFPPAAEGRQDGASLARIENLPSSNAISEEAASKSRNEE
LRKALVGFYSVHNPERIPNLDLILAQYEGKEEVLIERLERKYSADLSYAR
RAATVGAGTAAAAVGKGEEALRVASGDQPPLLLRSSPHDNNNNNNNNNNN
NPRRPRGWRPRGRLDPALPSPATLGRFSPPRTATPQQAT*
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mRNA from alignment at P-fluviatile_contig11:3016014..3018057-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1257.1 ID=mRNA_P-fluviatile_contig11.1257.1|Name=mRNA_P-fluviatile_contig11.1257.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2044bp|location=Sequence derived from alignment at P-fluviatile_contig11:3016014..3018057- (Porterinema fluviatile SAG_2381)
TGATGGGGGTTTTATGCTTGCGGCTTTCATCACACGTCTCCCCGTGTTGA
TGTTGCCCGAGCTGGCGAGACGGCAAGCTGAACATGCTCAACAGCAGCAG
CGTTGTGCTGTGTCATGGAGAAGGAAGGAGAGAATGTTGTGCCTAATGAG
GTGGAGGAAAGACATGCCGAAGCAGTCAAAGGCCTTGTGCAGGAAATAAT
TATTGCAGTGAGCAATGCCGGAGATGAAAGTGTTTGTTGTTCGCAGCCGT
CGCCCGCCCGGATGCGCGGGCTCTCTTCTTGTCTGCTGCCCGCAGAAGTG
GAAGCCCCACCAACAGGGACTTCTGAAGCGGAAGAACAGGAAAAAGCAAT
GCGAGCAGCACGGGAAGGGAAAGGACAGCCGATGGATCCCAGCACGATAG
CAGCAGTAGTAGCAGCAGCAGAATCCGCCGCATCCGCTGTACCCGCGACC
TTCCCTCCCGCTGCAGAGGGGAGACAGGACGGGGCAAGCTTGGCTCGGAT
TGAAAACTTGCCATCATCGAATGCGATATCGGAGGAAGCGGCATCTAAGT
CCAGAAATGAAGAGCTTCGAAAGGTGGGGATATGCGATCAAACCCGCGAA
GTTATACACGGCCTATGACCGGCGGCAAGACTGCTGTGGCTCCCCCGCCG
ACAGCCCCCTCAATGTACCACACTTACAGCAGGCTTGCTTGTGAATCGCT
GCTTTATGCTGGCAGAGGGGCCGTCGGTTTCGATACTTGACAAAAAGCGG
CGGTGAGCTACCTTTCTTCTCAAGTCCTGCAGGGGTCGATTGACAAAACC
GATTATTCGAAGGCCGCGTGACGCGAACGGGTTTGCGCTTGTGGCCGAAC
GTTTGAGAGACGAAAGCTTCCGACGAAATTGTGTGATCATGTGGCACGCC
AGTCTTTACTCATACCCGGACATGCGATCCCTCCCCTCTTTCAGCTGTGC
GACCTGCTCCCGCTGGCTGTCGCCACACGCATCGACACGCATCATCCCAG
CACTGCGTGGTCGAATGCTGCGCTTTCGTTGTCCGCGGGAACGTTCCACC
CTGCCGCGTTAGAGCTGGCCAGCATGACCGGCTTTTAATGCCTAAAACAA
TATTATTGGAGCTGGCCGCTTGCCAAAACTCGGTTCGCGTTGTAGATCAT
CTACCCCCTATCCCCGCCTTCACCCGTCTAGCCTTGTATTACATGCATCC
GCTTTGCAAGAACCAGGCCCGCGTTCCATAGTTTGATGGCAACATCCTGC
GACGCTTCCACGGCGGGTTTTTTTCAATTCCTTGAACCCCTTCGCAAACG
CCTCTCCTGGTGGCGTCTTCCCTCTTGTACGACCGCAGGCACTGGTGGGG
TTCTACAGCGTCCACAACCCGGAGAGAATACCTAATCTCGACCTTATCCT
GGCACAGTACGAGGGCAAAGAAGAGGTGCTTATCGAGCGCCTCGAGCGCA
AGTACTCCGCCGACCTCTCGTACGCCAGACGAGCAGCTACAGTAGGAGCA
GGAACAGCAGCAGCAGCAGTAGGAAAGGGGGAAGAGGCATTGCGAGTCGC
CTCCGGTGACCAACCACCTCTCCTGCTGAGATCTTCGCCTCAGCAACATC
GACGACACCACTTGAAGCAGCAGCAACATCAGCAGCAGCAGCAACAACAG
CAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAACA
ACAACAACAACAACAACAACAACAACAACAACCCTCGACGGCCGCGGGGA
TGGCGACCGCGGGGCCGCCTCGATCCCGCCTTGCCCTCCCCCGCCACCCT
GGGTCGATTTTCTCCGCCGAGAACAGCCACGCCTCAACAAGCTACATAAG
CTACCTGGCAGATCAAATTAGATCAAACGTCGAAGGCTTCTTGCCGGCGT
CAAGTAACGACGGCGGCGGCGCCGCTTCCGTTGTCAGTCCCTGCATTGTG
CCGCCCGCAGCAGCAGCAGCGATGGCAGGCGCTGAGAAGCAGCGCCTGGC
TTCCCCCGGTCTCGGGGAAGCGATGGTGGTGGCAGGGGCAGGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:3016014..3018057-

>mRNA_P-fluviatile_contig11.1257.1 ID=mRNA_P-fluviatile_contig11.1257.1|Name=mRNA_P-fluviatile_contig11.1257.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1740bp|location=Sequence derived from alignment at P-fluviatile_contig11:3016014..3018057- (Porterinema fluviatile SAG_2381)
ATGGAGAAGGAAGGAGAGAATGTTGTGCCTAATGAGGTGGAGGAAAGACA
TGCCGAAGCAGTCAAAGGCCTTGTGCAGGAAATAATTATTGCAGTGAGCA
ATGCCGGAGATGAAAGTGTTTGTTGTTCGCAGCCGTCGCCCGCCCGGATG
CGCGGGCTCTCTTCTTGTCTGCTGCCCGCAGAAGTGGAAGCCCCACCAAC
AGGGACTTCTGAAGCGGAAGAACAGGAAAAAGCAATGCGAGCAGCACGGG
AAGGGAAAGGACAGCCGATGGATCCCAGCACGATAGCAGCAGTAGTAGCA
GCAGCAGAATCCGCCGCATCCGCTGTACCCGCGACCTTCCCTCCCGCTGC
AGAGGGGAGACAGGACGGGGCAAGCTTGGCTCGGATTGAAAACTTGCCAT
CATCGAATGCGATATCGGAGGAAGCGGCATCTAAGTCCAGAAATGAAGAG
CTTCGAAAGATGGAGAAGGAAGGAGAGAATGTTGTGCCTAATGAGGTGGA
GGAAAGACATGCCGAAGCAGTCAAAGGCCTTGTGCAGGAAATAATTATTG
CAGTGAGCAATGCCGGAGATGAAAGTGTTTGTTGTTCGCAGCCGTCGCCC
GCCCGGATGCGCGGGCTCTCTTCTTGTCTGCTGCCCGCAGAAGTGGAAGC
CCCACCAACAGGGACTTCTGAAGCGGAAGAACAGGAAAAAGCAATGCGAG
CAGCACGGGAAGGGAAAGGACAGCCGATGGATCCCAGCACGATAGCAGCA
GTAGTAGCAGCAGCAGAATCCGCCGCATCCGCTGTACCCGCGACCTTCCC
TCCCGCTGCAGAGGGGAGACAGGACGGGGCAAGCTTGGCTCGGATTGAAA
ACTTGCCATCATCGAATGCGATATCGGAGGAAGCGGCATCTAAGTCCAGA
AATGAAGAGCTTCGAAAGGCACTGGTGGGGTTCTACAGCGTCCACAACCC
GGAGAGAATACCTAATCTCGACCTTATCCTGGCACAGTACGAGGGCAAAG
AAGAGGTGCTTATCGAGCGCCTCGAGCGCAAGTACTCCGCCGACCTCTCG
TACGCCAGACGAGCAGCTACAGTAGGAGCAGGAACAGCAGCAGCAGCAGT
AGGAAAGGGGGAAGAGGCATTGCGAGTCGCCTCCGGTGACCAACCACCTC
TCCTGCTGAGATCTTCGCCTCAGCACTGGTGGGGTTCTACAGCGTCCACA
ACCCGGAGAGAATACCTAATCTCGACCTTATCCTGGCACAGTACGAGGGC
AAAGAAGAGGTGCTTATCGAGCGCCTCGAGCGCAAGTACTCCGCCGACCT
CTCGTACGCCAGACGAGCAGCTACAGTAGGAGCAGGAACAGCAGCAGCAG
CAGTAGGAAAGGGGGAAGAGGCATTGCGAGTCGCCTCCGGTGACCAACCA
CCTCTCCTGCTGAGATCTTCGCCTCACGACAACAACAACAACAACAACAA
CAACAACAACAACAACCCTCGACGGCCGCGGGGATGGCGACCGCGGGGCC
GCCTCGATCCCGCCTTGCCCTCCCCCGCCACCCTGGGTCGATTTTCTCCG
CCGAGAACAGCCACGCCTCAACAAGCTACATAACGACAACAACAACAACA
ACAACAACAACAACAACAACAACCCTCGACGGCCGCGGGGATGGCGACCG
CGGGGCCGCCTCGATCCCGCCTTGCCCTCCCCCGCCACCCTGGGTCGATT
TTCTCCGCCGAGAACAGCCACGCCTCAACAAGCTACATAA
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