mRNA_P-fluviatile_contig11.1084.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1084.1
Unique NamemRNA_P-fluviatile_contig11.1084.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:1166912..1167466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815425.5255797-CDS-P-fluviatile_contig11:1166913..11671101622815425.5255797-CDS-P-fluviatile_contig11:1166913..1167110Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1166914..1167110 -
1693561808.3837621-CDS-P-fluviatile_contig11:1166913..11671101693561808.3837621-CDS-P-fluviatile_contig11:1166913..1167110Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1166914..1167110 -
1622815425.5380144-CDS-P-fluviatile_contig11:1167384..11674661622815425.5380144-CDS-P-fluviatile_contig11:1167384..1167466Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1167385..1167466 -
1693561808.3950996-CDS-P-fluviatile_contig11:1167384..11674661693561808.3950996-CDS-P-fluviatile_contig11:1167384..1167466Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1167385..1167466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1084.1prot_P-fluviatile_contig11.1084.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 1166914..1167466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1084.1

>prot_P-fluviatile_contig11.1084.1 ID=prot_P-fluviatile_contig11.1084.1|Name=mRNA_P-fluviatile_contig11.1084.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=93bp
AGRDSPGGSSTSGQFINDSQDFSPLSTEDALQGNGGLCVCEKQPRILESS
AEGYPRRAAPDTEFACEWVECAGVPRYEGVCNDCLSGVADLIS
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mRNA from alignment at P-fluviatile_contig11:1166912..1167466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1084.1 ID=mRNA_P-fluviatile_contig11.1084.1|Name=mRNA_P-fluviatile_contig11.1084.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=555bp|location=Sequence derived from alignment at P-fluviatile_contig11:1166912..1167466- (Porterinema fluviatile SAG_2381)
GCAGGTCGAGATTCTCCTGGGGGATCTTCCACTTCTGGTCAGTTCATCAA
CGACAGTCAAGATTTTTCTCCGCTATCGACAGGTGTGGGGTACGGAGTTG
TGCGGGTGTGTTGTACCTCGTCCGAGAGTCATGCGTTTTTTTGTGCGGCG
AGAGAGTGGAGAAAATAGAGCGAGCTTTGGCCACACGCCACATCCCTTTT
GGTTGCCCCAGGCCGATACATCACCACCAAACAGAGGCGCAAACCAGTGT
TCAATGTGCTGCAGTGGTTGGATTTGTGGTTTTGGGTGACTTGCCCTGCG
GGGCAGGTGTGATTCCATCGCGCGCTCTGTTTTGTGTGGATTTCCCAACC
GTGCAGAGGACGCTCTCCAAGGGAACGGAGGTCTATGTGTGTGCGAAAAG
CAACCAAGAATCTTGGAAAGTAGCGCCGAAGGTTACCCGCGCCGCGCCGC
TCCGGATACTGAATTCGCGTGTGAGTGGGTGGAGTGTGCTGGCGTCCCGA
GATACGAGGGCGTCTGCAATGACTGCCTGAGTGGGGTGGCAGATCTGATC
TCCAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:1166912..1167466-

>mRNA_P-fluviatile_contig11.1084.1 ID=mRNA_P-fluviatile_contig11.1084.1|Name=mRNA_P-fluviatile_contig11.1084.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=558bp|location=Sequence derived from alignment at P-fluviatile_contig11:1166912..1167466- (Porterinema fluviatile SAG_2381)
GCAGGTCGAGATTCTCCTGGGGGATCTTCCACTTCTGGTCAGTTCATCAA
CGACAGTCAAGATTTTTCTCCGCTATCGACAGGCAGGTCGAGATTCTCCT
GGGGGATCTTCCACTTCTGGTCAGTTCATCAACGACAGTCAAGATTTTTC
TCCGCTATCGACAGAGGACGCTCTCCAAGGGAACGGAGGTCTATGTGTGT
GCGAAAAGCAACCAAGAATCTTGGAAAGTAGCGCCGAAGGTTACCCGCGC
CGCGCCGCTCCGGATACTGAATTCGCGTGTGAGTGGGTGGAGTGTGCTGG
CGTCCCGAGATACGAGGGCGTCTGCAATGACTGCCTGAGTGGGGTGGCAG
ATCTGATCTCCAGGACGCTCTCCAAGGGAACGGAGGTCTATGTGTGTGCG
AAAAGCAACCAAGAATCTTGGAAAGTAGCGCCGAAGGTTACCCGCGCCGC
GCCGCTCCGGATACTGAATTCGCGTGTGAGTGGGTGGAGTGTGCTGGCGT
CCCGAGATACGAGGGCGTCTGCAATGACTGCCTGAGTGGGGTGGCAGATC
TGATCTCC
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