mRNA_P-fluviatile_contig1.490.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.490.1
Unique NamemRNA_P-fluviatile_contig1.490.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5447111..5447468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size359
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.5940552-UTR-P-fluviatile_contig1:5447110..54471171622815270.5940552-UTR-P-fluviatile_contig1:5447110..5447117Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5447111..5447117 +
1693561322.909088-UTR-P-fluviatile_contig1:5447110..54471171693561322.909088-UTR-P-fluviatile_contig1:5447110..5447117Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5447111..5447117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.6054113-CDS-P-fluviatile_contig1:5447117..54474681622815270.6054113-CDS-P-fluviatile_contig1:5447117..5447468Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5447118..5447468 +
1693561322.98306-CDS-P-fluviatile_contig1:5447117..54474681693561322.98306-CDS-P-fluviatile_contig1:5447117..5447468Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5447118..5447468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.490.1prot_P-fluviatile_contig1.490.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5447118..5447468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.490.1

>prot_P-fluviatile_contig1.490.1 ID=prot_P-fluviatile_contig1.490.1|Name=mRNA_P-fluviatile_contig1.490.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=117bp
MQQPAMASVGIAQSPTAAERISPSPLSIPSNAAVEAAWTSLISLVDGFPS
SLGPLEQQQELVGAPDSGRRAQIAGNISILRAGGLLEVLRAYVLSVLDRI
VRDDVTPRFWALLDDNN
back to top

mRNA from alignment at P-fluviatile_contig1:5447111..5447468+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.490.1 ID=mRNA_P-fluviatile_contig1.490.1|Name=mRNA_P-fluviatile_contig1.490.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=358bp|location=Sequence derived from alignment at P-fluviatile_contig1:5447111..5447468+ (Porterinema fluviatile SAG_2381)
CCTGCTGATGCAACAGCCAGCAATGGCTTCCGTAGGCATCGCGCAGTCGC
CAACAGCAGCAGAGAGAATTTCGCCATCACCTCTTTCCATCCCTTCCAAC
GCTGCAGTAGAAGCGGCGTGGACTTCCTTAATTTCGTTAGTCGACGGCTT
CCCTTCTTCCTTGGGACCTCTGGAGCAGCAACAGGAGCTCGTTGGTGCTC
CCGATTCCGGTAGAAGAGCCCAGATAGCTGGAAACATATCTATCCTACGA
GCAGGCGGGCTGCTGGAGGTTTTACGCGCCTACGTGCTGAGCGTGCTGGA
CAGGATCGTCCGGGATGATGTTACTCCGCGTTTTTGGGCGCTGCTCGACG
ACAACAAC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:5447111..5447468+

>mRNA_P-fluviatile_contig1.490.1 ID=mRNA_P-fluviatile_contig1.490.1|Name=mRNA_P-fluviatile_contig1.490.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=702bp|location=Sequence derived from alignment at P-fluviatile_contig1:5447111..5447468+ (Porterinema fluviatile SAG_2381)
ATGCAACAGCCAGCAATGGCTTCCGTAGGCATCGCGCAGTCGCCAACAGC
AGCAGAGAGAATTTCGCCATCACCTCTTTCCATCCCTTCCAACGCTGCAG
TAGAAGCGGCGTGGACTTCCTTAATTTCGTTAGTCGACGGCTTCCCTTCT
TCCTTGGGACCTCTGGAGCAGCAACAGGAGCTCGTTGGTGCTCCCGATTC
CGGTAGAAGAGCCCAGATAGCTGGAAACATATCTATCCTACGAGCAGGCG
GGCTGCTGGAGGTTTTACGCGCCTACGTGCTGAGCGTGCTGGACAGGATC
GTCCGGGATGATGTTACTCCGCGTTTTTGGGCGCTGCTCGACGACAACAA
CATGCAACAGCCAGCAATGGCTTCCGTAGGCATCGCGCAGTCGCCAACAG
CAGCAGAGAGAATTTCGCCATCACCTCTTTCCATCCCTTCCAACGCTGCA
GTAGAAGCGGCGTGGACTTCCTTAATTTCGTTAGTCGACGGCTTCCCTTC
TTCCTTGGGACCTCTGGAGCAGCAACAGGAGCTCGTTGGTGCTCCCGATT
CCGGTAGAAGAGCCCAGATAGCTGGAAACATATCTATCCTACGAGCAGGC
GGGCTGCTGGAGGTTTTACGCGCCTACGTGCTGAGCGTGCTGGACAGGAT
CGTCCGGGATGATGTTACTCCGCGTTTTTGGGCGCTGCTCGACGACAACA
AC
back to top