mRNA_P-fluviatile_contig106.960.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig106.960.1
Unique NamemRNA_P-fluviatile_contig106.960.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig106.960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig106contigP-fluviatile_contig106:14753..16366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig106.960.1prot_P-fluviatile_contig106.960.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig106 14753..16344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815423.2505708-CDS-P-fluviatile_contig106:14752..148321622815423.2505708-CDS-P-fluviatile_contig106:14752..14832Porterinema fluviatile SAG_2381CDSP-fluviatile_contig106 14753..14832 -
1693561799.3013303-CDS-P-fluviatile_contig106:14752..148321693561799.3013303-CDS-P-fluviatile_contig106:14752..14832Porterinema fluviatile SAG_2381CDSP-fluviatile_contig106 14753..14832 -
1622815423.332228-CDS-P-fluviatile_contig106:16190..163441622815423.332228-CDS-P-fluviatile_contig106:16190..16344Porterinema fluviatile SAG_2381CDSP-fluviatile_contig106 16191..16344 -
1693561799.308727-CDS-P-fluviatile_contig106:16190..163441693561799.308727-CDS-P-fluviatile_contig106:16190..16344Porterinema fluviatile SAG_2381CDSP-fluviatile_contig106 16191..16344 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815423.346575-UTR-P-fluviatile_contig106:16344..163661622815423.346575-UTR-P-fluviatile_contig106:16344..16366Porterinema fluviatile SAG_2381UTRP-fluviatile_contig106 16345..16366 -
1693561799.3217118-UTR-P-fluviatile_contig106:16344..163661693561799.3217118-UTR-P-fluviatile_contig106:16344..16366Porterinema fluviatile SAG_2381UTRP-fluviatile_contig106 16345..16366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig106.960.1

>prot_P-fluviatile_contig106.960.1 ID=prot_P-fluviatile_contig106.960.1|Name=mRNA_P-fluviatile_contig106.960.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=78bp
MMPRSSHRLPDDPASREKLQSPHGRDVVSRKMRWRAGSSSRHTDVTWSRG
RYVPVVSPMMPRSSHRLPDDPASREKLQ
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mRNA from alignment at P-fluviatile_contig106:14753..16366-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig106.960.1 ID=mRNA_P-fluviatile_contig106.960.1|Name=mRNA_P-fluviatile_contig106.960.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1614bp|location=Sequence derived from alignment at P-fluviatile_contig106:14753..16366- (Porterinema fluviatile SAG_2381)
AGACGTGCCTGTCGTCTCCCCGATGATGCCGCGGAGCTCCCATCGTCTCC
CCGATGATCCCGCTTCGCGCGAGAAGCTCCAGTCGCCACACGGACGTGAC
GTGGTCTCGCGGAAGATGCGGTGGCGCGCGGGGAGCTCCAGTCGCCACAC
GGACGTGACGTGGTCTCGCGGAAGATGCGGTGGCGCGCGGGGAGCTCCAG
CGGCGGTAGGAGCACCGCCAGATATTTGTTTCTGCAACAACAAATTCAAA
AAAAAAATCAAAAACAAAAAAATGAAATGGCGTTTTAACTCCGCCCGCCG
ATTTTGTCACATCGATTGGTACATGGTCATCATATTACCCTCCTACAATT
ATGACCATCACAATGGTCTCGAATGTCGATCACACCTGATTGCCGAAAAC
AACGAGTGTTTGTATGGTTAGTGTGAATGCATTAGACCACTCATCCACGA
GGCATAAGCCTAACGATATGCACAGATTCCCCTAGATACGTAACCTTCCC
GATCACACTTGAATCGCTGAGATGTGTTTAATGCTACGTGCCCTACCACA
ACGTATGACCATCACCATGGTCTCGAATCTCGATCACACATGATTGTTGT
GACCAAATGATTAAGCAAGCTTTTTGTCAAGGAGTTTGACCTTTCATTCA
CGAGGCAAAAGCTTCACCGTATAGGCAGATTTTCCTACTTACTTCACATT
CTTTTCATACTTGAAACGCTGAGATGACGTCTGTTACTACGTAGTCATCG
CATTGCCCTCCTGTAACGATGAAGTCATATATGCACCCGCTCCACAGACG
TGCCTGTCGTCTCCCCGATGATGCCGCGGAGCTCCCATCGTCTCCCCGAT
GATCCCGCTTCGCGCGAGAAGCTCCAGTCGCCACACGGACGTGACGTGGT
CTCGCGGAAGATGCGGTGGTGCGCGGGGAGCTCCAGCGGCGGTAGGAGCA
CCGCCAGATATTTGTTTCTGCAACAACAAATTCAAAAAAAAAAAAAAAAA
AAAAAAAAATGAAATGGCGTTTTAACTCCGCCCGCCGATTTTGTCACATC
GATTGGTACATGGTCATCATATTACCCTCCTACAATTATGACCATCACAA
TGGTCTCGAATGTCGATCACACTTGATTGCCGAAAACAACGAGTGTTTGT
ATGGTTAGTGTGAATGCATTAGACCACTCATCCACGAGGCATAAGCCTAA
CGATATGCACAGATTCCCCTAGATACGTAACCTTCCCGATCACACTTGAA
TCGCTGAGATGTGTTTAATGCTACGTGCCCTACCACAACGTATGACCATC
ACCATGGTCTCGAATCTCGATCACACATGATTGTTGTGACCAAATGATTA
AGCAAGCTTTTTGTCAAGGAGTTTGACCTTTCATTCACGAGGCAAAAGCT
TCACCGTATAGGCAGATTTTCCTACTTACTTCACATTGTTTTCATACTTG
AAACGCTGAGATGACGTCTGTTACTACGTAGTCATCGCATTGCCCTCCTG
TAACGATGAAGTCATATATGCACCCGCTCCACAGACGTGCCTGTCGTCTC
CCCGATGATGCCGCGGAGCTCCCATCGTCTCCCCGATGATCCCGCTTCGC
GCGAGAAGCTCCAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig106:14753..16366-

>mRNA_P-fluviatile_contig106.960.1 ID=mRNA_P-fluviatile_contig106.960.1|Name=mRNA_P-fluviatile_contig106.960.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=468bp|location=Sequence derived from alignment at P-fluviatile_contig106:14753..16366- (Porterinema fluviatile SAG_2381)
ATGATGCCGCGGAGCTCCCATCGTCTCCCCGATGATCCCGCTTCGCGCGA
GAAGCTCCAGTCGCCACACGGACGTGACGTGGTCTCGCGGAAGATGCGGT
GGCGCGCGGGGAGCTCCAGTCGCCACACGGACGTGACGTGGTCTCGCGGA
AGATATGATGCCGCGGAGCTCCCATCGTCTCCCCGATGATCCCGCTTCGC
GCGAGAAGCTCCAGTCGCCACACGGACGTGACGTGGTCTCGCGGAAGATG
CGGTGGCGCGCGGGGAGCTCCAGTCGCCACACGGACGTGACGTGGTCTCG
CGGAAGATACGTGCCTGTCGTCTCCCCGATGATGCCGCGGAGCTCCCATC
GTCTCCCCGATGATCCCGCTTCGCGCGAGAAGCTCCAGACGTGCCTGTCG
TCTCCCCGATGATGCCGCGGAGCTCCCATCGTCTCCCCGATGATCCCGCT
TCGCGCGAGAAGCTCCAG
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