mRNA_P-fluviatile_contig105.954.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig105.954.1
Unique NamemRNA_P-fluviatile_contig105.954.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig105.954.1 vs. uniprot
Match: D8LP55_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP55_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 4.770e-26
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:    1 LRPAVRKHLTPTEKQHILMRQGSRCNNCGDRIRLHPYANCDADHIVGVGRGGRTTLENMKLLCVQDHRAKSVRE 222
            LRP  RKHLT  +K  IL RQ SRCN+CGDRIR++PYA+CDADHI+GV RGG+T  ENM LLC+  HR K+  E
Sbjct:   26 LRPVARKHLTRPQKWAILERQRSRCNSCGDRIRIYPYADCDADHIIGVCRGGKTVPENMNLLCLPCHRRKTCLE 99
[Close]
BLAST of mRNA_P-fluviatile_contig105.954.1 vs. uniprot
Match: D7G322_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G322_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 9.110e-25
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:    1 LRPAVRKHLTPTEKQHILMRQGSRCNNCGDRIRLHPYANCDADHIVGVGRGGRTTLENMKLLCVQDHRAKSVRE 222
            LRP  RKHLT ++KQ +L  Q SRCN+CGD I L PYANCDADH++GV RGG T  EN ++LCV+ HR K+  E
Sbjct:   26 LRPRARKHLTRSQKQAVLQTQRSRCNSCGDLIHLQPYANCDADHVIGVCRGGETVEENTQMLCVRCHRQKTCLE 99
[Close]
BLAST of mRNA_P-fluviatile_contig105.954.1 vs. uniprot
Match: Q8QNP5_ESV1K (EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP5_ESV1K)

HSP 1 Score: 96.3 bits (238), Expect = 2.450e-23
Identity = 46/74 (62.16%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    1 LRPAVRKHLTPTEKQHILMRQGSRCNNCGDRIRLHPYANCDADHIVGVGRGGRTTLENMKLLCVQDHRAKSVRE 222
            LRP  RKHLT  +K  IL RQ SRCN+ GDRI ++PYANCDADHI+ V RGG+T  ENM LLC+  HR K+  E
Sbjct:   26 LRPVARKHLTRPQKWAILERQRSRCNSYGDRIHIYPYANCDADHIISVCRGGKTLPENMNLLCLPCHRRKTCLE 99
[Close]
BLAST of mRNA_P-fluviatile_contig105.954.1 vs. uniprot
Match: A0A534LZK0_9EURY (DUF262 domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A534LZK0_9EURY)

HSP 1 Score: 48.9 bits (115), Expect = 7.000e-5
Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:   40 KQHILMRQGSRCNNCGDRIRLHPYANCDADHIVGVGRGGRTTLENMKLLCVQDHRAK 210
            K  +  R   +C  CG +IR+      +ADH+    RGG TTLEN KLLCV  +R+K
Sbjct:  374 KLALYRRANGKCEVCGTQIRVDQ---AEADHVFAWSRGGPTTLENAKLLCVSCNRSK 427
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig105.954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LP55_ECTSI4.770e-2664.86EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
D7G322_ECTSI9.110e-2560.81EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNP5_ESV1K2.450e-2362.16EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
A0A534LZK0_9EURY7.000e-543.86DUF262 domain-containing protein n=1 Tax=Euryarcha... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig105contigP-fluviatile_contig105:11748..11969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815422.7922096-CDS-P-fluviatile_contig105:11747..119691622815422.7922096-CDS-P-fluviatile_contig105:11747..11969Porterinema fluviatile SAG_2381CDSP-fluviatile_contig105 11748..11969 +
1693561798.8195567-CDS-P-fluviatile_contig105:11747..119691693561798.8195567-CDS-P-fluviatile_contig105:11747..11969Porterinema fluviatile SAG_2381CDSP-fluviatile_contig105 11748..11969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig105.954.1prot_P-fluviatile_contig105.954.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig105 11748..11969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig105.954.1

>prot_P-fluviatile_contig105.954.1 ID=prot_P-fluviatile_contig105.954.1|Name=mRNA_P-fluviatile_contig105.954.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=74bp
LRPAVRKHLTPTEKQHILMRQGSRCNNCGDRIRLHPYANCDADHIVGVGR
GGRTTLENMKLLCVQDHRAKSVRE
back to top

mRNA from alignment at P-fluviatile_contig105:11748..11969+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig105.954.1 ID=mRNA_P-fluviatile_contig105.954.1|Name=mRNA_P-fluviatile_contig105.954.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=222bp|location=Sequence derived from alignment at P-fluviatile_contig105:11748..11969+ (Porterinema fluviatile SAG_2381)
CTCAGGCCCGCCGTCCGAAAGCATCTGACGCCGACCGAAAAGCAACACAT
CCTGATGCGCCAAGGTTCGCGTTGCAACAACTGCGGAGATCGAATCCGCC
TTCACCCTTACGCCAACTGTGACGCAGACCACATAGTAGGGGTCGGCAGG
GGAGGCAGGACGACGCTCGAAAACATGAAGCTTCTCTGCGTACAAGACCA
CAGAGCGAAGTCTGTACGCGAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig105:11748..11969+

>mRNA_P-fluviatile_contig105.954.1 ID=mRNA_P-fluviatile_contig105.954.1|Name=mRNA_P-fluviatile_contig105.954.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=444bp|location=Sequence derived from alignment at P-fluviatile_contig105:11748..11969+ (Porterinema fluviatile SAG_2381)
CTCAGGCCCGCCGTCCGAAAGCATCTGACGCCGACCGAAAAGCAACACAT
CCTGATGCGCCAAGGTTCGCGTTGCAACAACTGCGGAGATCGAATCCGCC
TTCACCCTTACGCCAACTGTGACGCAGACCACATAGTAGGGGTCGGCAGG
GGAGGCAGGACGACGCTCGAAAACATGAAGCTTCTCTGCGTACAAGACCA
CAGAGCGAAGTCTGTACGCGAGCTCAGGCCCGCCGTCCGAAAGCATCTGA
CGCCGACCGAAAAGCAACACATCCTGATGCGCCAAGGTTCGCGTTGCAAC
AACTGCGGAGATCGAATCCGCCTTCACCCTTACGCCAACTGTGACGCAGA
CCACATAGTAGGGGTCGGCAGGGGAGGCAGGACGACGCTCGAAAACATGA
AGCTTCTCTGCGTACAAGACCACAGAGCGAAGTCTGTACGCGAG
back to top