mRNA_P-fluviatile_contig1.435.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.435.1
Unique NamemRNA_P-fluviatile_contig1.435.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4897469..4897927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.435.1prot_P-fluviatile_contig1.435.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4897563..4897913 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.3900983-UTR-P-fluviatile_contig1:4897468..48975621622815270.3900983-UTR-P-fluviatile_contig1:4897468..4897562Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4897469..4897562 +
1693561322.7170937-UTR-P-fluviatile_contig1:4897468..48975621693561322.7170937-UTR-P-fluviatile_contig1:4897468..4897562Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4897469..4897562 +
1622815270.414819-UTR-P-fluviatile_contig1:4897913..48979271622815270.414819-UTR-P-fluviatile_contig1:4897913..4897927Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4897914..4897927 +
1693561322.7365687-UTR-P-fluviatile_contig1:4897913..48979271693561322.7365687-UTR-P-fluviatile_contig1:4897913..4897927Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4897914..4897927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.4020412-CDS-P-fluviatile_contig1:4897562..48979131622815270.4020412-CDS-P-fluviatile_contig1:4897562..4897913Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4897563..4897913 +
1693561322.7272189-CDS-P-fluviatile_contig1:4897562..48979131693561322.7272189-CDS-P-fluviatile_contig1:4897562..4897913Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4897563..4897913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.435.1

>prot_P-fluviatile_contig1.435.1 ID=prot_P-fluviatile_contig1.435.1|Name=mRNA_P-fluviatile_contig1.435.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=117bp
MVWGLGKTTTPCSESNREQRREYDEQGPPACGACYPWMGALPRVTHPFSA
LKWMQMHMAPQIVPLDLLVPTQSTPGAPPADEIPCLTCLSPSSKRRRGCT
GRLGGCGGGNATSEFV*
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mRNA from alignment at P-fluviatile_contig1:4897469..4897927+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.435.1 ID=mRNA_P-fluviatile_contig1.435.1|Name=mRNA_P-fluviatile_contig1.435.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=459bp|location=Sequence derived from alignment at P-fluviatile_contig1:4897469..4897927+ (Porterinema fluviatile SAG_2381)
CCCTTTTCTACACGGGACCCCTTGGTGTTTGGACGGTGGTTTTCTTGCTG
ACGCACGTGTCGTGCAGCGTCGTGTTCGCGCGGGTGTAGTTCGTATGGTT
TGGGGGTTGGGAAAGACGACAACACCGTGCAGTGAATCAAATCGTGAACA
GCGCAGGGAATATGATGAGCAGGGTCCCCCTGCATGTGGTGCTTGTTACC
CTTGGATGGGTGCGCTTCCGAGGGTAACACATCCTTTTTCAGCCCTCAAG
TGGATGCAGATGCATATGGCCCCGCAAATTGTACCTCTTGACCTGCTGGT
ACCCACCCAGTCAACCCCCGGGGCCCCGCCGGCCGATGAAATCCCATGCC
TGACATGTCTGTCTCCTTCTAGCAAGCGAAGACGTGGGTGTACCGGGCGT
TTGGGAGGGTGCGGTGGCGGGAACGCAACGTCTGAATTCGTGTAGGAGAA
AGGTCGCAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4897469..4897927+

>mRNA_P-fluviatile_contig1.435.1 ID=mRNA_P-fluviatile_contig1.435.1|Name=mRNA_P-fluviatile_contig1.435.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=702bp|location=Sequence derived from alignment at P-fluviatile_contig1:4897469..4897927+ (Porterinema fluviatile SAG_2381)
ATGGTTTGGGGGTTGGGAAAGACGACAACACCGTGCAGTGAATCAAATCG
TGAACAGCGCAGGGAATATGATGAGCAGGGTCCCCCTGCATGTGGTGCTT
GTTACCCTTGGATGGGTGCGCTTCCGAGGGTAACACATCCTTTTTCAGCC
CTCAAGTGGATGCAGATGCATATGGCCCCGCAAATTGTACCTCTTGACCT
GCTGGTACCCACCCAGTCAACCCCCGGGGCCCCGCCGGCCGATGAAATCC
CATGCCTGACATGTCTGTCTCCTTCTAGCAAGCGAAGACGTGGGTGTACC
GGGCGTTTGGGAGGGTGCGGTGGCGGGAACGCAACGTCTGAATTCGTGTA
GATGGTTTGGGGGTTGGGAAAGACGACAACACCGTGCAGTGAATCAAATC
GTGAACAGCGCAGGGAATATGATGAGCAGGGTCCCCCTGCATGTGGTGCT
TGTTACCCTTGGATGGGTGCGCTTCCGAGGGTAACACATCCTTTTTCAGC
CCTCAAGTGGATGCAGATGCATATGGCCCCGCAAATTGTACCTCTTGACC
TGCTGGTACCCACCCAGTCAACCCCCGGGGCCCCGCCGGCCGATGAAATC
CCATGCCTGACATGTCTGTCTCCTTCTAGCAAGCGAAGACGTGGGTGTAC
CGGGCGTTTGGGAGGGTGCGGTGGCGGGAACGCAACGTCTGAATTCGTGT
AG
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