mRNA_P-fluviatile_contig1.367.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.367.1
Unique NamemRNA_P-fluviatile_contig1.367.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig1.367.1 vs. uniprot
Match: A0A6H5JDC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC7_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 5.630e-87
Identity = 158/180 (87.78%), Postives = 161/180 (89.44%), Query Frame = 1 
Query:   49 MGNKNKRDKKADSNPQAGTDAGNGALKTPSHNPXXXXXXQSTQQPVKKPSTNGKQPQRLAIGDASPSSKDYADAARNGTGKGGSSSNXXXXXXXXXXDPSNRFAALGEDNSPSKAADGGREEGEIPPDDPTRALATDFLANLQQAATTAAPSVPAPAGNFLAPFIISSLEQARDNKEEPE 588
            MGNKNKRD KA SN QAGTDAGNGALKTPSHNP      QSTQQ VKKPSTNGKQPQRLA GDASPSSKDYA AARNGTGKGGS   XXXXXXXXXXDPSNRFAALGE+NSPSKA  GGREEGEIPPDDPTRALA D LANLQQAATTAAPS+PAPAGNFLAPFIISSL+QARDNKEEPE
Sbjct:    1 MGNKNKRDNKAGSNSQAGTDAGNGALKTPSHNPKPSPPLQSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGSXXXXXXXXXXXXXDPSNRFAALGEENSPSKA--GGREEGEIPPDDPTRALAADVLANLQQAATTAAPSIPAPAGNFLAPFIISSLKQARDNKEEPE 178
[Close]
BLAST of mRNA_P-fluviatile_contig1.367.1 vs. uniprot
Match: A0A6H5KID2_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KID2_9PHAE)

HSP 1 Score: 272 bits (695), Expect = 6.600e-87
Identity = 160/180 (88.89%), Postives = 162/180 (90.00%), Query Frame = 1 
Query:   49 MGNKNKRDKKADSNPQAGTDAGNGALKTPSHNPXXXXXXQSTQQPVKKPSTNGKQPQRLAIGDASPSSKDYADAARNGTGKGGSSSNXXXXXXXXXXDPSNRFAALGEDNSPSKAADGGREEGEIPPDDPTRALATDFLANLQQAATTAAPSVPAPAGNFLAPFIISSLEQARDNKEEPE 588
            MGNKNKRD KA SN QAGTDAGNGALKTPSHNP      QSTQQ VKKPSTNGKQPQRLA GDASPSSKDYA AARNGTGKGGS   XXXXXXXXXXDPSNRFAALGE+NSPSKA DGGREEGEIPPDDPTRALA D LANLQQAATTAAPS+PAPAGNFLAPFIISSLEQARDNKEEPE
Sbjct:    1 MGNKNKRDNKAGSNSQAGTDAGNGALKTPSHNPKPSPPLQSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGSXXXXXXXXXXXXXDPSNRFAALGEENSPSKATDGGREEGEIPPDDPTRALAADVLANLQQAATTAAPSIPAPAGNFLAPFIISSLEQARDNKEEPE 180
[Close]
BLAST of mRNA_P-fluviatile_contig1.367.1 vs. uniprot
Match: A0A6H5KD06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD06_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 1.100e-70
Identity = 134/151 (88.74%), Postives = 136/151 (90.07%), Query Frame = 1 
Query:  133 PSHNPXXXXXXQSTQQPVKKPSTNGKQPQRLAIGDASPSSKDYADAARNGTGKGGSSSNXXXXXXXXXXDPSNRFAALGEDNSPSKAADGGREEGEIPPDDPTRALATDFLANLQQAATTAAPSVPAPAGNFLAPFIISSLEQARDNKEEP 585
            PSHNP      QSTQQ VKKPSTNGKQPQRLA GDASPSSKDYA AARNGTGKGGS   XXXXXXXXXXDPSNRFAALGE+NSPSKA DGGREEGEIPPDDPTRALA D LANLQQAATTAAPS+PAPAGNFLAPFIISSLEQARDNKEEP
Sbjct:  129 PSHNPKPSPPPQSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGSXXXXXXXXXXXXXDPSNRFAALGEENSPSKATDGGREEGEIPPDDPTRALAADVLANLQQAATTAAPSIPAPAGNFLAPFIISSLEQARDNKEEP 279
[Close]
BLAST of mRNA_P-fluviatile_contig1.367.1 vs. uniprot
Match: A0A6H5JT66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT66_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 2.100e-70
Identity = 133/153 (86.93%), Postives = 135/153 (88.24%), Query Frame = 1 
Query:   49 MGNKNKRDKKADSNPQAGTDAGNGALKTPSHNPXXXXXXQSTQQPVKKPSTNGKQPQRLAIGDASPSSKDYADAARNGTGKGGSSSNXXXXXXXXXXDPSNRFAALGEDNSPSKAADGGREEGEIPPDDPTRALATDFLANLQQAATTAAPSV 507
            MGNKNKRD KA SN QAGTDAGNGALKTPSHNP      QSTQQ VKKPSTNGKQPQRLA GDASPSSKDYA AARNGTGKGGS   XXXXXXXXXXDPSNRFAALGE+NSPSKA DGGREEGEIPPDDPTRALA D LANLQQAATTAAPS+
Sbjct:    1 MGNKNKRDNKAGSNSQAGTDAGNGALKTPSHNPKPSPPLQSTQQSVKKPSTNGKQPQRLATGDASPSSKDYAGAARNGTGKGGSXXXXXXXXXXXXXDPSNRFAALGEENSPSKATDGGREEGEIPPDDPTRALAADVLANLQQAATTAAPSI 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JDC7_9PHAE5.630e-8787.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KID2_9PHAE6.600e-8788.89Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD06_9PHAE1.100e-7088.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT66_9PHAE2.100e-7086.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4343488..4344076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size590
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.009488-CDS-P-fluviatile_contig1:4343487..43440751622815270.009488-CDS-P-fluviatile_contig1:4343487..4344075Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4343488..4344075 +
1693561321.835237-CDS-P-fluviatile_contig1:4343487..43440751693561321.835237-CDS-P-fluviatile_contig1:4343487..4344075Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4343488..4344075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.367.1prot_P-fluviatile_contig1.367.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4343488..4344075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.367.1

>prot_P-fluviatile_contig1.367.1 ID=prot_P-fluviatile_contig1.367.1|Name=mRNA_P-fluviatile_contig1.367.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=196bp
RAVSACLLLLFHPFFNMGNKNKRDKKADSNPQAGTDAGNGALKTPSHNPK
PSPPQQSTQQPVKKPSTNGKQPQRLAIGDASPSSKDYADAARNGTGKGGS
SSNGGDSSNSGGGDPSNRFAALGEDNSPSKAADGGREEGEIPPDDPTRAL
ATDFLANLQQAATTAAPSVPAPAGNFLAPFIISSLEQARDNKEEPE
back to top

mRNA from alignment at P-fluviatile_contig1:4343488..4344076+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.367.1 ID=mRNA_P-fluviatile_contig1.367.1|Name=mRNA_P-fluviatile_contig1.367.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=589bp|location=Sequence derived from alignment at P-fluviatile_contig1:4343488..4344076+ (Porterinema fluviatile SAG_2381)
AGAGCGGTTTCTGCGTGTCTGTTGCTGTTGTTTCACCCATTTTTCAACAT
GGGCAACAAGAACAAGAGAGACAAAAAAGCCGACTCGAACCCGCAGGCAG
GCACGGACGCCGGTAACGGCGCTCTTAAGACCCCCTCACACAACCCCAAA
CCCAGTCCTCCGCAGCAGTCTACACAGCAGCCTGTCAAGAAACCGTCTAC
CAACGGTAAACAGCCCCAGCGGCTTGCCATCGGTGACGCTTCTCCCAGCT
CTAAAGACTACGCTGACGCCGCCCGCAACGGAACTGGGAAGGGGGGCAGC
TCCAGCAATGGAGGTGACAGCTCCAACAGTGGTGGGGGTGACCCCAGCAA
CCGCTTCGCAGCACTGGGAGAAGACAACTCACCCAGCAAGGCCGCCGATG
GCGGTCGCGAGGAAGGAGAGATCCCTCCGGACGACCCCACACGCGCACTG
GCTACAGATTTCCTCGCGAATCTCCAACAAGCAGCCACCACTGCTGCTCC
CTCCGTTCCTGCCCCTGCTGGGAACTTCTTGGCGCCCTTCATCATCTCAA
GCTTGGAGCAGGCGCGTGACAACAAGGAGGAACCGGAAC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:4343488..4344076+

>mRNA_P-fluviatile_contig1.367.1 ID=mRNA_P-fluviatile_contig1.367.1|Name=mRNA_P-fluviatile_contig1.367.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1176bp|location=Sequence derived from alignment at P-fluviatile_contig1:4343488..4344076+ (Porterinema fluviatile SAG_2381)
AGAGCGGTTTCTGCGTGTCTGTTGCTGTTGTTTCACCCATTTTTCAACAT
GGGCAACAAGAACAAGAGAGACAAAAAAGCCGACTCGAACCCGCAGGCAG
GCACGGACGCCGGTAACGGCGCTCTTAAGACCCCCTCACACAACCCCAAA
CCCAGTCCTCCGCAGCAGTCTACACAGCAGCCTGTCAAGAAACCGTCTAC
CAACGGTAAACAGCCCCAGCGGCTTGCCATCGGTGACGCTTCTCCCAGCT
CTAAAGACTACGCTGACGCCGCCCGCAACGGAACTGGGAAGGGGGGCAGC
TCCAGCAATGGAGGTGACAGCTCCAACAGTGGTGGGGGTGACCCCAGCAA
CCGCTTCGCAGCACTGGGAGAAGACAACTCACCCAGCAAGGCCGCCGATG
GCGGTCGCGAGGAAGGAGAGATCCCTCCGGACGACCCCACACGCGCACTG
GCTACAGATTTCCTCGCGAATCTCCAACAAGCAGCCACCACTGCTGCTCC
CTCCGTTCCTGCCCCTGCTGGGAACTTCTTGGCGCCCTTCATCATCTCAA
GCTTGGAGCAGGCGCGTGACAACAAGGAGGAACCGGAAAGAGCGGTTTCT
GCGTGTCTGTTGCTGTTGTTTCACCCATTTTTCAACATGGGCAACAAGAA
CAAGAGAGACAAAAAAGCCGACTCGAACCCGCAGGCAGGCACGGACGCCG
GTAACGGCGCTCTTAAGACCCCCTCACACAACCCCAAACCCAGTCCTCCG
CAGCAGTCTACACAGCAGCCTGTCAAGAAACCGTCTACCAACGGTAAACA
GCCCCAGCGGCTTGCCATCGGTGACGCTTCTCCCAGCTCTAAAGACTACG
CTGACGCCGCCCGCAACGGAACTGGGAAGGGGGGCAGCTCCAGCAATGGA
GGTGACAGCTCCAACAGTGGTGGGGGTGACCCCAGCAACCGCTTCGCAGC
ACTGGGAGAAGACAACTCACCCAGCAAGGCCGCCGATGGCGGTCGCGAGG
AAGGAGAGATCCCTCCGGACGACCCCACACGCGCACTGGCTACAGATTTC
CTCGCGAATCTCCAACAAGCAGCCACCACTGCTGCTCCCTCCGTTCCTGC
CCCTGCTGGGAACTTCTTGGCGCCCTTCATCATCTCAAGCTTGGAGCAGG
CGCGTGACAACAAGGAGGAACCGGAA
back to top