mRNA_P-fluviatile_contig1.175.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.175.1
Unique NamemRNA_P-fluviatile_contig1.175.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2259532..2259858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size328
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.1400855-CDS-P-fluviatile_contig1:2259531..22598581622815269.1400855-CDS-P-fluviatile_contig1:2259531..2259858Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2259532..2259858 +
1693561319.5855672-CDS-P-fluviatile_contig1:2259531..22598581693561319.5855672-CDS-P-fluviatile_contig1:2259531..2259858Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2259532..2259858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.175.1prot_P-fluviatile_contig1.175.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2259532..2259858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.175.1

>prot_P-fluviatile_contig1.175.1 ID=prot_P-fluviatile_contig1.175.1|Name=mRNA_P-fluviatile_contig1.175.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=109bp
GEVLSAILGTRDTRSSEDKTFVEAIKELVRCVRRDNNKESEDQRQTSTGS
MSLSNVGSLTHQLWATGLMTKHGLAGDHFSHTGAGHRSNTVRHVRRAERA
EREGIRERG
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mRNA from alignment at P-fluviatile_contig1:2259532..2259858+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.175.1 ID=mRNA_P-fluviatile_contig1.175.1|Name=mRNA_P-fluviatile_contig1.175.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=327bp|location=Sequence derived from alignment at P-fluviatile_contig1:2259532..2259858+ (Porterinema fluviatile SAG_2381)
GGAGAAGTGCTGTCGGCAATCCTTGGAACAAGAGACACACGTAGTTCCGA
AGACAAGACTTTTGTTGAAGCTATCAAGGAGTTAGTGAGGTGTGTGAGGA
GAGATAATAACAAAGAGAGCGAGGATCAAAGGCAGACATCGACAGGGTCG
ATGAGTCTTTCGAACGTTGGTTCACTGACACATCAACTCTGGGCGACAGG
GTTGATGACGAAGCACGGACTGGCTGGAGATCACTTCAGTCACACTGGTG
CTGGTCATCGCTCTAATACTGTGCGCCACGTGAGACGGGCCGAGAGGGCC
GAGAGGGAGGGTATAAGAGAGAGGGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:2259532..2259858+

>mRNA_P-fluviatile_contig1.175.1 ID=mRNA_P-fluviatile_contig1.175.1|Name=mRNA_P-fluviatile_contig1.175.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=654bp|location=Sequence derived from alignment at P-fluviatile_contig1:2259532..2259858+ (Porterinema fluviatile SAG_2381)
GGAGAAGTGCTGTCGGCAATCCTTGGAACAAGAGACACACGTAGTTCCGA
AGACAAGACTTTTGTTGAAGCTATCAAGGAGTTAGTGAGGTGTGTGAGGA
GAGATAATAACAAAGAGAGCGAGGATCAAAGGCAGACATCGACAGGGTCG
ATGAGTCTTTCGAACGTTGGTTCACTGACACATCAACTCTGGGCGACAGG
GTTGATGACGAAGCACGGACTGGCTGGAGATCACTTCAGTCACACTGGTG
CTGGTCATCGCTCTAATACTGTGCGCCACGTGAGACGGGCCGAGAGGGCC
GAGAGGGAGGGTATAAGAGAGAGGGGCGGAGAAGTGCTGTCGGCAATCCT
TGGAACAAGAGACACACGTAGTTCCGAAGACAAGACTTTTGTTGAAGCTA
TCAAGGAGTTAGTGAGGTGTGTGAGGAGAGATAATAACAAAGAGAGCGAG
GATCAAAGGCAGACATCGACAGGGTCGATGAGTCTTTCGAACGTTGGTTC
ACTGACACATCAACTCTGGGCGACAGGGTTGATGACGAAGCACGGACTGG
CTGGAGATCACTTCAGTCACACTGGTGCTGGTCATCGCTCTAATACTGTG
CGCCACGTGAGACGGGCCGAGAGGGCCGAGAGGGAGGGTATAAGAGAGAG
GGGC
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