mRNA_P-fluviatile_contig1.37.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.37.1
Unique NamemRNA_P-fluviatile_contig1.37.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:664035..664510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size476
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.37.1prot_P-fluviatile_contig1.37.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 664063..664488 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.8635306-UTR-P-fluviatile_contig1:664034..6640621622815268.8635306-UTR-P-fluviatile_contig1:664034..664062Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 664035..664062 +
1693561318.1466744-UTR-P-fluviatile_contig1:664034..6640621693561318.1466744-UTR-P-fluviatile_contig1:664034..664062Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 664035..664062 +
1622815268.9090755-UTR-P-fluviatile_contig1:664488..6645101622815268.9090755-UTR-P-fluviatile_contig1:664488..664510Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 664489..664510 +
1693561318.3336055-UTR-P-fluviatile_contig1:664488..6645101693561318.3336055-UTR-P-fluviatile_contig1:664488..664510Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 664489..664510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.8998497-CDS-P-fluviatile_contig1:664062..6644881622815268.8998497-CDS-P-fluviatile_contig1:664062..664488Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 664063..664488 +
1693561318.219903-CDS-P-fluviatile_contig1:664062..6644881693561318.219903-CDS-P-fluviatile_contig1:664062..664488Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 664063..664488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.37.1

>prot_P-fluviatile_contig1.37.1 ID=prot_P-fluviatile_contig1.37.1|Name=mRNA_P-fluviatile_contig1.37.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=142bp
MRRWRSKQVQKPAHHILLALLLTLGGRFIPGGDGRGKRVGFEQGGKDRRS
LCLVPPRCIFRRLHSLSFSPSPLLLRSFIFFVSLLCLKLSLSFSISFSVS
HTLFVPLPLPPSPAGSHLGVCHRDWVFVAWQRRCKTSQFTP*
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mRNA from alignment at P-fluviatile_contig1:664035..664510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.37.1 ID=mRNA_P-fluviatile_contig1.37.1|Name=mRNA_P-fluviatile_contig1.37.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=476bp|location=Sequence derived from alignment at P-fluviatile_contig1:664035..664510+ (Porterinema fluviatile SAG_2381)
AATCTCCGCCTTGCCTCTGCTGCAGGTAATGCGACGCTGGAGATCGAAGC
AAGTCCAGAAACCGGCTCATCATATTCTTCTCGCTTTGTTGTTGACGTTG
GGGGGACGGTTCATACCAGGGGGGGACGGCCGGGGCAAAAGGGTAGGGTT
TGAACAAGGAGGGAAGGATCGTCGTTCCCTCTGCCTGGTTCCGCCTAGGT
GCATCTTCCGTCGCCTGCACTCTTTGTCTTTCTCCCCCTCTCCCCTTTTG
TTAAGATCGTTTATCTTTTTCGTCTCCCTTCTCTGTCTCAAGCTCTCTCT
GTCTTTCTCCATCTCCTTCTCCGTCTCTCATACCCTCTTTGTCCCTCTGC
CTCTTCCTCCCTCCCCCGCTGGCTCTCACCTCGGTGTTTGCCATCGGGAT
TGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCAATTCACTCC
GTGAACTCGGCAACCAGGTTACCGTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:664035..664510+

>mRNA_P-fluviatile_contig1.37.1 ID=mRNA_P-fluviatile_contig1.37.1|Name=mRNA_P-fluviatile_contig1.37.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=852bp|location=Sequence derived from alignment at P-fluviatile_contig1:664035..664510+ (Porterinema fluviatile SAG_2381)
ATGCGACGCTGGAGATCGAAGCAAGTCCAGAAACCGGCTCATCATATTCT
TCTCGCTTTGTTGTTGACGTTGGGGGGACGGTTCATACCAGGGGGGGACG
GCCGGGGCAAAAGGGTAGGGTTTGAACAAGGAGGGAAGGATCGTCGTTCC
CTCTGCCTGGTTCCGCCTAGGTGCATCTTCCGTCGCCTGCACTCTTTGTC
TTTCTCCCCCTCTCCCCTTTTGTTAAGATCGTTTATCTTTTTCGTCTCCC
TTCTCTGTCTCAAGCTCTCTCTGTCTTTCTCCATCTCCTTCTCCGTCTCT
CATACCCTCTTTGTCCCTCTGCCTCTTCCTCCCTCCCCCGCTGGCTCTCA
CCTCGGTGTTTGCCATCGGGATTGGGTTTTCGTCGCTTGGCAACGACGTT
GTAAAACAAGCCAATTCACTCCGTGAATGCGACGCTGGAGATCGAAGCAA
GTCCAGAAACCGGCTCATCATATTCTTCTCGCTTTGTTGTTGACGTTGGG
GGGACGGTTCATACCAGGGGGGGACGGCCGGGGCAAAAGGGTAGGGTTTG
AACAAGGAGGGAAGGATCGTCGTTCCCTCTGCCTGGTTCCGCCTAGGTGC
ATCTTCCGTCGCCTGCACTCTTTGTCTTTCTCCCCCTCTCCCCTTTTGTT
AAGATCGTTTATCTTTTTCGTCTCCCTTCTCTGTCTCAAGCTCTCTCTGT
CTTTCTCCATCTCCTTCTCCGTCTCTCATACCCTCTTTGTCCCTCTGCCT
CTTCCTCCCTCCCCCGCTGGCTCTCACCTCGGTGTTTGCCATCGGGATTG
GGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCAATTCACTCCGT
GA
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