mRNA_P-fluviatile_contig1.17.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.17.1
Unique NamemRNA_P-fluviatile_contig1.17.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:204508..205199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size693
Cds size555
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.74092-UTR-P-fluviatile_contig1:204507..2046441622815268.74092-UTR-P-fluviatile_contig1:204507..204644Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 204508..204644 +
1693561317.9233766-UTR-P-fluviatile_contig1:204507..2046441693561317.9233766-UTR-P-fluviatile_contig1:204507..204644Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 204508..204644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.7523859-CDS-P-fluviatile_contig1:204644..2051991622815268.7523859-CDS-P-fluviatile_contig1:204644..205199Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 204645..205199 +
1693561317.9312344-CDS-P-fluviatile_contig1:204644..2051991693561317.9312344-CDS-P-fluviatile_contig1:204644..205199Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 204645..205199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.17.1prot_P-fluviatile_contig1.17.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 204645..205199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.17.1

>prot_P-fluviatile_contig1.17.1 ID=prot_P-fluviatile_contig1.17.1|Name=mRNA_P-fluviatile_contig1.17.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=185bp
MSARGGGRCPYYMLSPWQFCKGADFWQLFDSFCGSGVCAIRRDVSCVRLW
KRGRCFESCCSARERWGTSVLVGRIDKVTWLKQCIRYSSGRLPSSKFSHK
VVQNFERRLITGFSFVGDHRRVFLERILWVTFAFCSKSNSSTWIALAGLP
ASRVCMYIPTSLCSSGPPDWGCPKSTIAVQVVESA
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mRNA from alignment at P-fluviatile_contig1:204508..205199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.17.1 ID=mRNA_P-fluviatile_contig1.17.1|Name=mRNA_P-fluviatile_contig1.17.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=692bp|location=Sequence derived from alignment at P-fluviatile_contig1:204508..205199+ (Porterinema fluviatile SAG_2381)
TCCCTCGCCCTCGGCTACGGCTTTACGCAGACCACCGGCCGGGGGGCATG
GCCGCCGGGTCTATCCCACCTCTCGGTGGACCGATGGTACCCGCTGTCCC
GGCAAGGGCTGCCCAACGGTGTGCGCATTGAGCTGACATGAGCGCTCGCG
GGGGCGGGCGGTGCCCTTACTATATGCTTTCGCCGTGGCAGTTTTGTAAG
GGGGCTGATTTTTGGCAGCTCTTCGATTCGTTTTGCGGATCAGGCGTGTG
CGCCATTAGACGTGACGTAAGTTGTGTTCGCCTCTGGAAACGAGGGAGGT
GTTTCGAGAGCTGTTGTTCCGCTCGCGAGCGTTGGGGGACTTCGGTGTTG
GTCGGACGGATTGACAAAGTCACCTGGTTGAAGCAGTGTATCCGTTACTC
ATCAGGGCGTTTGCCTTCGAGCAAGTTCTCCCACAAAGTGGTGCAGAATT
TTGAGAGGCGGTTGATCACCGGCTTCTCTTTTGTGGGTGACCATCGGCGC
GTTTTCCTAGAGAGAATACTCTGGGTGACGTTTGCTTTTTGCAGCAAGTC
AAATTCCTCCACGTGGATAGCATTGGCGGGATTGCCGGCTTCGCGAGTGT
GCATGTACATACCCACCAGCCTTTGTTCCAGCGGACCCCCTGATTGGGGG
TGCCCGAAGTCCACGATTGCTGTCCAGGTTGTTGAAAGCGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:204508..205199+

>mRNA_P-fluviatile_contig1.17.1 ID=mRNA_P-fluviatile_contig1.17.1|Name=mRNA_P-fluviatile_contig1.17.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1110bp|location=Sequence derived from alignment at P-fluviatile_contig1:204508..205199+ (Porterinema fluviatile SAG_2381)
ATGAGCGCTCGCGGGGGCGGGCGGTGCCCTTACTATATGCTTTCGCCGTG
GCAGTTTTGTAAGGGGGCTGATTTTTGGCAGCTCTTCGATTCGTTTTGCG
GATCAGGCGTGTGCGCCATTAGACGTGACGTAAGTTGTGTTCGCCTCTGG
AAACGAGGGAGGTGTTTCGAGAGCTGTTGTTCCGCTCGCGAGCGTTGGGG
GACTTCGGTGTTGGTCGGACGGATTGACAAAGTCACCTGGTTGAAGCAGT
GTATCCGTTACTCATCAGGGCGTTTGCCTTCGAGCAAGTTCTCCCACAAA
GTGGTGCAGAATTTTGAGAGGCGGTTGATCACCGGCTTCTCTTTTGTGGG
TGACCATCGGCGCGTTTTCCTAGAGAGAATACTCTGGGTGACGTTTGCTT
TTTGCAGCAAGTCAAATTCCTCCACGTGGATAGCATTGGCGGGATTGCCG
GCTTCGCGAGTGTGCATGTACATACCCACCAGCCTTTGTTCCAGCGGACC
CCCTGATTGGGGGTGCCCGAAGTCCACGATTGCTGTCCAGGTTGTTGAAA
GCGCGATGAGCGCTCGCGGGGGCGGGCGGTGCCCTTACTATATGCTTTCG
CCGTGGCAGTTTTGTAAGGGGGCTGATTTTTGGCAGCTCTTCGATTCGTT
TTGCGGATCAGGCGTGTGCGCCATTAGACGTGACGTAAGTTGTGTTCGCC
TCTGGAAACGAGGGAGGTGTTTCGAGAGCTGTTGTTCCGCTCGCGAGCGT
TGGGGGACTTCGGTGTTGGTCGGACGGATTGACAAAGTCACCTGGTTGAA
GCAGTGTATCCGTTACTCATCAGGGCGTTTGCCTTCGAGCAAGTTCTCCC
ACAAAGTGGTGCAGAATTTTGAGAGGCGGTTGATCACCGGCTTCTCTTTT
GTGGGTGACCATCGGCGCGTTTTCCTAGAGAGAATACTCTGGGTGACGTT
TGCTTTTTGCAGCAAGTCAAATTCCTCCACGTGGATAGCATTGGCGGGAT
TGCCGGCTTCGCGAGTGTGCATGTACATACCCACCAGCCTTTGTTCCAGC
GGACCCCCTGATTGGGGGTGCCCGAAGTCCACGATTGCTGTCCAGGTTGT
TGAAAGCGCG
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