mRNA_P-fluviatile_contig1.598.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.598.1
Unique NamemRNA_P-fluviatile_contig1.598.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.598.1 vs. uniprot
Match: D8LP49_ECTSI (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP49_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 9.130e-22
Identity = 58/169 (34.32%), Postives = 90/169 (53.25%), Query Frame = 1 
Query:    4 TQVANVDFLIEIIWLLPGAIPDDVRRKMCHAVCRLCDGDASLVTDTEARHIAMREASLRAHAQ-----GGEK-----DNMPAGFELLGVQDQQELAKEMVQQFLKGGDQDLRRKALELEERKISLKRKHCDTVIYMYQSLEELDITLDSRAQVHILDTIAQITKPDNSE 480
            T VA+   LIEI+WLLPG      RR+    VCRL  GD SLV++ EARH  ++        Q     G E+     D MPAGF+ L   D+ ++AK M+ Q LK GDQ              +LKRK  D +++ Y++++++ + LD R  + + D++  +++ +  E
Sbjct:   68 TPVADAKTLIEIVWLLPGKKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGREEAVETFDGMPAGFKYLSETDRAQVAKRMIDQQLKAGDQ--------------ALKRKRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQNTVE 222
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BLAST of mRNA_P-fluviatile_contig1.598.1 vs. uniprot
Match: A0A6H5K2U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.540e-16
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    4 TQVANVDFLIEIIWLLPGAIPDDVRRKMCHAVCRLCDGDASLVTDTEARHIAMREASLRAHAQGGEKD---NMPAGFELL 234
            T VA V+ L+EI+WLLPG I DDVRR + H VC+   GD  LV ++E RHIAMREASL A+A     D   ++P G+  L
Sbjct:   61 TLVAGVNMLVEIVWLLPGVIADDVRRDISHKVCKALGGDTRLVEESETRHIAMREASLHANASKVATDQSRDIPPGYSFL 140
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BLAST of mRNA_P-fluviatile_contig1.598.1 vs. uniprot
Match: B5LWG0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG0_9PHYC)

HSP 1 Score: 51.6 bits (122), Expect = 4.400e-5
Identity = 40/142 (28.17%), Postives = 69/142 (48.59%), Query Frame = 1 
Query:   28 LIEIIWLLPGAIPDDVRRKMCHAVCRLCDGDASLVTDTEARHIAMREASLRAHAQG-----GEKDNMPAGFELLGVQDQQELAKEMVQQFLKGGDQDLRRKALELEERKISLKRKHCDTVIYMYQSLEELDITLDSRAQVHI 438
            L+ I++LLPG I  D RRK    +CR+  GD +L+++ E    A++  S     Q      G  +N          ++ QE  +     FL+   QDL       + +K +LKR+ C  ++  Y+ L ++ + LD R +++I
Sbjct:    3 LVGIVFLLPGKIARDFRRKSAAKICRILGGDLTLISEIEQHRNALQSTSEGRATQAFLLNTGSSENS---------RNMQECWRYSFI-FLELSKQDL-------DCKKQALKRQRCKDMVDQYKILVDIGVKLDDRTKMNI 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LP49_ECTSI9.130e-2234.32EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5K2U9_9PHAE4.540e-1652.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LWG0_9PHYC4.400e-528.17Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6421397..6422023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue8.2e-11
Seed eggNOG ortholog2880.D8LP49
EggNOG OGs2EUDG@1,2SWJG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size627
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.598.1prot_P-fluviatile_contig1.598.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6421481..6421885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815356.6959367-UTR-P-fluviatile_contig1:6421396..64214801622815356.6959367-UTR-P-fluviatile_contig1:6421396..6421480Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6421397..6421480 +
1693561583.4518712-UTR-P-fluviatile_contig1:6421396..64214801693561583.4518712-UTR-P-fluviatile_contig1:6421396..6421480Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6421397..6421480 +
1622815356.7164109-UTR-P-fluviatile_contig1:6421885..64220231622815356.7164109-UTR-P-fluviatile_contig1:6421885..6422023Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6421886..6422023 +
1693561583.4827707-UTR-P-fluviatile_contig1:6421885..64220231693561583.4827707-UTR-P-fluviatile_contig1:6421885..6422023Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6421886..6422023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815356.7073402-CDS-P-fluviatile_contig1:6421480..64218851622815356.7073402-CDS-P-fluviatile_contig1:6421480..6421885Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6421481..6421885 +
1693561583.4724112-CDS-P-fluviatile_contig1:6421480..64218851693561583.4724112-CDS-P-fluviatile_contig1:6421480..6421885Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6421481..6421885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.598.1

>prot_P-fluviatile_contig1.598.1 ID=prot_P-fluviatile_contig1.598.1|Name=mRNA_P-fluviatile_contig1.598.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=135bp
MCHAVCRLCDGDASLVTDTEARHIAMREASLRAHAQGGEKDNMPAGFELL
GVQDQQELAKEMVQQFLKGGDQDLRRKALELEERKISLKRKHCDTVIYMY
QSLEELDITLDSRAQVHILDTIAQITKPDNSEVV*
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mRNA from alignment at P-fluviatile_contig1:6421397..6422023+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.598.1 ID=mRNA_P-fluviatile_contig1.598.1|Name=mRNA_P-fluviatile_contig1.598.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=627bp|location=Sequence derived from alignment at P-fluviatile_contig1:6421397..6422023+ (Porterinema fluviatile SAG_2381)
TATACGCAAGTCGCGAACGTTGATTTTCTGATCGAAATCATCTGGTTGCT
ACCGGGCGCAATCCCGGACGACGTTCGCCGGAAGATGTGCCACGCGGTGT
GCCGTTTGTGCGACGGGGATGCAAGCCTGGTGACCGATACTGAGGCGCGT
CATATCGCTATGCGAGAGGCGAGCCTACGCGCCCACGCTCAGGGGGGCGA
GAAGGACAACATGCCGGCCGGCTTTGAGCTTTTAGGGGTCCAAGATCAAC
AAGAGCTCGCAAAGGAAATGGTGCAACAGTTCCTCAAGGGCGGGGATCAA
GACCTCCGGCGGAAGGCCCTCGAACTTGAAGAACGGAAGATCTCGCTAAA
ACGCAAACACTGTGACACTGTTATCTATATGTACCAATCCTTGGAGGAGC
TTGATATCACGCTCGATTCGCGCGCTCAAGTTCACATTTTAGACACGATA
GCCCAAATCACCAAACCAGACAATAGCGAGGTGGTGTAACCTAAATTAAT
ATTTGCACCAAACTTTCGCAGCTAAAACACCATTCACTCTAACCACAAAC
TGCGACAAAGATGTTGGCTTGGCTCATCGGATGCAGCACACACGGCGTTT
CGCAGGAAATGCTGGCGAAAACGAAAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:6421397..6422023+

>mRNA_P-fluviatile_contig1.598.1 ID=mRNA_P-fluviatile_contig1.598.1|Name=mRNA_P-fluviatile_contig1.598.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=810bp|location=Sequence derived from alignment at P-fluviatile_contig1:6421397..6422023+ (Porterinema fluviatile SAG_2381)
ATGTGCCACGCGGTGTGCCGTTTGTGCGACGGGGATGCAAGCCTGGTGAC
CGATACTGAGGCGCGTCATATCGCTATGCGAGAGGCGAGCCTACGCGCCC
ACGCTCAGGGGGGCGAGAAGGACAACATGCCGGCCGGCTTTGAGCTTTTA
GGGGTCCAAGATCAACAAGAGCTCGCAAAGGAAATGGTGCAACAGTTCCT
CAAGGGCGGGGATCAAGACCTCCGGCGGAAGGCCCTCGAACTTGAAGAAC
GGAAGATCTCGCTAAAACGCAAACACTGTGACACTGTTATCTATATGTAC
CAATCCTTGGAGGAGCTTGATATCACGCTCGATTCGCGCGCTCAAGTTCA
CATTTTAGACACGATAGCCCAAATCACCAAACCAGACAATAGCGAGGTGG
TGTAAATGTGCCACGCGGTGTGCCGTTTGTGCGACGGGGATGCAAGCCTG
GTGACCGATACTGAGGCGCGTCATATCGCTATGCGAGAGGCGAGCCTACG
CGCCCACGCTCAGGGGGGCGAGAAGGACAACATGCCGGCCGGCTTTGAGC
TTTTAGGGGTCCAAGATCAACAAGAGCTCGCAAAGGAAATGGTGCAACAG
TTCCTCAAGGGCGGGGATCAAGACCTCCGGCGGAAGGCCCTCGAACTTGA
AGAACGGAAGATCTCGCTAAAACGCAAACACTGTGACACTGTTATCTATA
TGTACCAATCCTTGGAGGAGCTTGATATCACGCTCGATTCGCGCGCTCAA
GTTCACATTTTAGACACGATAGCCCAAATCACCAAACCAGACAATAGCGA
GGTGGTGTAA
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