mRNA_P-fluviatile_contig1.44.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.44.1
Unique NamemRNA_P-fluviatile_contig1.44.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:751753..753702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size348
Cds size333
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.44.1prot_P-fluviatile_contig1.44.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 751753..753688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815262.9009435-CDS-P-fluviatile_contig1:751752..7518041622815262.9009435-CDS-P-fluviatile_contig1:751752..751804Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 751753..751804 +
1693561243.7570837-CDS-P-fluviatile_contig1:751752..7518041693561243.7570837-CDS-P-fluviatile_contig1:751752..751804Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 751753..751804 +
1622815262.9155958-CDS-P-fluviatile_contig1:753407..7536881622815262.9155958-CDS-P-fluviatile_contig1:753407..753688Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 753408..753688 +
1693561244.5174754-CDS-P-fluviatile_contig1:753407..7536881693561244.5174754-CDS-P-fluviatile_contig1:753407..753688Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 753408..753688 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815262.9321046-UTR-P-fluviatile_contig1:753688..7537021622815262.9321046-UTR-P-fluviatile_contig1:753688..753702Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 753689..753702 +
1693561244.8286684-UTR-P-fluviatile_contig1:753688..7537021693561244.8286684-UTR-P-fluviatile_contig1:753688..753702Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 753689..753702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.44.1

>prot_P-fluviatile_contig1.44.1 ID=prot_P-fluviatile_contig1.44.1|Name=mRNA_P-fluviatile_contig1.44.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
GGRRTELRIRLGSSNANGDGGPFHGEKIAYVRCEEADGDGAAARDEDDEY
DDDEDDAGPSYSEEHSLGWFCVFSFRHPPIAKNLYLRMHPASRLERPGDW
LFSLVMFPRR*
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mRNA from alignment at P-fluviatile_contig1:751753..753702+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.44.1 ID=mRNA_P-fluviatile_contig1.44.1|Name=mRNA_P-fluviatile_contig1.44.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1950bp|location=Sequence derived from alignment at P-fluviatile_contig1:751753..753702+ (Porterinema fluviatile SAG_2381)
GGGGGAAGGCGGACGGAATTGAGGATCCGATTAGGCAGCTCAAATGCAAA
TGGTGAGGTGATGCATAGTTTGGGGGGCGGGCCGTGGCGCATCCATGTGC
TTGGGAAAAGGCAAATCAACACGGCGGTGCAGCAGGACCTTATCTCTGCC
GCTGCTTAGGCAAGATCGTCGTCTTCATCGGGTTTTTGTTGCCCATCGCT
ATTGTCGGAAGATGGAGGGGGGGGTGTACTCATAGTTGTGCATGCCGTAG
TCGTTAGACCATTGACCTCGCATCCCTACAAAGCCGGGACGGAGCACGCC
GGGTTCTCACCGGACCAGGCTCTCACACCACCAAGTGCGAAGCGCCGTGA
AGTATTCGGCGAGTCGCATGAAGGGTGCACTGCATCCTGCTAAGGGTGTT
CGGCATCTTGTGCTTACTTCCTTGCATACGGATGACAGCTGCGTATGGCT
TAATTTATTTTCTGGTGCTTTCACTTCCAGAGACAGTTGTAAGCACTGTG
TAGCTGCCTCGAGGGTGCTTGACCATTTTATCACAACGTGGTGCGCTCAT
CCCCCTTGCGCGGAGTGAGGATTCTCCACTCCGCACAACATGATCTTCTC
GACCACCATTATGGTAACCGCCAAACAAACCAGAGGAAAAAAAAGACGGT
AACCTGGTTGCCGAGTTCACGAAGTGAATTGGCTTGTTTTACAACGTCGT
TGCCAAGCGACGAAAACCCCATCCCGATGGCAAACACCGAGGTAAGAGCC
AGCGGGAGGGAAATGATGGCGGGGGGGGAGTAAACAAATCTAGAGGAAAT
GAACCCCCTTGGCTACCTTCCGCCTGCTATGTCGTGTTTCCTTTTTCCGA
GCGGCGAACACCAGCGCCGGGGTATGTGGGCCGAAAACAACAGCGATAGC
AACAATAACGGAGACGAGGAAGGCATCATTCGCTCATGCCAGGCACCGAT
TTCAAACAAGAAAAAGGAGTCCGTATAGATAAGTGCTTCAACCTCGAAGT
GCTCAAATTTCAAGCGAATACTTCTGGCCCTGTTCTTAGTTTCTTCTTTT
GAAACACGAGAATAAAGTGTTTTCGTGCCTGCGGTGACTGCACGTGTTCG
CTCGTTGGCTTTCGCTCTCGGAAGATTCAACCTCACAGCGGAAGCGAGGG
ACAGACCGTCAGCATCAGGAATAAAAAACCCCAAGATATGGTGCTCAGGC
GAAGTTTCTCTTCTTTGCTCAGGGCCGTGTTAAGAAAACACGTGGTGCCT
GTTTGCCGAAGGGCACGCGACCGAACAGCGCACTCCCCTTCTCAGCAGAG
GTTAGATCGACGGAGCCCCGACCGGCTTCGATTCCGTCTACCCGTTGCTC
TGCGCCCTCCACGCGCGAGCGGTCGGAGCTCGCGCGCTTCATCGTATTTA
TCCCGCGAAAGCGGCCGCCGCCGTCGACGACAACGACGCCGACAAAAAAA
CACCAGGCATCAGCTTGGTAGTCCGAGTGCTTCTCTTTTTACGCGCAGCT
CTTGTGCCTCACTCCCCTTCTCGCCCCAGCACAAAGGCTCTTGAGCCGTG
AGAGGGTGTCGCTGCCGATGATCGCCTGTCGCTCCTCGTGCTTGCCGTGG
ACGAGGAAAGGTGAAGCGGTCGACCTTCGCGCTGTTCCATTGCTGGCCGT
TCCAGGTGACGGGGGGCCTTTTCATGGCGAGAAGATTGCTTATGTTCGCT
GCGAAGAAGCCGATGGTGACGGTGCTGCTGCTCGCGATGAAGATGATGAA
TACGATGATGATGAAGACGATGCCGGGCCGTCTTACAGCGAGGAGCACTC
ACTCGGTTGGTTTTGCGTATTTTCTTTCCGGCACCCTCCCATCGCTAAAA
ATCTGTACCTGAGAATGCATCCAGCTTCACGGCTGGAAAGACCGGGCGAC
TGGCTATTTTCTCTCGTGATGTTTCCTCGGCGGTGAGACCCGGAGGCCCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:751753..753702+

>mRNA_P-fluviatile_contig1.44.1 ID=mRNA_P-fluviatile_contig1.44.1|Name=mRNA_P-fluviatile_contig1.44.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig1:751753..753702+ (Porterinema fluviatile SAG_2381)
GGGGGAAGGCGGACGGAATTGAGGATCCGATTAGGCAGCTCAAATGCAAA
TGGGGGGAAGGCGGACGGAATTGAGGATCCGATTAGGCAGCTCAAATGCA
AATGGTGACGGGGGGCCTTTTCATGGCGAGAAGATTGCTTATGTTCGCTG
CGAAGAAGCCGATGGTGACGGTGCTGCTGCTCGCGATGAAGATGATGAAT
ACGATGATGATGAAGACGATGCCGGGCCGTCTTACAGCGAGGAGCACTCA
CTCGGTTGGTTTTGCGTATTTTCTTTCCGGCACCCTCCCATCGCTAAAAA
TCTGTACCTGAGAATGCATCCAGCTTCACGGCTGGAAAGACCGGGCGACT
GGCTATTTTCTCTCGTGATGTTTCCTCGGCGGTGAGTGACGGGGGGCCTT
TTCATGGCGAGAAGATTGCTTATGTTCGCTGCGAAGAAGCCGATGGTGAC
GGTGCTGCTGCTCGCGATGAAGATGATGAATACGATGATGATGAAGACGA
TGCCGGGCCGTCTTACAGCGAGGAGCACTCACTCGGTTGGTTTTGCGTAT
TTTCTTTCCGGCACCCTCCCATCGCTAAAAATCTGTACCTGAGAATGCAT
CCAGCTTCACGGCTGGAAAGACCGGGCGACTGGCTATTTTCTCTCGTGAT
GTTTCCTCGGCGGTGA
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