mRNA_P-fluviatile_contig1.5.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.5.1
Unique NamemRNA_P-fluviatile_contig1.5.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:54723..57413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2691
Cds size1569
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.5.1prot_P-fluviatile_contig1.5.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 54783..56351 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.608385-UTR-P-fluviatile_contig1:54722..547821622815268.608385-UTR-P-fluviatile_contig1:54722..54782Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 54723..54782 +
1693561317.4592476-UTR-P-fluviatile_contig1:54722..547821693561317.4592476-UTR-P-fluviatile_contig1:54722..54782Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 54723..54782 +
1622815268.6320486-UTR-P-fluviatile_contig1:56351..574131622815268.6320486-UTR-P-fluviatile_contig1:56351..57413Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 56352..57413 +
1693561317.6749978-UTR-P-fluviatile_contig1:56351..574131693561317.6749978-UTR-P-fluviatile_contig1:56351..57413Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 56352..57413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.6204772-CDS-P-fluviatile_contig1:54782..563511622815268.6204772-CDS-P-fluviatile_contig1:54782..56351Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 54783..56351 +
1693561317.5680246-CDS-P-fluviatile_contig1:54782..563511693561317.5680246-CDS-P-fluviatile_contig1:54782..56351Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 54783..56351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.5.1

>prot_P-fluviatile_contig1.5.1 ID=prot_P-fluviatile_contig1.5.1|Name=mRNA_P-fluviatile_contig1.5.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=523bp
MPSRCSYGGCKTGPSYGDPVKKKAEYCSSHAKDGMVNVRDRRCAHTGCGT
RPSYGVEGSKRPEYCAPHAPPGTVDILSKRCARKGCLKKPSYGIPGTRVV
EFCIEHAEHGMVNVRIKKCAYAGCGTMPSYGEAGAKRPKFCSRHAREGMT
NLHSKKCRHAGCAKQPSYGMGGTTRAEYCCEHAPPGLGLVNVRMKKCGFR
DCPRQPSYCANGSRTAEFCAEHAKDGMLIRKRRCHHAGCTVPALFGGKGP
GSVAFCPSHAEDGMPPLAMVPRQQRRGEPGVEIPVSSTGAAAASAGGVGH
NCVDLAAGVGADAAGKRAAEEFPDGASDATKRVRHFLGPIPVLSAPPTAA
AAGFPAAQAAAAGLPASATERSAAAFLGAAVPEAVAPSTPIAPVAHYITT
AFPAGVAEPPPATAFPTIFTSAAIASAAATAAAAAASEIETTKTTAAATL
YNRPGSPLVSDDDDPVDDDEDAASEIDVVGLGQQSGDDGSDVDDLFGPSR
RRVESAAGTRPIFPVGEEHIRV*
back to top

mRNA from alignment at P-fluviatile_contig1:54723..57413+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.5.1 ID=mRNA_P-fluviatile_contig1.5.1|Name=mRNA_P-fluviatile_contig1.5.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2691bp|location=Sequence derived from alignment at P-fluviatile_contig1:54723..57413+ (Porterinema fluviatile SAG_2381)
ACCAGCTACCGCGGCGGGTACAACACCCACCACCAGAGCCCATAGACAAG
ACAGGAAAGTATGCCGAGTAGATGCAGCTACGGAGGCTGTAAGACAGGTC
CATCCTACGGTGACCCTGTTAAGAAGAAGGCCGAATACTGCTCTTCACAC
GCCAAGGACGGCATGGTCAATGTCCGAGACAGAAGGTGTGCCCACACCGG
GTGCGGTACGAGGCCGTCTTACGGCGTAGAGGGGAGCAAGAGGCCCGAGT
ACTGCGCACCCCACGCCCCCCCGGGTACGGTGGACATCCTCAGCAAGAGG
TGCGCTCGCAAAGGCTGCCTCAAGAAGCCTTCTTACGGAATTCCGGGAAC
CAGGGTGGTCGAGTTCTGCATTGAGCACGCCGAGCACGGCATGGTCAACG
TCCGCATCAAGAAGTGCGCCTACGCCGGCTGCGGCACGATGCCAAGCTAC
GGCGAGGCCGGGGCCAAGAGGCCCAAGTTCTGCTCGCGGCACGCACGGGA
GGGCATGACTAATCTCCACAGCAAGAAGTGCAGGCACGCCGGCTGCGCCA
AGCAGCCCTCATACGGGATGGGCGGCACCACCCGGGCAGAGTACTGCTGC
GAGCACGCGCCGCCGGGGCTGGGTTTGGTGAACGTCCGCATGAAGAAGTG
CGGGTTCCGGGACTGCCCGCGGCAGCCCTCCTACTGCGCGAACGGCTCCA
GGACGGCCGAGTTCTGCGCGGAGCACGCGAAGGACGGCATGCTCATCCGC
AAGCGGAGGTGCCACCACGCGGGGTGCACTGTGCCGGCGTTGTTCGGCGG
CAAGGGCCCAGGCAGTGTGGCGTTTTGCCCGTCCCACGCCGAGGACGGCA
TGCCACCCCTGGCCATGGTCCCGAGACAGCAGCGCCGCGGCGAGCCCGGA
GTCGAAATTCCTGTCTCCTCTACCGGCGCCGCCGCTGCCTCTGCAGGTGG
CGTCGGCCACAATTGTGTGGATTTGGCGGCGGGGGTCGGCGCCGACGCCG
CCGGCAAGCGGGCCGCCGAAGAGTTCCCCGACGGCGCTAGCGATGCGACC
AAACGAGTCCGCCACTTCCTCGGCCCCATCCCTGTGCTCTCAGCTCCCCC
GACCGCGGCAGCAGCAGGGTTTCCGGCTGCCCAAGCCGCCGCCGCAGGGC
TCCCGGCCTCCGCCACAGAGCGTTCGGCCGCCGCCTTTCTTGGCGCTGCT
GTTCCTGAAGCTGTTGCCCCCTCGACCCCCATTGCCCCCGTCGCGCATTA
TATCACCACAGCGTTCCCGGCCGGCGTCGCTGAACCTCCGCCGGCTACCG
CTTTTCCTACGATATTCACCTCCGCCGCCATCGCCTCGGCCGCCGCCACC
GCGGCCGCCGCCGCTGCCTCCGAAATCGAGACTACAAAGACGACAGCAGC
AGCGACTCTCTACAATCGGCCGGGTTCGCCGCTGGTGTCGGACGACGACG
ACCCCGTCGACGACGACGAAGACGCGGCGAGCGAGATCGACGTGGTCGGG
TTGGGGCAGCAAAGCGGAGACGACGGTAGCGACGTGGATGACCTGTTCGG
GCCCAGCCGGCGGCGGGTCGAGAGCGCGGCGGGAACCCGCCCCATTTTTC
CGGTCGGGGAAGAGCATATCAGAGTGTGATGGGAGCCGCTGCCGCGGGTG
AGTTCTGTTACGTACTTGCCTGGAGCAGTACGGCTTGAGCCGCGCGGAAT
GTGTCAGAGGTCTGTTGAGGCCTGGCCTCCAGCAGTCACGTGTTGGTTGC
AGTTTTTGGGCCATTGGGTGGTGAGGGAGTACTTCGAAACTCAACGCTGA
GATTTCGTCCTCAAGATGTTTTGCCAAATTTCAAAGCGATGTCGTGAAAT
TCGAGATCAGCGCGGTCGTCGTTCGCTACGCACAATCAGTGGCTCGCTTC
TTTACCCTTGGCCTGCCGACTGTTAGAGGGGTCAGGGTTGTGAATAGGTA
GGGTGGCGTCGAGTCTGCTGAGATGAATGTCCATATTGTCCGTGGTTCCT
CGCTTGCGCGCTAAAGGGTAGGAATGCCCTCCATCTTGCCATGTTCCGGA
GCCCTGCGGCGATGCTGTCACCGGCCCATGTTGCCATAGACGATTGTTTC
TTTCAAATGCCGGAACAGTATGGTGAACTCCAGTAGTAGCAAAGAGGTAG
CGCAGGCAGCAAAACACTTTCGTGCCCGAGGACGCGAGGTGATCGCCGAG
TTGCTCGTGCATATCTGTGACCGACGCATCCATGCAAAATGCGTTTGTGC
ATCTCGTGCGGGTAACAGCCATCACGGGGTACGCGACCCGCTGCCGTGCC
GATACGGACGGTGTTTCAGATGTGAACTGACTTCTGCCCCCGAGCCACCG
CCGCCGCCGCTTCCAAGGCAATGCCGACACCTTCGCTTGCTCTTCCTAAC
TGTCGGTCGATTTCCCTCCCCGTCGGTCTGAGTGTCAACCGTACATGGCA
GAAGGAAGCATATTATCACGCGGGTATTAAATGATCGGCTTTAATTCTTT
CATCGCCGGGTGTGTTTTCGTGTGGGGGTTGCGCTTTCTCTTGTAGCCCT
TTCGTTGCATCCTGCAGTACTTTCTTTCTCGTGATGACCTTCCTGCTTGC
TTCCTCGTGATGGCCCCTGCCGCTACCACGTGGCACCAAATGCACTAGCA
GACGCAGGACAGAGAGAGGAACGGAGGGTGGGAGGAAAGGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:54723..57413+

>mRNA_P-fluviatile_contig1.5.1 ID=mRNA_P-fluviatile_contig1.5.1|Name=mRNA_P-fluviatile_contig1.5.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3138bp|location=Sequence derived from alignment at P-fluviatile_contig1:54723..57413+ (Porterinema fluviatile SAG_2381)
ATGCCGAGTAGATGCAGCTACGGAGGCTGTAAGACAGGTCCATCCTACGG
TGACCCTGTTAAGAAGAAGGCCGAATACTGCTCTTCACACGCCAAGGACG
GCATGGTCAATGTCCGAGACAGAAGGTGTGCCCACACCGGGTGCGGTACG
AGGCCGTCTTACGGCGTAGAGGGGAGCAAGAGGCCCGAGTACTGCGCACC
CCACGCCCCCCCGGGTACGGTGGACATCCTCAGCAAGAGGTGCGCTCGCA
AAGGCTGCCTCAAGAAGCCTTCTTACGGAATTCCGGGAACCAGGGTGGTC
GAGTTCTGCATTGAGCACGCCGAGCACGGCATGGTCAACGTCCGCATCAA
GAAGTGCGCCTACGCCGGCTGCGGCACGATGCCAAGCTACGGCGAGGCCG
GGGCCAAGAGGCCCAAGTTCTGCTCGCGGCACGCACGGGAGGGCATGACT
AATCTCCACAGCAAGAAGTGCAGGCACGCCGGCTGCGCCAAGCAGCCCTC
ATACGGGATGGGCGGCACCACCCGGGCAGAGTACTGCTGCGAGCACGCGC
CGCCGGGGCTGGGTTTGGTGAACGTCCGCATGAAGAAGTGCGGGTTCCGG
GACTGCCCGCGGCAGCCCTCCTACTGCGCGAACGGCTCCAGGACGGCCGA
GTTCTGCGCGGAGCACGCGAAGGACGGCATGCTCATCCGCAAGCGGAGGT
GCCACCACGCGGGGTGCACTGTGCCGGCGTTGTTCGGCGGCAAGGGCCCA
GGCAGTGTGGCGTTTTGCCCGTCCCACGCCGAGGACGGCATGCCACCCCT
GGCCATGGTCCCGAGACAGCAGCGCCGCGGCGAGCCCGGAGTCGAAATTC
CTGTCTCCTCTACCGGCGCCGCCGCTGCCTCTGCAGGTGGCGTCGGCCAC
AATTGTGTGGATTTGGCGGCGGGGGTCGGCGCCGACGCCGCCGGCAAGCG
GGCCGCCGAAGAGTTCCCCGACGGCGCTAGCGATGCGACCAAACGAGTCC
GCCACTTCCTCGGCCCCATCCCTGTGCTCTCAGCTCCCCCGACCGCGGCA
GCAGCAGGGTTTCCGGCTGCCCAAGCCGCCGCCGCAGGGCTCCCGGCCTC
CGCCACAGAGCGTTCGGCCGCCGCCTTTCTTGGCGCTGCTGTTCCTGAAG
CTGTTGCCCCCTCGACCCCCATTGCCCCCGTCGCGCATTATATCACCACA
GCGTTCCCGGCCGGCGTCGCTGAACCTCCGCCGGCTACCGCTTTTCCTAC
GATATTCACCTCCGCCGCCATCGCCTCGGCCGCCGCCACCGCGGCCGCCG
CCGCTGCCTCCGAAATCGAGACTACAAAGACGACAGCAGCAGCGACTCTC
TACAATCGGCCGGGTTCGCCGCTGGTGTCGGACGACGACGACCCCGTCGA
CGACGACGAAGACGCGGCGAGCGAGATCGACGTGGTCGGGTTGGGGCAGC
AAAGCGGAGACGACGGTAGCGACGTGGATGACCTGTTCGGGCCCAGCCGG
CGGCGGGTCGAGAGCGCGGCGGGAACCCGCCCCATTTTTCCGGTCGGGGA
AGAGCATATCAGAGTGTGAATGCCGAGTAGATGCAGCTACGGAGGCTGTA
AGACAGGTCCATCCTACGGTGACCCTGTTAAGAAGAAGGCCGAATACTGC
TCTTCACACGCCAAGGACGGCATGGTCAATGTCCGAGACAGAAGGTGTGC
CCACACCGGGTGCGGTACGAGGCCGTCTTACGGCGTAGAGGGGAGCAAGA
GGCCCGAGTACTGCGCACCCCACGCCCCCCCGGGTACGGTGGACATCCTC
AGCAAGAGGTGCGCTCGCAAAGGCTGCCTCAAGAAGCCTTCTTACGGAAT
TCCGGGAACCAGGGTGGTCGAGTTCTGCATTGAGCACGCCGAGCACGGCA
TGGTCAACGTCCGCATCAAGAAGTGCGCCTACGCCGGCTGCGGCACGATG
CCAAGCTACGGCGAGGCCGGGGCCAAGAGGCCCAAGTTCTGCTCGCGGCA
CGCACGGGAGGGCATGACTAATCTCCACAGCAAGAAGTGCAGGCACGCCG
GCTGCGCCAAGCAGCCCTCATACGGGATGGGCGGCACCACCCGGGCAGAG
TACTGCTGCGAGCACGCGCCGCCGGGGCTGGGTTTGGTGAACGTCCGCAT
GAAGAAGTGCGGGTTCCGGGACTGCCCGCGGCAGCCCTCCTACTGCGCGA
ACGGCTCCAGGACGGCCGAGTTCTGCGCGGAGCACGCGAAGGACGGCATG
CTCATCCGCAAGCGGAGGTGCCACCACGCGGGGTGCACTGTGCCGGCGTT
GTTCGGCGGCAAGGGCCCAGGCAGTGTGGCGTTTTGCCCGTCCCACGCCG
AGGACGGCATGCCACCCCTGGCCATGGTCCCGAGACAGCAGCGCCGCGGC
GAGCCCGGAGTCGAAATTCCTGTCTCCTCTACCGGCGCCGCCGCTGCCTC
TGCAGGTGGCGTCGGCCACAATTGTGTGGATTTGGCGGCGGGGGTCGGCG
CCGACGCCGCCGGCAAGCGGGCCGCCGAAGAGTTCCCCGACGGCGCTAGC
GATGCGACCAAACGAGTCCGCCACTTCCTCGGCCCCATCCCTGTGCTCTC
AGCTCCCCCGACCGCGGCAGCAGCAGGGTTTCCGGCTGCCCAAGCCGCCG
CCGCAGGGCTCCCGGCCTCCGCCACAGAGCGTTCGGCCGCCGCCTTTCTT
GGCGCTGCTGTTCCTGAAGCTGTTGCCCCCTCGACCCCCATTGCCCCCGT
CGCGCATTATATCACCACAGCGTTCCCGGCCGGCGTCGCTGAACCTCCGC
CGGCTACCGCTTTTCCTACGATATTCACCTCCGCCGCCATCGCCTCGGCC
GCCGCCACCGCGGCCGCCGCCGCTGCCTCCGAAATCGAGACTACAAAGAC
GACAGCAGCAGCGACTCTCTACAATCGGCCGGGTTCGCCGCTGGTGTCGG
ACGACGACGACCCCGTCGACGACGACGAAGACGCGGCGAGCGAGATCGAC
GTGGTCGGGTTGGGGCAGCAAAGCGGAGACGACGGTAGCGACGTGGATGA
CCTGTTCGGGCCCAGCCGGCGGCGGGTCGAGAGCGCGGCGGGAACCCGCC
CCATTTTTCCGGTCGGGGAAGAGCATATCAGAGTGTGA
back to top