mRNA_P-fluviatile_contig1.571.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.571.1
Unique NamemRNA_P-fluviatile_contig1.571.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.571.1 vs. uniprot
Match: D7G501_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G501_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.760e-27
Identity = 93/196 (47.45%), Postives = 105/196 (53.57%), Query Frame = 1 
Query:  388 VAELLGLETATK-----RGGGGXX----YGXQXPQXFDGAGDEGMGVSATGGGVDGCVGGSVAVAVHAGSYRVPAEAFLGPPEESTVTWVGFQSVWSGLPYVAAFPVESSCARPHPSAAAAXXXXXSEGGSVGAMLTASSVRLAMMPAS--GGNXXXXXXXXXXXXXXXXXXXRAAAAVACPFGNTDYAVSTAWAF 942
             AELLG+E+  K      GGGG      +G   P    GAGD G         VDG   GSV V + AGSYRVPAEAFLGPPE +  TWVGFQ+VW GL YV A PVES+   P    AAA     +      ++ TAS VRLAMMP S  GG                    R+AAAV CP GNTDYAVS+AW F
Sbjct: 1174 TAELLGVESTEKGRGGDSGGGGSNALSGFGQNQPSFDGGAGDTG---------VDGGGSGSVTVILQAGSYRVPAEAFLGPPERAAATWVGFQNVWCGLAYVTAIPVESARHLPRAITAAAGHEHAAM-----SLRTASGVRLAMMPVSSRGGGGRGCDDA------------RSAAAVECPVGNTDYAVSSAWVF 1343
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G501_ECTSI2.760e-2747.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:6147944..6150231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size2288
Cds size669
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.571.1prot_P-fluviatile_contig1.571.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 6148767..6149435 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815354.200095-UTR-P-fluviatile_contig1:6147943..61487661622815354.200095-UTR-P-fluviatile_contig1:6147943..6148766Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6147944..6148766 +
1693561574.5819452-UTR-P-fluviatile_contig1:6147943..61487661693561574.5819452-UTR-P-fluviatile_contig1:6147943..6148766Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6147944..6148766 +
1622815354.2275267-UTR-P-fluviatile_contig1:6149435..61502311622815354.2275267-UTR-P-fluviatile_contig1:6149435..6150231Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6149436..6150231 +
1693561574.6110704-UTR-P-fluviatile_contig1:6149435..61502311693561574.6110704-UTR-P-fluviatile_contig1:6149435..6150231Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 6149436..6150231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815354.213751-CDS-P-fluviatile_contig1:6148766..61494351622815354.213751-CDS-P-fluviatile_contig1:6148766..6149435Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6148767..6149435 +
1693561574.6010308-CDS-P-fluviatile_contig1:6148766..61494351693561574.6010308-CDS-P-fluviatile_contig1:6148766..6149435Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 6148767..6149435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.571.1

>prot_P-fluviatile_contig1.571.1 ID=prot_P-fluviatile_contig1.571.1|Name=mRNA_P-fluviatile_contig1.571.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=223bp
MALAAAAAAAAAAVAIRGRPRPWRAPSEIRTTRCRLHGRSAWDGTPVLCA
LTAMKAPFYSAAGAGRGGDERQPTWHGRLEVRCATQACSEFAQCNPARFA
RFVTNGVFAPPVAAHRQQELLDPIGGVFLQPAEGGGGGCGGSSSGNGLIG
SHRDWFSRTDTILTSASVEEGGPGAVAAATEAAAAGKWKPIVRVLWEERC
VDTTQPAAARHVRCSNTVEGSA*
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mRNA from alignment at P-fluviatile_contig1:6147944..6150231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.571.1 ID=mRNA_P-fluviatile_contig1.571.1|Name=mRNA_P-fluviatile_contig1.571.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2288bp|location=Sequence derived from alignment at P-fluviatile_contig1:6147944..6150231+ (Porterinema fluviatile SAG_2381)
CCCAAGGGTACCTAGTAAGTCACAAGGCGCACAACATGATCAAGAAACGA
AGCACCTCTCGCTTCCGCCGTTCCGTTGTGCTTCGCGCGTAGATGGTGAA
AATTGACAGTGGTAAGAAGGGTTTGACGAGTAACGGCAGCAGCCTCTCGA
CAACCTGCCTCAGCCTGCTGTCCGTTGGGGCACGACTGCTGTGTGCCTCC
GTTGGGGCACGACTGCTGTGTGCCTCCCGCTGTTCATTATTGTCGACGCC
GAGCCATAACTTCAACGCGCTGCCTTCGCTCGCGCTACTGAGATCCCTCC
GATTCCAACTAGCTGCTAGTCCTGGCCAACAATCCGCCATGTGCTCCCCT
ACTCCCCCCAGCCTGAACCAGAACTTGAGTCCGACGGGTGGCCGAGCTCC
TCGGACTCGAGACCGCAACCAAGCGAGGCGGTGGCGGCGGCGGCTACGGC
GGGCAAGGCCCACAGGGCTTCGACGGCGCCGGCGATGAAGGCATGGGCGT
GAGCGCCACCGGCGGCGGCGTCGACGGTTGTGTCGGCGGCTCGGTGGCGG
TGGCCGTCCACGCCGGGAGCTACCGTGTACCCGCGGAGGCGTTCTTGGGC
CCCCCAGAGGAGTCAACGGTCACCTGGGTCGGGTTCCAGAGCGTGTGGAG
CGGGCTGCCCTATGTGGCTGCGTTTCCGGTAGAGTCATCGTGCGCCCGCC
CGCACCCATCGGCAGCGGCGGCGGCGGCGGCGGGCGCGAGTGAAGGCGGT
AGTGTGGGTGCGATGCTCACGGCGAGTAGCGTGCGGCTCGCTATGATGCC
GGCATCGGGCGGCAACGGGGGGGATGGCGTTGGCGGCGGCAGCGGCAGCG
GCGGCAGCGGCGGTGGCGATTCGCGGGCGGCCGCGGCCGTGGCGTGCCCC
TTCGGAAATACGGACTACGCGGTGTCGACTGCATGGGCGTTCGGCGTGGG
ACGGCACGCCTGTCCTCTGCGCCCTCACAGCGATGAAAGCGCCGTTCTAT
TCCGCCGCAGGCGCTGGTAGGGGCGGGGATGAGCGGCAGCCCACTTGGCA
CGGCAGACTCGAGGTGCGTTGCGCCACGCAAGCATGCTCGGAGTTCGCCC
AATGCAATCCCGCGCGATTCGCGCGATTCGTTACCAACGGGGTTTTCGCG
CCCCCTGTGGCTGCCCACCGACAGCAGGAACTCCTAGACCCGATTGGAGG
TGTGTTTTTGCAGCCGGCCGAAGGCGGCGGGGGCGGCTGTGGCGGCAGCA
GCAGCGGAAATGGATTGATTGGCTCACACCGCGATTGGTTTTCCCGAACG
GACACAATCCTTACGTCGGCCTCGGTCGAGGAAGGTGGACCGGGCGCGGT
GGCGGCGGCGACGGAGGCGGCGGCCGCAGGCAAGTGGAAGCCAATCGTGC
GAGTACTGTGGGAAGAGCGGTGCGTGGATACCACGCAACCGGCGGCGGCG
CGGCACGTTCGCTGCAGCAACACGGTCGAAGGATCGGCGTAGCAGTATGC
GCCTTGGCAATAGGGACATGGCGTTAGGAGAAAGTTGAGGATGAGGGATT
GGTGCATCGAGGGACGGTGGCGGGAGTGCGGAGAGAGAGCGCGCGTTGCA
GCTTTATGCCGTTCCCCCTGCCCCCATATATTTTCCAGTTCGCGGTTGGC
CATGCACAGCGCACGTCCGCTTTTCCGGTGGTGCATTGCGGTCTTGCGGT
GATTGGCAAGGGCGCATAGGGAGGGCATTGTGTTCCCAAGCTTGTTTCGC
TTCTCCTGCTTCGTTCCTTCCGCCGCCTTCTTTCGGTGCAGTTATTGTGG
TTTGTCATGATCTTAAGCTTGCTTGTTGTCTGAAAAGTAAACTCGATGTC
TCAGACGAACACGCGAGCCGCTGTTTCTCCCTCTACTTCGGCGAATCAGG
GTCCTATCATTTTTAATGAAAATGCTTTCGTTTCGAATGTGCGGCGGGTG
GGCGAGAATCAGCAGCAGGCAGCAGTCGCGTTAAAAAGACTGTATAATAG
GTGTTGACACGGGTTGCTGTTGAATGTACCAAGGTTTTCTAACTTTCGGA
TAGTTCAAAACCCTCTTGAGGGTTTGTGTGTGTGTAGATTTGTGTTTGGT
TGATTCGGTATGTTTTTGTCTGCACCGCTTTTAAGCTGGTGTGTAACACG
TCGTATCGGGTGTTGTCGGTACCGGACAGTCTGCTGTGATGTGGTGATTA
ATGCGTATTCTCGAATTGGTGTGTTGGTCGCTGCCGCATCTGTCAGGACA
AGCACCGATTATTTTCCAACGATATTATTTTCTCCCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:6147944..6150231+

>mRNA_P-fluviatile_contig1.571.1 ID=mRNA_P-fluviatile_contig1.571.1|Name=mRNA_P-fluviatile_contig1.571.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1338bp|location=Sequence derived from alignment at P-fluviatile_contig1:6147944..6150231+ (Porterinema fluviatile SAG_2381)
ATGGCGTTGGCGGCGGCAGCGGCAGCGGCGGCAGCGGCGGTGGCGATTCG
CGGGCGGCCGCGGCCGTGGCGTGCCCCTTCGGAAATACGGACTACGCGGT
GTCGACTGCATGGGCGTTCGGCGTGGGACGGCACGCCTGTCCTCTGCGCC
CTCACAGCGATGAAAGCGCCGTTCTATTCCGCCGCAGGCGCTGGTAGGGG
CGGGGATGAGCGGCAGCCCACTTGGCACGGCAGACTCGAGGTGCGTTGCG
CCACGCAAGCATGCTCGGAGTTCGCCCAATGCAATCCCGCGCGATTCGCG
CGATTCGTTACCAACGGGGTTTTCGCGCCCCCTGTGGCTGCCCACCGACA
GCAGGAACTCCTAGACCCGATTGGAGGTGTGTTTTTGCAGCCGGCCGAAG
GCGGCGGGGGCGGCTGTGGCGGCAGCAGCAGCGGAAATGGATTGATTGGC
TCACACCGCGATTGGTTTTCCCGAACGGACACAATCCTTACGTCGGCCTC
GGTCGAGGAAGGTGGACCGGGCGCGGTGGCGGCGGCGACGGAGGCGGCGG
CCGCAGGCAAGTGGAAGCCAATCGTGCGAGTACTGTGGGAAGAGCGGTGC
GTGGATACCACGCAACCGGCGGCGGCGCGGCACGTTCGCTGCAGCAACAC
GGTCGAAGGATCGGCGTAGATGGCGTTGGCGGCGGCAGCGGCAGCGGCGG
CAGCGGCGGTGGCGATTCGCGGGCGGCCGCGGCCGTGGCGTGCCCCTTCG
GAAATACGGACTACGCGGTGTCGACTGCATGGGCGTTCGGCGTGGGACGG
CACGCCTGTCCTCTGCGCCCTCACAGCGATGAAAGCGCCGTTCTATTCCG
CCGCAGGCGCTGGTAGGGGCGGGGATGAGCGGCAGCCCACTTGGCACGGC
AGACTCGAGGTGCGTTGCGCCACGCAAGCATGCTCGGAGTTCGCCCAATG
CAATCCCGCGCGATTCGCGCGATTCGTTACCAACGGGGTTTTCGCGCCCC
CTGTGGCTGCCCACCGACAGCAGGAACTCCTAGACCCGATTGGAGGTGTG
TTTTTGCAGCCGGCCGAAGGCGGCGGGGGCGGCTGTGGCGGCAGCAGCAG
CGGAAATGGATTGATTGGCTCACACCGCGATTGGTTTTCCCGAACGGACA
CAATCCTTACGTCGGCCTCGGTCGAGGAAGGTGGACCGGGCGCGGTGGCG
GCGGCGACGGAGGCGGCGGCCGCAGGCAAGTGGAAGCCAATCGTGCGAGT
ACTGTGGGAAGAGCGGTGCGTGGATACCACGCAACCGGCGGCGGCGCGGC
ACGTTCGCTGCAGCAACACGGTCGAAGGATCGGCGTAG
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