mRNA_P-fluviatile_contig1.525.1 (mRNA) Porterinema fluviatile SAG_2381
|
Overview
Homology
BLAST of mRNA_P-fluviatile_contig1.525.1 vs. uniprot
Match: D7FGQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ4_ECTSI) HSP 1 Score: 584 bits (1506), Expect = 2.460e-199 Identity = 371/652 (56.90%), Postives = 424/652 (65.03%), Query Frame = 1
Query: 1 AKATVTTFAQVLVVAAPFLGES-RAAIMKQVVSMTLDSRCPPALAQALLAALVALADRDPARILQVYASRLCFYCDSQSDPSMQDQVVEVGGMIRALEYFTRVLFAGEQSDLCAQFLYADLTSKPLGDVPFSHHLSEEELNDLLCGQKAFPHVAKLINGCLVSRLASVRRCAYETLSNVSLFAKEHRGPKAFDMLLRLRLGGTEKDARLVGILAALVWEVVFVDEDLQEERVVGSGASGSYGLLDDLFADSVEVRLVAFHSIGRLLFHQWIPGGGGGKNKHTRVNRFERXXXXXXXXXXXXXXXXXXXXXXXXXGTGFELLGSLTSAPISHSGKKGNSTVPPACAEEALLRLSLILPEITADSAGSNGSSGSVSRRRRRFDPRVRAAARSLASGLRSCKRRARHLLARSALLVLDHGLANGSLDGLRERFPPPIRLPPHNGGXXXXXXXXXXXXXXXEGLGRGTRSSSEMSLSSDGQDDVGGELGGRAVGGWGRGRDAAG--------KPPGQGRRLQAFGDPPTGDGGGESDDXXXXXXRGRAGRGAMRLSKDALQYASAVQFLVAILSKEDQVSVTMALESRLVDYFGDGGDDFWARDDEKE*RIGVGSXXXXXXXXXXTSRGGCQIDARAAAAWLAGGVDAASNSGLLE 1929
A ATVTT A VL AA FL ++ + A+MKQ+VSMTLD+ CP ALAQ LLAALVALADRDPA+IL+VY SRLCFYCDSQ+DP+MQDQV EVGGMIRALE+FTRVLF G QSDLCAQFLYAD++S LG FS +LSEE+LNDLLCG+K +PHVA+LINGCL SRLASVRRCAYETLSNV+LFAK HRGPKAFDMLLRLRLGG EKD RL+ +LAALVWEVVFVD+ LQ+ER+VGSG GSYGLLDDLFA+SVEVRLVAFHS+ RLLFH WIP G N+ R + XX L P S G + VP ACAE+A+LR+SLIL E T S N +RRRFDPRVRAAARSLASGLR+ KRRARHLL RS LLV+DHGLANGSLDGLR RFPP XXXX G S MS+SS +D G+ G G +G G AG G+ RR + G G G G G+ RLSKDALQYASAV FLVA+LS+E Q SVT+ +ESRL DYF DG +D W + G+G+ + C +DARAAAAWLAGGVDA +S L E
Sbjct: 63 AAATVTTMAHVLRAAASFLSDNDKEAVMKQIVSMTLDTGCPVALAQELLAALVALADRDPAKILEVYGSRLCFYCDSQTDPNMQDQVAEVGGMIRALEHFTRVLFTGGQSDLCAQFLYADVSSASLGAASFSSNLSEEDLNDLLCGRKDYPHVAQLINGCLASRLASVRRCAYETLSNVALFAKAHRGPKAFDMLLRLRLGGAEKDPRLIAVLAALVWEVVFVDQALQDERLVGSGTPGSYGLLDDLFAESVEVRLVAFHSVSRLLFHAWIPKEGDAVNREPPPPRRQSRRHRSNRGIQEPEGGEEYCDEDNXXXXXXXXXEELRFRPPGRSSSPGYNNVP-ACAEQAVLRVSLILHETT--SVNDN--------KRRRFDPRVRAAARSLASGLRARKRRARHLLERSVLLVVDHGLANGSLDGLRVRFPPXXXX-----------------XXXXXXXXVGLEPPSAMSVSSGDED---GDRGDTDDGTYGAGSGVAGGRFGATGLDDGGRRRRGRELGGRNLGRGAG-------------GGQSTARLSKDALQYASAVHFLVAMLSRERQDSVTLTIESRLADYF-DGDEDLWLMTERGG--TGMGTSSDWRGCGGGSGSRSCNVDARAAAAWLAGGVDAGHSSILAE 667 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.525.1 >prot_P-fluviatile_contig1.525.1 ID=prot_P-fluviatile_contig1.525.1|Name=mRNA_P-fluviatile_contig1.525.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=570bp MKQVVSMTLDSRCPPALAQALLAALVALADRDPARILQVYASRLCFYCDSback to top mRNA from alignment at P-fluviatile_contig1:5739027..5745939+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig1.525.1 ID=mRNA_P-fluviatile_contig1.525.1|Name=mRNA_P-fluviatile_contig1.525.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6913bp|location=Sequence derived from alignment at P-fluviatile_contig1:5739027..5745939+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig1:5739027..5745939+ >mRNA_P-fluviatile_contig1.525.1 ID=mRNA_P-fluviatile_contig1.525.1|Name=mRNA_P-fluviatile_contig1.525.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3420bp|location=Sequence derived from alignment at P-fluviatile_contig1:5739027..5745939+ (Porterinema fluviatile SAG_2381)back to top |