mRNA_P-fluviatile_contig23.5113.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig23.5113.1
Unique NamemRNA_P-fluviatile_contig23.5113.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig23.5113.1 vs. uniprot
Match: A0A6H5J6B2_9PHAE (AAA_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6B2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.920e-16
Identity = 68/167 (40.72%), Postives = 85/167 (50.90%), Query Frame = -2 
Query:   34 GSSSRVIKSTASLPSSPDDEAALDHRPRLPXXXXXXXXXRGLERPSLVPAPLWDRLTREFNASQLRALWAAAASSMEAREERRNAAAIGASSEPCRSGAA-----------AATAGANTRWVGRTATEEDGGIVLLQGPPGTGKTRTIVGVVSVVLARRQESRAAAG 501
            G SS   KS A +P +    +    +   P         +  +RPSLVPA LWDRL++EFN SQLRA+WAAAAS+ EA E+   AAA   +  P     A           AA                     LLQGPPGTGKTRT++GVVS +LARR+E   A+G
Sbjct:  224 GISSSGHKSPAPMPDAGSSSSDFSPKVTCPPEKQQKEQQQTPKRPSLVPAALWDRLSQEFNVSQLRAIWAAAASAREAHEDL--AAAARGNDGPATPETAVLAERRAPVNHAAXXXXXXXXXXXXXXXXXXXXXLLQGPPGTGKTRTVLGVVSAILARREEKDCASG 388
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BLAST of mRNA_P-fluviatile_contig23.5113.1 vs. uniprot
Match: D8LLI3_ECTSI (Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.180e-15
Identity = 62/155 (40.00%), Postives = 80/155 (51.61%), Query Frame = -2 
Query:   52 KSTASLPSSPDDEAALDHRPRLPXXXXXXXXXRGLERPSLVPAPLWDRLTREFNASQLRALWAAAASSMEAREERRNAAAIGASSEPCRSGAAAATAGANTRWVGRTATEEDGGIV------------LLQGPPGTGKTRTIVGVVSVVLARRQE 480
            KS A++P +    + +  +   P            +RPSLVPA LWDRL++EFN SQLRA+WAAAAS+ EA+E+     A  A     R+   AA        V                        LLQGPPGTGKTRT++GVVS +LARR+E
Sbjct:   37 KSPATIPDAGSSSSDVSPKDTCPPEKQQKKRQETPKRPSLVPAALWDRLSQEFNVSQLRAIWAAAASAREAQEDL----AAAARDNDGRATPEAAVLAERRAPVNHAXXXXXXXXXXXXXXXXXXXXXLLQGPPGTGKTRTVLGVVSAILARREE 187
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig23.5113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J6B2_9PHAE2.920e-1640.72AAA_11 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LLI3_ECTSI2.180e-1540.00Presumed helicase required for RNA polymerase II t... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig23contigP-fluviatile_contig23:680472..681117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size646
Cds size510
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815993.869866-UTR-P-fluviatile_contig23:680471..6806071622815993.869866-UTR-P-fluviatile_contig23:680471..680607Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 680472..680607 +
1693563982.0662374-UTR-P-fluviatile_contig23:680471..6806071693563982.0662374-UTR-P-fluviatile_contig23:680471..680607Porterinema fluviatile SAG_2381UTRP-fluviatile_contig23 680472..680607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815993.8802583-CDS-P-fluviatile_contig23:680607..6811171622815993.8802583-CDS-P-fluviatile_contig23:680607..681117Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 680608..681117 +
1693563982.0744126-CDS-P-fluviatile_contig23:680607..6811171693563982.0744126-CDS-P-fluviatile_contig23:680607..681117Porterinema fluviatile SAG_2381CDSP-fluviatile_contig23 680608..681117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig23.5113.1prot_P-fluviatile_contig23.5113.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig23 680608..681117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig23.5113.1

>prot_P-fluviatile_contig23.5113.1 ID=prot_P-fluviatile_contig23.5113.1|Name=mRNA_P-fluviatile_contig23.5113.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=170bp
MPPSSSVAVRPTHLVFAPAVAAAAPDRQGSDDAPIAAAFLRSSRASIELA
AAAHSALSWEALNSRVRRSHSGAGTRLGRSSPRCCCCGGGGGGRRGLWSS
AASSSGDDGNDAVDLMTRLDEPFPFPNSLGSFPLVALARSAAPAAPAATS
CLSFPERFASPPLSPPQRLR
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mRNA from alignment at P-fluviatile_contig23:680472..681117+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig23.5113.1 ID=mRNA_P-fluviatile_contig23.5113.1|Name=mRNA_P-fluviatile_contig23.5113.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=646bp|location=Sequence derived from alignment at P-fluviatile_contig23:680472..681117+ (Porterinema fluviatile SAG_2381)
GCCACCGCCGCCGCCGGCCCCTATGATTTCCGGGCCCGCCGCTGCCCTGC
TTTCCTGCCGACGGGCGAGGACGACGCTAACCACACCGACTATCGTCCGC
GTCTTCCCCGTTCCCGGCGGGCCCTGAAGCAGAACTATGCCTCCGTCCTC
CTCGGTCGCCGTTCGACCCACCCATCTCGTGTTTGCTCCCGCCGTCGCCG
CCGCCGCCCCCGATCGGCAGGGCTCCGATGATGCCCCTATTGCTGCCGCG
TTCCTGCGCTCTTCCCGGGCCTCCATCGAGCTTGCCGCCGCCGCCCACAG
CGCCCTAAGCTGGGAAGCGTTGAACTCCCGCGTGAGACGGTCCCACAGCG
GAGCGGGCACCAGGCTCGGCCGTTCGAGCCCACGCTGCTGCTGCTGCGGC
GGCGGCGGCGGTGGCAGACGGGGTCTGTGGTCCAGTGCGGCTTCATCATC
TGGCGACGACGGCAACGACGCGGTCGACTTGATGACTCGGCTCGACGAAC
CCTTCCCCTTTCCAAACTCCTTGGGCTCCTTCCCCTTGGTCGCTCTGGCT
CGCTCCGCCGCTCCCGCCGCCCCCGCCGCCACGTCGTGTTTGTCGTTCCC
CGAGCGCTTTGCATCCCCGCCGCTCTCACCACCACAACGACTACGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig23:680472..681117+

>mRNA_P-fluviatile_contig23.5113.1 ID=mRNA_P-fluviatile_contig23.5113.1|Name=mRNA_P-fluviatile_contig23.5113.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1020bp|location=Sequence derived from alignment at P-fluviatile_contig23:680472..681117+ (Porterinema fluviatile SAG_2381)
ATGCCTCCGTCCTCCTCGGTCGCCGTTCGACCCACCCATCTCGTGTTTGC
TCCCGCCGTCGCCGCCGCCGCCCCCGATCGGCAGGGCTCCGATGATGCCC
CTATTGCTGCCGCGTTCCTGCGCTCTTCCCGGGCCTCCATCGAGCTTGCC
GCCGCCGCCCACAGCGCCCTAAGCTGGGAAGCGTTGAACTCCCGCGTGAG
ACGGTCCCACAGCGGAGCGGGCACCAGGCTCGGCCGTTCGAGCCCACGCT
GCTGCTGCTGCGGCGGCGGCGGCGGTGGCAGACGGGGTCTGTGGTCCAGT
GCGGCTTCATCATCTGGCGACGACGGCAACGACGCGGTCGACTTGATGAC
TCGGCTCGACGAACCCTTCCCCTTTCCAAACTCCTTGGGCTCCTTCCCCT
TGGTCGCTCTGGCTCGCTCCGCCGCTCCCGCCGCCCCCGCCGCCACGTCG
TGTTTGTCGTTCCCCGAGCGCTTTGCATCCCCGCCGCTCTCACCACCACA
ACGACTACGGATGCCTCCGTCCTCCTCGGTCGCCGTTCGACCCACCCATC
TCGTGTTTGCTCCCGCCGTCGCCGCCGCCGCCCCCGATCGGCAGGGCTCC
GATGATGCCCCTATTGCTGCCGCGTTCCTGCGCTCTTCCCGGGCCTCCAT
CGAGCTTGCCGCCGCCGCCCACAGCGCCCTAAGCTGGGAAGCGTTGAACT
CCCGCGTGAGACGGTCCCACAGCGGAGCGGGCACCAGGCTCGGCCGTTCG
AGCCCACGCTGCTGCTGCTGCGGCGGCGGCGGCGGTGGCAGACGGGGTCT
GTGGTCCAGTGCGGCTTCATCATCTGGCGACGACGGCAACGACGCGGTCG
ACTTGATGACTCGGCTCGACGAACCCTTCCCCTTTCCAAACTCCTTGGGC
TCCTTCCCCTTGGTCGCTCTGGCTCGCTCCGCCGCTCCCGCCGCCCCCGC
CGCCACGTCGTGTTTGTCGTTCCCCGAGCGCTTTGCATCCCCGCCGCTCT
CACCACCACAACGACTACGG
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