mRNA_P-fluviatile_contig1.471.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.471.1
Unique NamemRNA_P-fluviatile_contig1.471.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.471.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 8.390e-19
Identity = 54/156 (34.62%), Postives = 68/156 (43.59%), Query Frame = 2 
Query:  419 SSGQLAIGYCGLYRRWDDIPDEEMAPLEARCVD----------------------------DDP--------------------------------CAGTCGEFQECAKYDKNGKYYCSDTCDGNP-CGDGTRCRTRPKRWCRKTDFGGCPRKRRC 703
            ++GQL +G C L R W D+PD+E A LEA C +                            DDP                                C G C + QEC +Y +NGKYYCSDTCD    C +G  C TRP++WCR + + GCP KRRC
Sbjct:  130 TAGQLTVGLCDLARVWSDVPDDEKADLEAGCGECDVSCGEFQECLLYEDGLESEYYCADTCDDPDRCADNETCVLTEVACIRAPCPPVASCEATENCDGACDDTQECLQYARNGKYYCSDTCDSPAACEEGEECSTRPRKWCRSSGYDGCPEKRRC 285
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCN7_ECTSI8.390e-1934.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5218428..5223573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue2e-35
Seed eggNOG ortholog2880.D8LCN7
EggNOG OGs2D2W6@1,2SP8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionTissue inhibitor of metalloproteinases-like, OB-fold
Ec32 orthologEc-03_002200.1
Exons3
Model size1517
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.471.1prot_P-fluviatile_contig1.471.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5219230..5223521 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815340.4396737-UTR-P-fluviatile_contig1:5218427..52192291622815340.4396737-UTR-P-fluviatile_contig1:5218427..5219229Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5218428..5219229 -
1693561553.3016875-UTR-P-fluviatile_contig1:5218427..52192291693561553.3016875-UTR-P-fluviatile_contig1:5218427..5219229Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5218428..5219229 -
1622815340.4982796-UTR-P-fluviatile_contig1:5223521..52235731622815340.4982796-UTR-P-fluviatile_contig1:5223521..5223573Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5223522..5223573 -
1693561553.3465054-UTR-P-fluviatile_contig1:5223521..52235731693561553.3465054-UTR-P-fluviatile_contig1:5223521..5223573Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5223522..5223573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815340.4519184-CDS-P-fluviatile_contig1:5219229..52193911622815340.4519184-CDS-P-fluviatile_contig1:5219229..5219391Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5219230..5219391 -
1693561553.3130338-CDS-P-fluviatile_contig1:5219229..52193911693561553.3130338-CDS-P-fluviatile_contig1:5219229..5219391Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5219230..5219391 -
1622815340.4659028-CDS-P-fluviatile_contig1:5219865..52201931622815340.4659028-CDS-P-fluviatile_contig1:5219865..5220193Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5219866..5220193 -
1693561553.323675-CDS-P-fluviatile_contig1:5219865..52201931693561553.323675-CDS-P-fluviatile_contig1:5219865..5220193Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5219866..5220193 -
1622815340.4809504-CDS-P-fluviatile_contig1:5223348..52235211622815340.4809504-CDS-P-fluviatile_contig1:5223348..5223521Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5223349..5223521 -
1693561553.3307362-CDS-P-fluviatile_contig1:5223348..52235211693561553.3307362-CDS-P-fluviatile_contig1:5223348..5223521Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5223349..5223521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.471.1

>prot_P-fluviatile_contig1.471.1 ID=prot_P-fluviatile_contig1.471.1|Name=mRNA_P-fluviatile_contig1.471.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=221bp
MVTPRILSAAATLTFLLTSTPQQTNACSCLDVSYTPCDFVQGIAPPKATD
VVRATALRSSPAPTDISDDFAFVEVVYTVKVVEVFKGDASCGQEISFVTD
DPALCGIMLQIGVEYALALSPSSSGQLAIGYCGLYRRWDDIPDEEMAPLE
ARCVDDDPCAGTCGEFQECAKYDKNGKYYCSDTCDGNPCGDGTRCRTRPK
RWCRKTDFGGCPRKRRCLAH*
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mRNA from alignment at P-fluviatile_contig1:5218428..5223573-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.471.1 ID=mRNA_P-fluviatile_contig1.471.1|Name=mRNA_P-fluviatile_contig1.471.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5146bp|location=Sequence derived from alignment at P-fluviatile_contig1:5218428..5223573- (Porterinema fluviatile SAG_2381)
AAATAAGAGCGCCGTTGCCGATAGAGACGAAGAGACAATTTGATAGAAGA
GCATGGTGACTCCGAGGATTCTGTCCGCTGCGGCAACTCTGACCTTCCTG
CTGACGAGCACTCCACAGCAGACGAATGCATGCTCGTGCCTTGACGTTTC
CTACACGCCATGCGATTTCGTGCAGGGCATCGCCCCACCCAAGGCAACCG
ACGTTGTTAGAGCTACAGCTCTCAGGTATGAAATGTTGTCTGAGTCGCCC
AAGGCAGTAGACGTGAGCATATGCGATCCTTGGCGAGTCTCGTTGAATTA
CTTTGTGATGAGATGTTGTGCTGGAAAGGCACTGCTGTGCCGAACGGGTG
CGTAGATCCGTGTGGCGTGGGGCGTAGGGGGGGGTGAATCTGCGTATCTT
TTGCACCGTGCTTCTTCCAAGCATTGAATGTTATCAGACCCTGCGATGCG
TTTGCTCCCTGGATAGAAAAATGGTTCAAGTCCACGGCATTTTCGCAGAA
GCCTTGCTGCCGTGACTGATGCAGCCTGACCCGGTAGAGTTGCAAGGGGC
TACTATTTCCGTTGGATCGTCCAGGGGTGTTTATGTACTCGACCGGCTGC
AAACCACGGTTCTCGGTGTGGAATACCATTTAACGGGGAACCGTGATTCC
TGTCCCCTGGTGTCATTCCTCTTTGTAAGTTAGTTGACGCTTTCTTCCAA
GGCCAACTTGCAGGAACAATTTTCCCACAGATGCCGCTGAAACGGTATGC
GCCTCGAAAGTTTTTCAAGGCTGAAGCTCTCGTATTAGCTACATGCAAGC
GCACCATCATGCTCGTTGTCTATCCACAAGATTCTCCGGTCAAGCGAGCG
TCATCCGCGAAGAAGGCGCAGAACCCGTTTTTAAATTTGCGGGAGACACG
CAAGGAATCCGTCCGATTCGGATCGGCCTCCTGCCGTTCGACCATCCAAA
AACTCTCCCCTCGTGCTACACAACGCCTCGCCAGAATTCAGCTCTCCGTT
CCTTGCGAACGGCCTCACACAACCCCAGGGCCAGCAATAGACAGCATATT
TCCCCGAAAGATTTTCTCTCAGCCCTGCAACTCTTGGATCGGCCCCCCGT
TGTGAAAAACAATCCACAGACGAGAGCGTGCTCGTCCCTCCAAACGGGCT
GCACGCCTTGTTACTACGTGCCGGGAGGTGCCCCGCCCAACGAAAATGGC
GTTGTAAGGGTCTCCGCTCTGACAAGGTACGATAACCTGTGCGCCGCGCG
GATAAAGCGAGCCCGCACAAGTCTGTCTTGCTTTCGCCAAGACGTTCATT
GAGAAGACGCTTCCAGGTCTCAAGGATAGGTGTGCTTCGCGCTCTGCCTC
CACAGTCGTGATTGTGGTAGAAATCGAAGTACTTGGTCGCTGAAGGCATA
ATTCGCGATGAAGAACTCTTGCTCGGCATCTCCCATCTGACTCGCTTTAC
ATTGGGGAAGGGGAGGACGGAGTTTCCTGTAAAAAAATGATTATGTCCCT
CCGGTCGCAGATTTTGCCTTTCTGACACGGCGGAGACCCGGTGGAACACT
GGATGTGCCACTCCAAATACCCTAGATTTGTTCCGACACGTTCGTCATAT
TTTGTTCACGCAAGCATGTTCAAGACCCGGACAATATTATATATCCTCGC
ACTACAAGGCGGGTGGTCGGTACAACATGGCAATCTCACTTCAACTCTCG
TGCGGACGCACACACACTCAATTGATACGAAATCGCACGCTCCCCAGGTT
CGTTTAGTGTCACACCAAAAACGCAAGGGCATAGTCATCTCTTGCGACGG
TGCCGAGAGGGGGGGTTCGGTTGCCGTCATGGCTGTATGAGCGATGTGAG
CGATGATGACCACCAGGTTTCGCTTGCAGCGAGGAGTAGTTAGATTACAT
GCGGGGCGAGCGGCGGACAGGCTTGCAAGTTGCGAGTATGAGCTCAAACG
CCACACGTCTCTGTCCCGACACCGCAGGATGAAAAGTGTCTGGATTGCCT
GAATCCGAAGCGTTGTTCGGCCTCTACGATACTTTCGGGACCCCCTGCCA
AGCGGGTGAAAGCCAACTCCGCACCCCCGAAGCGTACTACCATCCCCGCC
AACCCTCTCTAGCCGTGCCTGAGCACCACCTACGAATTCGACCTCCTCAA
AGTTTACCCCAAAGCAAACAGAGGTTCCTTAGCACCTTGCGATCATAAAC
ACACTAATCTAATCATTCCAACAGATTTCGTGTTCAATTCTGCCGACCAA
AGGGCAGAGCCCCCGATGTGTTTGCATCGGCAGTTCGTCCCAATTTCTCA
GACGAAAACAAAATGGCTTGCGGTTGGCCTGTCCACCATCCTCCCTAGTA
TAATGAAGCTGCCTAGAGATATCAGATTATGCAACGCGTTTTGGCCACCT
GGCCATGAAGCCGTATTTTCTTCGAAACTAAGTTCCAAACACACCATGAT
GGATCGAACGCCCGTGAGTTGAGGAATCAAAAAAGGTGTCAAATCTTGTT
TGACGAAATACCCCGCCGCAGGAGCTCGACCCGTTGCCGAAGTGATTAGT
AATTGGTTAAGATGACCTTTCAGATCGTTTTCTTCTCTTTTGTTGCGAAT
CAACGACTTCTGTGTTCAAACGGAATGCGCGACATCACTTCCTATCTTCG
GCTCATTGCAAAATTTTCGCTCCCCCTTCGCCTCTCAGAGCGATCCAATT
CTTACCAGCCGATCCTCACGCCGGACCAAAGCTGCGCGTTCCGTGGTCAA
AGTCTGACTTGAAAAGCTAAGGAAGCTGATAGAGAGAGCCATTTTGATTT
TCGGACGCGACTGCTCGTGTACCGATGAATGGCAGGTGCAATGAACTCGA
CCCCTCCATCCGCATCGAGCATTTCGCTGTGGGGCGAAATGTTGGTCTCA
CGTTGTCGTTGCGGCATACGTGTTCCACAGAGTCGCGAGTGACCCTTGAT
GCAAGAGAGGAAAGAACAGCAGAATGGAAAGCGCAGCGCTACATTGGACA
CGGGAGTCGACGAGTTTCGATCCCTACTCTAATTCTGGGACGCATTTGGT
CTGAAAACTGTCAAGTAGCTAGAGCGACTCGAAGTGGCAAGCGAAGAGGG
TTAACCAAGATTGGTAGCGCAGGAGGCCCCCGAGACACGTCATATTGTGT
CGAATTCGTGGTAAATGGGACACAATGAGAGATCAGTACAGACCAACAGA
TACCTCTAGGGAGTAGCTGAAGGGGGCCACGCACAAAATGACAGAAACTT
TGATTCGGCTTTCCACAAGGGCACCACTCAACGAGCATGTGTCCCCGCAC
CGGTCCTCTCTCCCGCGAAACGCCGCGCTTTCTATCCCTTGTTGTTGCTT
GATTGTGAATCCCCCTCGACCACACCACAGGTCGTCCCCGGCGCCGACTG
ACATCAGCGACGACTTCGCCTTCGTGGAGGTCGTCTACACGGTCAAGGTT
GTCGAGGTCTTCAAGGGAGACGCAAGCTGCGGGCAGGAGATCAGCTTCGT
CACGGACGACCCCGCCCTGTGCGGGATCATGCTGCAGATCGGAGTGGAGT
ACGCCCTCGCCCTGTCCCCGAGCAGCAGCGGCCAGCTCGCCATAGGCTAC
TGTGGCCTGTACAGGCGGTGGGACGATATACCAGACGAGGAAATGGCGCC
CCTCGAAGCTCGCTGCGTGGATGATGACCCGTGCGCTGGCACGTGTGGCG
AGTTCCAGGTGAACAACGTCAAGGCTTATTGAGGTGTAGCGGCGGAGAAC
AGGAGGCTTGTGGAGGATTGCTTTGCACGTAAGATGAAGACCGCTTGTGT
GGATCTGACCTGGGCACTTACGTAGGAAAAGCCGTCGACTAGTTTTTTGG
TTGAGCCGAGTCGGGCGAGTTTCGTATGAACGGAGGGCCCCCTCTGTAAG
AAGGCGAATAGTTGGTGTTGCGCGAATACTCGCCGATGGGAGTCTTTCGC
CTAAGCACTATGGACTGTCCTGGTCCTGCATTAGTATAGCACGGCGCCTC
TCGTGGGGACTTCGTGGGAATGGGAAGCGCGCCGCTGTGGCGTCTCTCAT
CAAAGGCTTGATGTTGCGGAACCAAGGTGTCAAACACAGACGAGACCGGC
CTGGTGATTAGACGTCCCCGCCACTTCGTTCCAAATCCTCTTCGCCCTTA
CCCTTGCACCCTCGTGACTTGTTTCTGGGCAGGAATGCGCGAAATACGAC
AAGAATGGGAAATACTACTGTTCGGACACCTGTGACGGAAACCCTTGCGG
TGATGGAACCCGTTGCCGCACCCGACCCAAAAGGTGGTGCCGTAAGACGG
ACTTTGGAGGCTGTCCGAGGAAGCGCAGATGTCTCGCCCACTAGAGTTTC
GCCAACGTCCTCGCCCGCAATTGGCGATCGCTGCTGTGCTACCCAAACGT
GCACACGTACACGTGAACAAGGAACCCTCGATTACTATGAGACAAACCGT
TGCGGCATGATAGAACCGCCGCATCCCGGCTGTTCCTAGGTCTCATTTTT
CAACAAGAACCTGCGACGTTTCACAGTGTCGCAGGAGAGGGCTGAGCCCT
GCGCACGAAGGTAGACCACTCGTATGTGACAGACTTTTGCGTTGGTATCA
GCCCTCCGTTGCAGCTACTTGAATTAATGGACGCAAACGGCGGGAAAAAA
AATGGGAAGCCAGGTCGAGGTGCCGACACATTCCGAATAAATGAAGCGGC
CACACGACTTGTACCTTTTTGAACAGAGGATGCCGTCGTCACAAGTCAAC
GACTTTACAGGCTGAATGACAAGTCCCTAAGAGAATTGACGTCAAGGACT
AGCAATGCAGTTACTTTCGCGCTTGCGCATCTGTACGGGATATCCTAAGA
GGTGAACAGAGTAAAGGCTCGTCCCCAAAACTGATTAAAGCGGCCGAAGA
ATACCAGAGACGTAAAGAAGGACCGAAGAGTGTCTGCGGTTTGCGGGGTC
ATTTGCTGCAGTAGTGCAGGCTAAGTTCGTAGGTGAAATGGCTAACAAGT
TTTCTGATTTGCGGCGACCATTGTTTTCCCGCGGCTCGTAAAGAAGGACC
GAAGAGTGTCTGCGGTTTGCGGGGTCATTTGCTGAAGTAGTGCAGGCTAA
GTTCGTAGGTCAATTCGCTACAACAAGTTTTCTGATTTGCGGCGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:5218428..5223573-

>mRNA_P-fluviatile_contig1.471.1 ID=mRNA_P-fluviatile_contig1.471.1|Name=mRNA_P-fluviatile_contig1.471.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1326bp|location=Sequence derived from alignment at P-fluviatile_contig1:5218428..5223573- (Porterinema fluviatile SAG_2381)
ATGGTGACTCCGAGGATTCTGTCCGCTGCGGCAACTCTGACCTTCCTGCT
GACGAGCACTCCACAGCAGACGAATGCATGCTCGTGCCTTGACGTTTCCT
ACACGCCATGCGATTTCGTGCAGGGCATCGCCCCACCCAAGGCAACCGAC
GTTGTTAGAGCTACAGCTCTCAGATGGTGACTCCGAGGATTCTGTCCGCT
GCGGCAACTCTGACCTTCCTGCTGACGAGCACTCCACAGCAGACGAATGC
ATGCTCGTGCCTTGACGTTTCCTACACGCCATGCGATTTCGTGCAGGGCA
TCGCCCCACCCAAGGCAACCGACGTTGTTAGAGCTACAGCTCTCAGGTCG
TCCCCGGCGCCGACTGACATCAGCGACGACTTCGCCTTCGTGGAGGTCGT
CTACACGGTCAAGGTTGTCGAGGTCTTCAAGGGAGACGCAAGCTGCGGGC
AGGAGATCAGCTTCGTCACGGACGACCCCGCCCTGTGCGGGATCATGCTG
CAGATCGGAGTGGAGTACGCCCTCGCCCTGTCCCCGAGCAGCAGCGGCCA
GCTCGCCATAGGCTACTGTGGCCTGTACAGGCGGTGGGACGATATACCAG
ACGAGGAAATGGCGCCCCTCGAAGCTCGCTGCGTGGATGATGACCCGTGC
GCTGGCACGTGTGGCGAGTTCCAGGTCGTCCCCGGCGCCGACTGACATCA
GCGACGACTTCGCCTTCGTGGAGGTCGTCTACACGGTCAAGGTTGTCGAG
GTCTTCAAGGGAGACGCAAGCTGCGGGCAGGAGATCAGCTTCGTCACGGA
CGACCCCGCCCTGTGCGGGATCATGCTGCAGATCGGAGTGGAGTACGCCC
TCGCCCTGTCCCCGAGCAGCAGCGGCCAGCTCGCCATAGGCTACTGTGGC
CTGTACAGGCGGTGGGACGATATACCAGACGAGGAAATGGCGCCCCTCGA
AGCTCGCTGCGTGGATGATGACCCGTGCGCTGGCACGTGTGGCGAGTTCC
AGGAATGCGCGAAATACGACAAGAATGGGAAATACTACTGTTCGGACACC
TGTGACGGAAACCCTTGCGGTGATGGAACCCGTTGCCGCACCCGACCCAA
AAGGTGGTGCCGTAAGACGGACTTTGGAGGCTGTCCGAGGAAGCGCAGAT
GTCTCGCCCACTAGGAATGCGCGAAATACGACAAGAATGGGAAATACTAC
TGTTCGGACACCTGTGACGGAAACCCTTGCGGTGATGGAACCCGTTGCCG
CACCCGACCCAAAAGGTGGTGCCGTAAGACGGACTTTGGAGGCTGTCCGA
GGAAGCGCAGATGTCTCGCCCACTAG
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