prot_P-fluviatile_contig89.14975.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig89.14975.1
Unique Nameprot_P-fluviatile_contig89.14975.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length119
Homology
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BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: W6M9Y9_ACEAT (Chloroplast 50S ribosomal protein L12 (Fragment) n=1 Tax=Acetabularia acetabulum TaxID=35845 RepID=W6M9Y9_ACEAT)

HSP 1 Score: 55.1 bits (131), Expect = 7.450e-7
Identity = 46/98 (46.94%), Postives = 55/98 (56.12%), Query Frame = 0 
Query:    8 FGVFSTTSLASFNPNSVTDLTIFRIDIFLSFGTSSKLTSNSVFSSSLPLSS----EAATAPVLIIIXXXXAEASTSKVSSIALTNSAASNNVNVFNSS 101
            FG     SL S  P +V    IF++   LS GTSS +TS  VFSS +  +S    +   A  + I     A+AST KVSSI  TNSAASNNV VFN S
Sbjct:   50 FGNEEVNSLTSCKPKAVNFRKIFKVATRLSPGTSSTITSKVVFSSWVGSTSCDSKDEGPAVAITIAPPVDADASTPKVSSICETNSAASNNVKVFNFS 147
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BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: Q2JTQ1_SYNJA (Uncharacterized protein n=1 Tax=Synechococcus sp. (strain JA-3-3Ab) TaxID=321327 RepID=Q2JTQ1_SYNJA)

HSP 1 Score: 50.8 bits (120), Expect = 6.590e-5
Identity = 46/110 (41.82%), Postives = 53/110 (48.18%), Query Frame = 0 
Query:    3 PCLITFGVFSTTSLASFNPNSVTDLTIFRIDIFLSFGTSSKLTSNSVFSSS-----------LPLSSEAATAPVLIIIXXXXAEASTSKVSSIALTNSAASNNVNVFNSS 101
            P L   G  ST SLASF P  V   T  R  IFLS GT+S++TS +V SS+                 A T P     X       T K SS+A TNS ASN +N FNSS
Sbjct:  241 PSLTGLGAASTRSLASFRPKPVNSRTTLRTAIFLSAGTASRMTSKAVCSSTGSGAXXXXXXXXXXXXXAMTMPPAXXXXL------TPKASSMAFTNSEASNKLNAFNSS 344
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
W6M9Y9_ACEAT7.450e-746.94Chloroplast 50S ribosomal protein L12 (Fragment) n... [more]
Q2JTQ1_SYNJA6.590e-541.82Uncharacterized protein n=1 Tax=Synechococcus sp. ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..118
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:65845..66201 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14975.1mRNA_P-fluviatile_contig89.14975.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig89 65845..66201 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig89.14975.1 ID=prot_P-fluviatile_contig89.14975.1|Name=mRNA_P-fluviatile_contig89.14975.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=119bp
VSPCLITFGVFSTTSLASFNPNSVTDLTIFRIDIFLSFGTSSKLTSNSVF
SSSLPLSSEAATAPVLIIIMPPPAEASTSKVSSIALTNSAASNNVNVFNS
SIRVEIFSVIYIYFFFTF*
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