mRNA_P-fluviatile_contig89.14975.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14975.1
Unique NamemRNA_P-fluviatile_contig89.14975.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A1I9LVX1_9PHAE (50S ribosomal protein L12, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX1_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.990e-43
Identity = 84/109 (77.06%), Postives = 89/109 (81.65%), Query Frame = -2
Query:    3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSDEEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
            MT+KISTLI+ELKTLTLLEAAELVKAIEETFDVDAS                    SDEEKTEFDVSLDEVPKDKKISILKI+RS+TELGLKEAKEVVENTPKVIK+GL
Sbjct:    1 MTKKISTLIDELKTLTLLEAAELVKAIEETFDVDASPAGGGVMMMNAGATISEDNVSDEEKTEFDVSLDEVPKDKKISILKIIRSITELGLKEAKEVVENTPKVIKEGL 109          
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A8F0FB01_9PHAE (Ribosomal protein L12 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB01_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 7.820e-43
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = -2
Query:    3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSDEEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
            MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAG XXXXXXXXXXXXXXXXX+ EEKTEFDVSLDEVPKDKKISILK+VRSVTELGLKEAKEVVENTPKVIK GL
Sbjct:    1 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGGXXXXXXXXXXXXXXXXXA-EEKTEFDVSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVIKAGL 108          
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: D1J716_ECTSI (50S ribosomal protein L12, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=D1J716_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.170e-42
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = -2
Query:    3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSDEEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
            MTEKISTLI+ELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXX   S EEKTEFDVSLDEVPKDKKISILKIVRS+TELGLKEAKEVVENTPKVI++GL
Sbjct:    1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXNA-SGEEKTEFDVSLDEVPKDKKISILKIVRSLTELGLKEAKEVVENTPKVIQEGL 108          
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A6B7EZL5_9PHAE (50S ribosomal protein L12 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EZL5_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 3.270e-42
Identity = 101/109 (92.66%), Postives = 107/109 (98.17%), Query Frame = -2
Query:    3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSDEEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
            MTEKISTLI+ELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXX  EEKTEF+VSLDEVPKDKKISILK+VR+VTELGLKEAKEVVENTPKVI++GL
Sbjct:    1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXXGEEKTEFNVSLDEVPKDKKISILKVVRAVTELGLKEAKEVVENTPKVIQEGL 109          
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A6G6D787_ECTSI (50S ribosomal protein L12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A6G6D787_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 9.080e-42
Identity = 100/109 (91.74%), Postives = 105/109 (96.33%), Query Frame = -2
Query:    3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSDEEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
            MTEKISTLI+ELKTLTLLEAAELVKAIEETFDVDAS+GXXXXXXXXXXXXXXX   S EEKTEFDVSLDEVPKDKKISILKIVRS+TELGLKEAKEVVENTPKVI++GL
Sbjct:    1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASSGXXXXXXXXXXXXXXXNA-SGEEKTEFDVSLDEVPKDKKISILKIVRSLTELGLKEAKEVVENTPKVIQEGL 108          
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A5B9RE57_9PHAE (50S ribosomal protein L12, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A5B9RE57_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.290e-41
Identity = 99/109 (90.83%), Postives = 104/109 (95.41%), Query Frame = -2
Query:    3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSDEEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
            MTEKISTLI+ELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXX   + EEKTEFDVSLDEVPKDKKI ILK+VRSVTELGLKEAKE+VENTPKVIK+GL
Sbjct:    1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXGEAA-EEKTEFDVSLDEVPKDKKIPILKVVRSVTELGLKEAKELVENTPKVIKEGL 108          
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: D1GJP6_FUCVE (50S ribosomal protein L12, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJP6_FUCVE)

HSP 1 Score: 139 bits (349), Expect = 4.540e-40
Identity = 82/110 (74.55%), Postives = 88/110 (80.00%), Query Frame = -2
Query:    3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSD-EEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
            MTEKISTLIEELKTLTLLEAAELVK+IEETFDVDA  G                  +  EEKTEFDVSL+EVPKDKKI+ILK+VRSVTELGLKEAKEVVENTPKVIK+GL
Sbjct:    1 MTEKISTLIEELKTLTLLEAAELVKSIEETFDVDAPTGGASGVMMMNPGAISTEDNNTVEEKTEFDVSLEEVPKDKKIAILKVVRSVTELGLKEAKEVVENTPKVIKEGL 110          
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A8F0F840_9PHAE (Ribosomal protein L12 n=1 Tax=Postelsia palmaeformis TaxID=105414 RepID=A0A8F0F840_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.730e-39
Identity = 81/109 (74.31%), Postives = 87/109 (79.82%), Query Frame = -2
Query:    3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSDEEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
            MTEKISTLI+ LKTLTLLEAAELVKAIEETFDVDAS G                  + EEKTEFD+SLDEVPKDKKI ILKIVRS+TELGLKEAKE+VENTPKVIK+GL
Sbjct:    1 MTEKISTLIDGLKTLTLLEAAELVKAIEETFDVDASTGGGVMMMSQGGSVSDNGETA-EEKTEFDISLDEVPKDKKIPILKIVRSLTELGLKEAKELVENTPKVIKEGL 108          
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A8F0JYI3_9PHAE (Ribosomal protein L12 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYI3_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.090e-38
Identity = 92/111 (82.88%), Postives = 103/111 (92.79%), Query Frame = -2
Query:    3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSD--EEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
            MTEKI TLI+ELKTLTLLEAA+LVKAIEETF+VDAS G    XXXXXXXXXXXXXXS+  EEKTEFD+SLDEVPKDKKISILK+VR+VTELGLKEAKEVVENTP+++K+GL
Sbjct:    1 MTEKILTLIDELKTLTLLEAADLVKAIEETFNVDASTGSGVMXXXXXXXXXXXXXXSEVVEEKTEFDLSLDEVPKDKKISILKVVRTVTELGLKEAKEVVENTPRILKEGL 111          
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A141BSK5_9PHAE (50S ribosomal protein L12, chloroplastic n=15 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSK5_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.130e-38
Identity = 97/111 (87.39%), Postives = 105/111 (94.59%), Query Frame = -2
Query:    3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSD--EEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
            MTEKI TLIEELKTLTLLEA ELV++IEETF+VDAS GXXXXXXXXXXXXXXXXXX+   EEKTEFD+SLDEVPKDKKI+ILK+VRSVTELGLKEAKEVVENTPKVIK+GL
Sbjct:    1 MTEKILTLIEELKTLTLLEATELVQSIEETFNVDASTGXXXXXXXXXXXXXXXXXXNKAIEEKTEFDISLDEVPKDKKIAILKVVRSVTELGLKEAKEVVENTPKVIKEGL 111          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I9LVX1_9PHAE1.990e-4377.0650S ribosomal protein L12, chloroplastic n=1 Tax=P... [more]
A0A8F0FB01_9PHAE7.820e-4395.41Ribosomal protein L12 n=1 Tax=Desmarestia aculeata... [more]
D1J716_ECTSI3.170e-4292.6650S ribosomal protein L12, chloroplastic n=6 Tax=P... [more]
A0A6B7EZL5_9PHAE3.270e-4292.6650S ribosomal protein L12 n=1 Tax=Cladosiphon okam... [more]
A0A6G6D787_ECTSI9.080e-4291.7450S ribosomal protein L12 n=1 Tax=Ectocarpus silic... [more]
A0A5B9RE57_9PHAE1.290e-4190.8350S ribosomal protein L12, chloroplastic n=28 Tax=... [more]
D1GJP6_FUCVE4.540e-4074.5550S ribosomal protein L12, chloroplastic n=3 Tax=F... [more]
A0A8F0F840_9PHAE1.730e-3974.31Ribosomal protein L12 n=1 Tax=Postelsia palmaeform... [more]
A0A8F0JYI3_9PHAE1.090e-3882.88Ribosomal protein L12 n=1 Tax=Protohalopteris sp. ... [more]
A0A141BSK5_9PHAE3.130e-3887.3950S ribosomal protein L12, chloroplastic n=15 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:65845..66201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817298.7110262-CDS-P-fluviatile_contig89:65844..662011622817298.7110262-CDS-P-fluviatile_contig89:65844..66201Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 65845..66201 +
1693571980.3978755-CDS-P-fluviatile_contig89:65844..662011693571980.3978755-CDS-P-fluviatile_contig89:65844..66201Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 65845..66201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14975.1prot_P-fluviatile_contig89.14975.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 65845..66201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14975.1

>prot_P-fluviatile_contig89.14975.1 ID=prot_P-fluviatile_contig89.14975.1|Name=mRNA_P-fluviatile_contig89.14975.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=119bp
VSPCLITFGVFSTTSLASFNPNSVTDLTIFRIDIFLSFGTSSKLTSNSVF
SSSLPLSSEAATAPVLIIIMPPPAEASTSKVSSIALTNSAASNNVNVFNS
SIRVEIFSVIYIYFFFTF*
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mRNA from alignment at P-fluviatile_contig89:65845..66201+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14975.1 ID=mRNA_P-fluviatile_contig89.14975.1|Name=mRNA_P-fluviatile_contig89.14975.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=357bp|location=Sequence derived from alignment at P-fluviatile_contig89:65845..66201+ (Porterinema fluviatile SAG_2381)
GTTAGTCCTTGTTTGATAACTTTTGGTGTATTTTCAACTACTTCTTTAGC TTCTTTTAATCCTAACTCTGTTACGGACCTTACTATTTTTAGGATAGATA TTTTTTTATCTTTCGGAACTTCATCTAAACTAACATCAAACTCTGTTTTC TCTTCATCACTTCCGCTATCGTCAGAGGCTGCAACCGCTCCTGTACTCAT CATCATCATGCCTCCACCAGCAGAAGCATCAACATCAAAAGTTTCTTCTA TAGCCTTAACCAATTCAGCAGCTTCTAATAATGTTAATGTTTTTAATTCT TCAATTAGAGTCGAAATTTTTTCAGTCATATATATATATTTTTTTTTTAC TTTTTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:65845..66201+

>mRNA_P-fluviatile_contig89.14975.1 ID=mRNA_P-fluviatile_contig89.14975.1|Name=mRNA_P-fluviatile_contig89.14975.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=714bp|location=Sequence derived from alignment at P-fluviatile_contig89:65845..66201+ (Porterinema fluviatile SAG_2381)
GTTAGTCCTTGTTTGATAACTTTTGGTGTATTTTCAACTACTTCTTTAGC
TTCTTTTAATCCTAACTCTGTTACGGACCTTACTATTTTTAGGATAGATA
TTTTTTTATCTTTCGGAACTTCATCTAAACTAACATCAAACTCTGTTTTC
TCTTCATCACTTCCGCTATCGTCAGAGGCTGCAACCGCTCCTGTACTCAT
CATCATCATGCCTCCACCAGCAGAAGCATCAACATCAAAAGTTTCTTCTA
TAGCCTTAACCAATTCAGCAGCTTCTAATAATGTTAATGTTTTTAATTCT
TCAATTAGAGTCGAAATTTTTTCAGTCATATATATATATTTTTTTTTTAC
TTTTTAAGTTAGTCCTTGTTTGATAACTTTTGGTGTATTTTCAACTACTT
CTTTAGCTTCTTTTAATCCTAACTCTGTTACGGACCTTACTATTTTTAGG
ATAGATATTTTTTTATCTTTCGGAACTTCATCTAAACTAACATCAAACTC
TGTTTTCTCTTCATCACTTCCGCTATCGTCAGAGGCTGCAACCGCTCCTG
TACTCATCATCATCATGCCTCCACCAGCAGAAGCATCAACATCAAAAGTT
TCTTCTATAGCCTTAACCAATTCAGCAGCTTCTAATAATGTTAATGTTTT
TAATTCTTCAATTAGAGTCGAAATTTTTTCAGTCATATATATATATTTTT
TTTTTACTTTTTAA
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