mRNA_P-fluviatile_contig89.14975.1 (mRNA) Porterinema fluviatile SAG_2381
|
Overview
Homology
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A1I9LVX1_9PHAE (50S ribosomal protein L12, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX1_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.990e-43 Identity = 84/109 (77.06%), Postives = 89/109 (81.65%), Query Frame = -2
Query: 3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSDEEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
MT+KISTLI+ELKTLTLLEAAELVKAIEETFDVDAS SDEEKTEFDVSLDEVPKDKKISILKI+RS+TELGLKEAKEVVENTPKVIK+GL
Sbjct: 1 MTKKISTLIDELKTLTLLEAAELVKAIEETFDVDASPAGGGVMMMNAGATISEDNVSDEEKTEFDVSLDEVPKDKKISILKIIRSITELGLKEAKEVVENTPKVIKEGL 109
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A8F0FB01_9PHAE (Ribosomal protein L12 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB01_9PHAE) HSP 1 Score: 145 bits (367), Expect = 7.820e-43 Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = -2
Query: 3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSDEEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAG XXXXXXXXXXXXXXXXX+ EEKTEFDVSLDEVPKDKKISILK+VRSVTELGLKEAKEVVENTPKVIK GL
Sbjct: 1 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGGXXXXXXXXXXXXXXXXXA-EEKTEFDVSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVIKAGL 108
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: D1J716_ECTSI (50S ribosomal protein L12, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=D1J716_ECTSI) HSP 1 Score: 144 bits (363), Expect = 3.170e-42 Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = -2
Query: 3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSDEEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
MTEKISTLI+ELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXX S EEKTEFDVSLDEVPKDKKISILKIVRS+TELGLKEAKEVVENTPKVI++GL
Sbjct: 1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXNA-SGEEKTEFDVSLDEVPKDKKISILKIVRSLTELGLKEAKEVVENTPKVIQEGL 108
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A6B7EZL5_9PHAE (50S ribosomal protein L12 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EZL5_9PHAE) HSP 1 Score: 144 bits (363), Expect = 3.270e-42 Identity = 101/109 (92.66%), Postives = 107/109 (98.17%), Query Frame = -2
Query: 3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSDEEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
MTEKISTLI+ELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXX EEKTEF+VSLDEVPKDKKISILK+VR+VTELGLKEAKEVVENTPKVI++GL
Sbjct: 1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXXGEEKTEFNVSLDEVPKDKKISILKVVRAVTELGLKEAKEVVENTPKVIQEGL 109
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A6G6D787_ECTSI (50S ribosomal protein L12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A6G6D787_ECTSI) HSP 1 Score: 143 bits (360), Expect = 9.080e-42 Identity = 100/109 (91.74%), Postives = 105/109 (96.33%), Query Frame = -2
Query: 3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSDEEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
MTEKISTLI+ELKTLTLLEAAELVKAIEETFDVDAS+GXXXXXXXXXXXXXXX S EEKTEFDVSLDEVPKDKKISILKIVRS+TELGLKEAKEVVENTPKVI++GL
Sbjct: 1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASSGXXXXXXXXXXXXXXXNA-SGEEKTEFDVSLDEVPKDKKISILKIVRSLTELGLKEAKEVVENTPKVIQEGL 108
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A5B9RE57_9PHAE (50S ribosomal protein L12, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A5B9RE57_9PHAE) HSP 1 Score: 142 bits (359), Expect = 1.290e-41 Identity = 99/109 (90.83%), Postives = 104/109 (95.41%), Query Frame = -2
Query: 3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSDEEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
MTEKISTLI+ELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXX + EEKTEFDVSLDEVPKDKKI ILK+VRSVTELGLKEAKE+VENTPKVIK+GL
Sbjct: 1 MTEKISTLIDELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXGEAA-EEKTEFDVSLDEVPKDKKIPILKVVRSVTELGLKEAKELVENTPKVIKEGL 108
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: D1GJP6_FUCVE (50S ribosomal protein L12, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJP6_FUCVE) HSP 1 Score: 139 bits (349), Expect = 4.540e-40 Identity = 82/110 (74.55%), Postives = 88/110 (80.00%), Query Frame = -2
Query: 3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSD-EEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
MTEKISTLIEELKTLTLLEAAELVK+IEETFDVDA G + EEKTEFDVSL+EVPKDKKI+ILK+VRSVTELGLKEAKEVVENTPKVIK+GL
Sbjct: 1 MTEKISTLIEELKTLTLLEAAELVKSIEETFDVDAPTGGASGVMMMNPGAISTEDNNTVEEKTEFDVSLEEVPKDKKIAILKVVRSVTELGLKEAKEVVENTPKVIKEGL 110
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A8F0F840_9PHAE (Ribosomal protein L12 n=1 Tax=Postelsia palmaeformis TaxID=105414 RepID=A0A8F0F840_9PHAE) HSP 1 Score: 137 bits (345), Expect = 1.730e-39 Identity = 81/109 (74.31%), Postives = 87/109 (79.82%), Query Frame = -2
Query: 3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSDEEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
MTEKISTLI+ LKTLTLLEAAELVKAIEETFDVDAS G + EEKTEFD+SLDEVPKDKKI ILKIVRS+TELGLKEAKE+VENTPKVIK+GL
Sbjct: 1 MTEKISTLIDGLKTLTLLEAAELVKAIEETFDVDASTGGGVMMMSQGGSVSDNGETA-EEKTEFDISLDEVPKDKKIPILKIVRSLTELGLKEAKELVENTPKVIKEGL 108
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A8F0JYI3_9PHAE (Ribosomal protein L12 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYI3_9PHAE) HSP 1 Score: 135 bits (340), Expect = 1.090e-38 Identity = 92/111 (82.88%), Postives = 103/111 (92.79%), Query Frame = -2
Query: 3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSD--EEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
MTEKI TLI+ELKTLTLLEAA+LVKAIEETF+VDAS G XXXXXXXXXXXXXXS+ EEKTEFD+SLDEVPKDKKISILK+VR+VTELGLKEAKEVVENTP+++K+GL
Sbjct: 1 MTEKILTLIDELKTLTLLEAADLVKAIEETFNVDASTGSGVMXXXXXXXXXXXXXXSEVVEEKTEFDLSLDEVPKDKKISILKVVRTVTELGLKEAKEVVENTPRILKEGL 111
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Match: A0A141BSK5_9PHAE (50S ribosomal protein L12, chloroplastic n=15 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSK5_9PHAE) HSP 1 Score: 134 bits (337), Expect = 3.130e-38 Identity = 97/111 (87.39%), Postives = 105/111 (94.59%), Query Frame = -2
Query: 3 MTEKISTLIEELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXSD--EEKTEFDVSLDEVPKDKKISILKIVRSVTELGLKEAKEVVENTPKVIKQGL 329
MTEKI TLIEELKTLTLLEA ELV++IEETF+VDAS GXXXXXXXXXXXXXXXXXX+ EEKTEFD+SLDEVPKDKKI+ILK+VRSVTELGLKEAKEVVENTPKVIK+GL
Sbjct: 1 MTEKILTLIEELKTLTLLEATELVQSIEETFNVDASTGXXXXXXXXXXXXXXXXXXNKAIEEKTEFDISLDEVPKDKKIAILKVVRSVTELGLKEAKEVVENTPKVIKEGL 111 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig89.14975.1 >prot_P-fluviatile_contig89.14975.1 ID=prot_P-fluviatile_contig89.14975.1|Name=mRNA_P-fluviatile_contig89.14975.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=119bp VSPCLITFGVFSTTSLASFNPNSVTDLTIFRIDIFLSFGTSSKLTSNSVFback to top mRNA from alignment at P-fluviatile_contig89:65845..66201+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig89.14975.1 ID=mRNA_P-fluviatile_contig89.14975.1|Name=mRNA_P-fluviatile_contig89.14975.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=357bp|location=Sequence derived from alignment at P-fluviatile_contig89:65845..66201+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig89:65845..66201+ >mRNA_P-fluviatile_contig89.14975.1 ID=mRNA_P-fluviatile_contig89.14975.1|Name=mRNA_P-fluviatile_contig89.14975.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=714bp|location=Sequence derived from alignment at P-fluviatile_contig89:65845..66201+ (Porterinema fluviatile SAG_2381)back to top |