prot_P-fluviatile_contig8.14646.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-fluviatile_contig8.14646.1
Unique Name	prot_P-fluviatile_contig8.14646.1
Type	polypeptide
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length	135

Homology

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BLAST of mRNA_P-fluviatile_contig8.14646.1 vs. uniprot
Match: A0A835ZH45_9STRA (DNA-directed RNA polymerases I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH45_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.690e-47
Identity = 81/131 (61.83%), Postives = 103/131 (78.63%), Query Frame = 0

Query:    8 DGDGGEEYDVFANEDDDPQLEEAAPLEADPTEMDVVDAADAGGAG-----LRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIM 133
            DGD  + YD FA++ D+   EE A       ++++++A + GGA      ++ A +RIT+KYMTKYE+ARILGTRALQISMNAP+MVD+EN TDPLKIA KELRERKIPIKIRRYLPDGS+EDWA+EEL++
Sbjct:    4 DGDHADAYDAFADDGDEDMQEEVADEVGQAGQLELMEADETGGAAPGAPPVKPAQERITSKYMTKYEKARILGTRALQISMNAPIMVDLENMTDPLKIAEKELRERKIPIKIRRYLPDGSYEDWALEELMI 134

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BLAST of mRNA_P-fluviatile_contig8.14646.1 vs. uniprot
Match: A0A1Z5JVB2_FISSO (DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVB2_FISSO)

HSP 1 Score: 148 bits (373), Expect = 2.840e-43
Identity = 86/146 (58.90%), Postives = 103/146 (70.55%), Query Frame = 0

Query:    1 MSDNEYGDGDGG---EEYDVFANEDDDPQLEEAAPLEADPTEMDV---------VDAADAGGAGLRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIMD 134
            MSD+E   G GG    E  VF  EDD P+  E   L++D   +DV         V     GG    +A +RITT+Y+TKYE+AR+LGTRALQISMNAPVMVD++ ETDPLKIA KELRERKIPI IRRY+PDGSHEDWA++ELI+D
Sbjct:    1 MSDDEDPIGSGGGFDNEGGVF--EDDQPEAAEDDELQSDDEGLDVTGEHTSIVGVGEGSEGGGRSVAAAERITTRYLTKYEKARVLGTRALQISMNAPVMVDLDGETDPLKIAEKELRERKIPIIIRRYMPDGSHEDWAVDELIVD 144

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BLAST of mRNA_P-fluviatile_contig8.14646.1 vs. uniprot
Match: A0A7R9ZBL4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBL4_9STRA)

HSP 1 Score: 148 bits (374), Expect = 3.170e-43
Identity = 84/135 (62.22%), Postives = 100/135 (74.07%), Query Frame = 0

Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQLE-EAAPLEADPTEMDVVDAADAGGAGLRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIMD 134
            M  ++ G G G E+ DV    DD+ Q +  AA  E D   +     + A G G   A+ R+TTKY+TKYERAR+LGTRALQISMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW+I+ELI+D
Sbjct:   30 MGADDGGRGGGNEDLDVTGERDDNAQEDMNAANNEGDGELL----GSSAPGGGATGAE-RVTTKYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWSIDELIVD 159

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BLAST of mRNA_P-fluviatile_contig8.14646.1 vs. uniprot
Match: D8LKY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKY3_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 3.530e-43
Identity = 74/81 (91.36%), Postives = 78/81 (96.30%), Query Frame = 0

Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQLEEAAPLEADPTEMDVVDAADAGGAGLRSADDRITTKYMTKYERARILGTRALQI 81
            MSDNEYGDGDGGEEYDVFANEDDDPQ++E  PLEADP +M+VVDAADAGGAGLRSADDRITTKYMTKYERARILGTRALQI
Sbjct:    1 MSDNEYGDGDGGEEYDVFANEDDDPQVDEPTPLEADPADMEVVDAADAGGAGLRSADDRITTKYMTKYERARILGTRALQI 81

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BLAST of mRNA_P-fluviatile_contig8.14646.1 vs. uniprot
Match: A0A5P1E299_ASPOF (Uncharacterized protein n=2 Tax=Petrosaviidae TaxID=1437197 RepID=A0A5P1E299_ASPOF)

HSP 1 Score: 145 bits (366), Expect = 3.190e-42
Identity = 81/140 (57.86%), Postives = 100/140 (71.43%), Query Frame = 0

Query:    1 MSDNEYGDGDGGEEYDVFANEDDDPQLEEAAPLEADPTEMDVVDAADAGGAGLRSADD------RITTKYMTKYERARILGTRALQISMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIMD 134
            M+D +Y D D G     + +E  +P++EE A ++A+    DV D  D  G      D+      R TTKYMTKYERARILGTRALQISMNAPVMV++E ETDPL+IAMKELRERKIP  IRRYLPDGS+EDW ++ELI++
Sbjct:    1 MADEDYNDMDMG-----YEDEPPEPEIEEGAEIDAENNNEDVPD--DIVGGEAEDKDEASVERSRKTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 133

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BLAST of mRNA_P-fluviatile_contig8.14646.1 vs. uniprot
Match: A0A6U3VZ54_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VZ54_9STRA)

HSP 1 Score: 146 bits (368), Expect = 7.770e-42
Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = 0

Query:   34 EADPTEMDVVDAADAG-----GAGLRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIMD 134
            E DP E D V+  + G     G+   +  +R+TT+Y+TKYERAR+LGTRALQISMNAPVMVD++ ETDPLKIAM+ELRERKIPI IRRYLPDGSHEDW I+ELI+D
Sbjct:   91 EHDPNEQDDVNVMNEGEMEILGSSGSALSERVTTRYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLKIAMRELRERKIPIIIRRYLPDGSHEDWKIDELIVD 196

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BLAST of mRNA_P-fluviatile_contig8.14646.1 vs. uniprot
Match: B8C3F5_THAPS (Dna-directed RNA polymerase i (Fragment) n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C3F5_THAPS)

HSP 1 Score: 141 bits (355), Expect = 1.980e-41
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 0

Query:   59 RITTKYMTKYERARILGTRALQISMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIMD 134
            RITT+Y+TKYERAR+LGTRALQISMNAPVMVD+E ETDPLKIA KELRERKIPI IRRYLPDGSHEDW I+ELI+D
Sbjct:    1 RITTRYLTKYERARVLGTRALQISMNAPVMVDLEGETDPLKIAQKELRERKIPIVIRRYLPDGSHEDWGIDELIVD 76

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BLAST of mRNA_P-fluviatile_contig8.14646.1 vs. uniprot
Match: A0A7S2E4M0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E4M0_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.170e-41
Identity = 75/109 (68.81%), Postives = 85/109 (77.98%), Query Frame = 0

Query:   34 EADPTEMDVVDAADAGG--------AGLRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIMD 134
            E DP   D V+A +  G        A   S  +R+TTKY+TKYERAR+LGTRALQISMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW I+ELI+D
Sbjct:   52 EHDPNAQDDVNAVNNEGDLELLGSSAPGGSRAERVTTKYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWKIDELIVD 160

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BLAST of mRNA_P-fluviatile_contig8.14646.1 vs. uniprot
Match: A0A6U0JRN7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JRN7_9STRA)

HSP 1 Score: 144 bits (364), Expect = 3.320e-41
Identity = 70/90 (77.78%), Postives = 80/90 (88.89%), Query Frame = 0

Query:   45 AADAGGAGLRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIMD 134
            AA  GGA      +R+TT+Y+TKYERAR+LGTRALQISMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW+I+ELI+D
Sbjct:  114 AAPGGGAA-----ERVTTRYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWSIDELIVD 198

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BLAST of mRNA_P-fluviatile_contig8.14646.1 vs. uniprot
Match: A0A7S2Y910_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y910_9STRA)

HSP 1 Score: 142 bits (359), Expect = 6.970e-41
Identity = 67/81 (82.72%), Postives = 76/81 (93.83%), Query Frame = 0

Query:   54 RSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAIEELIMD 134
            R+A +RITTKY+TKYERAR+LGTRALQISMNAPVMVD++ ETDPL+IA KELRERKIPI IRRYLPDGSHEDW I+ELI+D
Sbjct:   84 RAATERITTKYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLRIAEKELRERKIPIIIRRYLPDGSHEDWKIDELIID 164

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig8.14646.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig8.14646.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZH45_9STRA	1.690e-47	61.83	DNA-directed RNA polymerases I n=1 Tax=Tribonema m...	[more]
A0A1Z5JVB2_FISSO	2.840e-43	58.90	DNA-directed RNA polymerases I, II, and III subuni...	[more]
A0A7R9ZBL4_9STRA	3.170e-43	62.22	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
D8LKY3_ECTSI	3.530e-43	91.36	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A5P1E299_ASPOF	3.190e-42	57.86	Uncharacterized protein n=2 Tax=Petrosaviidae TaxI...	[more]
A0A6U3VZ54_9STRA	7.770e-42	67.92	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
B8C3F5_THAPS	1.980e-41	86.84	Dna-directed RNA polymerase i (Fragment) n=2 Tax=B...	[more]
A0A7S2E4M0_9STRA	2.170e-41	68.81	Hypothetical protein n=1 Tax=Helicotheca tamesis T...	[more]
A0A6U0JRN7_9STRA	3.320e-41	77.78	Hypothetical protein n=1 Tax=Minutocellus polymorp...	[more]
A0A7S2Y910_9STRA	6.970e-41	82.72	Hypothetical protein n=1 Tax=Amphiprora paludosa T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006110	RNA polymerase, subunit omega/K/RPB6	SMART	SM01409	RNA_pol_Rpb6_2	coord: 59..112 e-value: 6.7E-7 score: 38.9
IPR006110	RNA polymerase, subunit omega/K/RPB6	PFAM	PF01192	RNA_pol_Rpb6	coord: 59..112 e-value: 4.3E-17 score: 61.8
IPR028363	DNA-directed RNA polymerase, subunit RPB6	PIRSF	PIRSF500154	RPB6	coord: 1..134 e-value: 8.4E-50 score: 166.5
IPR012293	RNA polymerase subunit, RPB6/omega	GENE3D	3.90.940.10		coord: 2..134 e-value: 1.2E-47 score: 163.0
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	PIRSF	PIRSF000778	RpoK/RPB6	coord: 1..134 e-value: 1.4E-46 score: 155.9
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	HAMAP	MF_00192	RNApol_arch_K	coord: 63..118 score: 18.892
None	No IPR available	PANTHER	PTHR47227	FAMILY NOT NAMED	coord: 22..133
IPR020708	DNA-directed RNA polymerase, 14-18kDa subunit, conserved site	PROSITE	PS01111	RNA_POL_K_14KD	coord: 66..80
IPR036161	RPB6/omega subunit-like superfamily	SUPERFAMILY	63562	RPB6/omega subunit-like	coord: 15..134

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig8	contig	P-fluviatile_contig8:3515029..3517011 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig8.14646.1	mRNA_P-fluviatile_contig8.14646.1	Porterinema fluviatile SAG_2381	mRNA	P-fluviatile_contig8 3514600..3517011 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-fluviatile_contig8.14646.1 ID=prot_P-fluviatile_contig8.14646.1|Name=mRNA_P-fluviatile_contig8.14646.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=135bp
MSDNEYGDGDGGEEYDVFANEDDDPQLEEAAPLEADPTEMDVVDAADAGG
AGLRSADDRITTKYMTKYERARILGTRALQISMNAPVMVDIENETDPLKI
AMKELRERKIPIKIRRYLPDGSHEDWAIEELIMD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006110	Pol_omega/K/RPB6
IPR028363	RPB6
IPR012293	RNAP_RPB6_omega
IPR006111	RpoK/Rpb6
IPR020708	DNA-dir_RNA_polK_14-18kDa_CS
IPR036161	RPB6/omega-like_sf