prot_P-fluviatile_contig78.14210.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig78.14210.1
Unique Nameprot_P-fluviatile_contig78.14210.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length221
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig78.14210.1 vs. uniprot
Match: D7FZ53_ECTSI (Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ53_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 4.980e-46
Identity = 102/203 (50.25%), Postives = 123/203 (60.59%), Query Frame = 0 
Query:    1 MLRTVFSAAAPRVTTASRWQAS------------VARRSTLTTLTLS---EHGRSSAMDCCAASAATAGWSIPARKCSWRDMSSASAKXXXXXXXXXXXXXXXXXXXXXXXSEEAGRGQDARDPVTGEGIWMDEEDEPLVLEKPKKTQRFCGKVVSDNMDKTIKVAVPYYYYVKGLGRKVIRYSNLMAHDEENSANVSTVAFL 188
            MLRTV +  APR T ASR +A+              RR + +    S   + G+S  +DC AA       S+P R+CSWR+MSSASA                         E    G+ ARDPVTGEGIW+DEEDEPL LEKPKK Q+FCGKV+SDNMDKTIKVAVPY+YYV+ LG+++IRYS +MAHDEENSANV     L
Sbjct:    1 MLRTVLATIAPRATAASRSRAASGPGRCAPFTAFATRRPSPSPSRFSPSPQGGQSLPLDCAAAVTIR---SVP-RRCSWREMSSASAHVAAPGGGDLAMQGEGGGEGQQ--GEMGSSGRYARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVIL 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig78.14210.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ53_ECTSI4.980e-4650.25Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=287... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 137..182
e-value: 3.5E-11
score: 43.1
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 131..182
NoneNo IPR availableGENE3D2.40.50.140coord: 129..186
e-value: 5.0E-11
score: 44.2
NoneNo IPR availablePANTHERPTHR10744:SF137S RIBOSOMAL PROTEIN S17, MITOCHONDRIALcoord: 131..182
NoneNo IPR availablePRODOMPD001295coord: 135..194
e-value: 2.0E-4
score: 106.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 133..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig78contigP-fluviatile_contig78:236140..238196 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig78.14210.1mRNA_P-fluviatile_contig78.14210.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig78 235128..238249 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig78.14210.1 ID=prot_P-fluviatile_contig78.14210.1|Name=mRNA_P-fluviatile_contig78.14210.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=221bp
MLRTVFSAAAPRVTTASRWQASVARRSTLTTLTLSEHGRSSAMDCCAASA
ATAGWSIPARKCSWRDMSSASAKAVASGSGDSEAMQGSAGGGGEGQSEEA
GRGQDARDPVTGEGIWMDEEDEPLVLEKPKKTQRFCGKVVSDNMDKTIKV
AVPYYYYVKGLGRKVIRYSNLMAHDEENSANVSTVAFLPHFRVVVGFLLC
LERGHFSSIHCLSGTCPRDR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000266Ribosomal_S17/S11
IPR012340NA-bd_OB-fold