mRNA_P-fluviatile_contig78.14210.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig78.14210.1
Unique NamemRNA_P-fluviatile_contig78.14210.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig78.14210.1 vs. uniprot
Match: D7FZ53_ECTSI (Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ53_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 4.420e-42
Identity = 102/203 (50.25%), Postives = 123/203 (60.59%), Query Frame = 3 
Query:   54 MLRTVFSAAAPRVTTASRWQAS------------VARRSTLTTLTLS---EHGRSSAMDCCAASAATAGWSIPARKCSWRDMSSASAKXXXXXXXXXXXXXXXXXXXXXXXSEEAGRGQDARDPVTGEGIWMDEEDEPLVLEKPKKTQRFCGKVVSDNMDKTIKVAVPYYYYVKGLGRKVIRYSNLMAHDEENSANVSTVAFL 617
            MLRTV +  APR T ASR +A+              RR + +    S   + G+S  +DC AA       S+P R+CSWR+MSSASA                         E    G+ ARDPVTGEGIW+DEEDEPL LEKPKK Q+FCGKV+SDNMDKTIKVAVPY+YYV+ LG+++IRYS +MAHDEENSANV     L
Sbjct:    1 MLRTVLATIAPRATAASRSRAASGPGRCAPFTAFATRRPSPSPSRFSPSPQGGQSLPLDCAAAVTIR---SVP-RRCSWREMSSASAHVAAPGGGDLAMQGEGGGEGQQ--GEMGSSGRYARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVIL 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig78.14210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ53_ECTSI4.420e-4250.25Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=287... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig78contigP-fluviatile_contig78:235128..238249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRibosomal protein S17
Ec32 orthologEc-02_006320.1
Exons3
Model size1728
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig78.14210.1prot_P-fluviatile_contig78.14210.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig78 236140..238196 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817206.1175807-UTR-P-fluviatile_contig78:235127..2361391622817206.1175807-UTR-P-fluviatile_contig78:235127..236139Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 235128..236139 -
1693571512.3421075-UTR-P-fluviatile_contig78:235127..2361391693571512.3421075-UTR-P-fluviatile_contig78:235127..236139Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 235128..236139 -
1622817206.174885-UTR-P-fluviatile_contig78:238196..2382491622817206.174885-UTR-P-fluviatile_contig78:238196..238249Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 238197..238249 -
1693571512.389793-UTR-P-fluviatile_contig78:238196..2382491693571512.389793-UTR-P-fluviatile_contig78:238196..238249Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 238197..238249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817206.131169-CDS-P-fluviatile_contig78:236139..2363551622817206.131169-CDS-P-fluviatile_contig78:236139..236355Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 236140..236355 -
1693571512.3530602-CDS-P-fluviatile_contig78:236139..2363551693571512.3530602-CDS-P-fluviatile_contig78:236139..236355Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 236140..236355 -
1622817206.150317-CDS-P-fluviatile_contig78:236673..2367541622817206.150317-CDS-P-fluviatile_contig78:236673..236754Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 236674..236754 -
1693571512.3655827-CDS-P-fluviatile_contig78:236673..2367541693571512.3655827-CDS-P-fluviatile_contig78:236673..236754Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 236674..236754 -
1622817206.162309-CDS-P-fluviatile_contig78:237830..2381961622817206.162309-CDS-P-fluviatile_contig78:237830..238196Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 237831..238196 -
1693571512.3791938-CDS-P-fluviatile_contig78:237830..2381961693571512.3791938-CDS-P-fluviatile_contig78:237830..238196Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 237831..238196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig78.14210.1

>prot_P-fluviatile_contig78.14210.1 ID=prot_P-fluviatile_contig78.14210.1|Name=mRNA_P-fluviatile_contig78.14210.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=221bp
MLRTVFSAAAPRVTTASRWQASVARRSTLTTLTLSEHGRSSAMDCCAASA
ATAGWSIPARKCSWRDMSSASAKAVASGSGDSEAMQGSAGGGGEGQSEEA
GRGQDARDPVTGEGIWMDEEDEPLVLEKPKKTQRFCGKVVSDNMDKTIKV
AVPYYYYVKGLGRKVIRYSNLMAHDEENSANVSTVAFLPHFRVVVGFLLC
LERGHFSSIHCLSGTCPRDR*
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mRNA from alignment at P-fluviatile_contig78:235128..238249-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig78.14210.1 ID=mRNA_P-fluviatile_contig78.14210.1|Name=mRNA_P-fluviatile_contig78.14210.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3122bp|location=Sequence derived from alignment at P-fluviatile_contig78:235128..238249- (Porterinema fluviatile SAG_2381)
CAGAAGTGCTCAGTGAGCGTGTACGCGATAGACAAAGCAAGGGAACCTTC
GCAATGTTGAGGACGGTATTTTCAGCGGCTGCTCCTCGAGTAACAACAGC
GAGCAGATGGCAAGCTTCAGTAGCGCGCCGGTCAACCCTCACAACTTTGA
CGCTCTCCGAGCATGGGCGGTCCTCGGCGATGGACTGCTGTGCTGCGTCG
GCCGCGACTGCAGGCTGGTCGATTCCGGCGAGGAAATGCTCTTGGCGCGA
CATGTCCTCGGCCAGCGCGAAGGCGGTCGCATCGGGAAGCGGTGATTCCG
AAGCAATGCAGGGAAGCGCGGGCGGCGGTGGGGAAGGGCAGAGCGAGGAG
GCGGGCCGCGGGCAGGACGCAAGGGACCCGGTCACCGGGGAAGGGATTTG
GATGGACGAGGAAGACGAGGTACGTCGCAGTGCGGCAGCCCAGTGCTTAT
TAGTTTGTTGTGGTTTGCCATGCTGCGCCTGTAACGTGCAATTGCAGATG
CAAAGGCAAACCCGTCGTGAGATCGGGAGGGATTGCCACCTTTGACAAGG
TCAAGAGAGCTGGCTTGACCCGGAGACCGCAGACCTACATCAAACCAACG
AAGAGCGTTCCTAGCTTGACGAGCGGGTTGGGTGAGTTTTTCCAGCAGTA
AACGTCGGCTTGCAGCTTTCCATCCCGATGAGTCGCTCAAAATCAATGTT
GTTTTTGCTTCGCCGACAGCGGCAGCCCAAAAGTACACAAGAACAGCATT
AGTGGTCCTTCGGTGGAATCATGTGCCGGACTTCGGCGCGGCTGGGCGAG
AACATAGTGTTCAACAGTGTTCTAGACAGCAACGCGTCCAATCGCCCATT
TTGCAATCAGATTTTGAAATTTAGCAGCAGCGACGGTAGCACGGCAGTAT
TGGTATTTGGTGAAGCATACGAAGGGCCTCTCCATCTCCGCTGATTGTGC
GAGGCCTTGAATCGGTCGATGTTGGTGGCCGTCAGGCTGTGTTGAGTGCA
CGTGCGCAGATTATGTCTGTCGGGGTGACTCGCGCACGAGCAGATCCGAC
GAGAGCCCGAGTGTTTGGATGCCTACTTCTATGCGGATGCCGCGTGTGTA
GTGCACTCCCTCTCCCTCGTCAGCCGAGCTTTGGATGGAGAATGGCACAT
CGATCACGGAATCTGCAGCAGGCCAGCAGGACGGACTCTGTGTGCACAAA
CTAAACGACTTGTCGAAAGCAAACAATATTAATAGTACCTTTTTTTTCTG
ACTCCGCGGTACGTTGTCTTCGTAAGAAGCCAAACAATATATAGCGCGCT
GCGGGTGGATCTCACTTTTTCTGTGACTCGAGCTAGCGGACAGGGTCAAA
TCGTTTCTTCCCGCCTCCTTCGTGCTTGGTCCTCGTTGGCCTCTCCCTGG
CCCACAAACCTCCCGTCGTTTGCCTTCCGCCCCCGACTGTGTCGTTTTTC
GGCGTCGATCCCGGGCACTAAATGTGTGTTGCCCAATCGGAACAGCCCCT
AGTGCTCGAAAAGCCGAAGAAGACCCAGAGGTTCTGCGGCAAGGTCGTCT
CCGACAACATGGATAAGACCATCAAGGTACGGCGTGCGTGCGCTGCCAAA
AAGGAAGCGCCCTCTAACGCAGGCCATCTTGTACCGTGCGTTTCGTTGCC
CTAGACCGTCTCACGACCGTCCTCAGTAGTACCGCCGTCCACGATCACCT
TCGACCCAGAGATGACAGAATATAGGGGGCCTTCCCGACCAGGCGCTCTT
TTTGTTTCATTGAGTCAGTTCTGAGGTAATGACAACGGCTACGAGTGGGC
ATCGCTAGCGGTTGGTGGCAAGGCCCCTGAATATGGTGGTGTTTGTCGAT
CATGTCGACCATGACACTGTTCAATAACTGCTGTTGCTGTGCAGGTGGCT
GTCCCGTACTACTACTATGTCAAGGGTCTGGGCCGAAAAGTCATCCGGTA
CAGCAACCTGATGGCCCACGATGAGGAAAACTCCGCCAACGTGAGTACCG
TTGCTTTCCTCCCACATTTCCGAGTGGTGGTCGGCTTTCTTCTTTGCCTT
GAACGAGGACATTTTTCTTCCATCCATTGCCTCTCAGGCACTTGCCCAAG
AGATCGTTGAGTTCAAGCTCGATTGGTATCCAACGGTAGGCGTCCTTATG
TTTGGAGTCCTATTTGTCGAATCGTTTCACAACGAAACGCTCAACGGGCT
ATATTCTTCGAGGGGCTCATTCCCGCACGCTCCTGTTTCCGCCGCCCGAC
CTAACACAAGCTAGACTTGTCTGAGGCCTGCAGTGGGAATCGCTCACAAA
CGAAGGCCTTCGCACAACATCACATCATCACGTGGCATGATATCCTGTCT
TCGCCCCTCCCTCCGCGCTTTCGTCCGCCTGCTTGCTTGCCAATCGGCCT
GTCTCCGTCGTATTTTCCATCGCTATCGTCATCTCCATCGCCGTCGCCGT
TGCCATCGCCCCAAACCGGAAAAATTAACCAAACTGCCGACTGCAGATCG
GTGACACGGTGATCCTGGTAGACTGCCGACGAAAGAGCAAGAGAAAAAAA
CACAAGCTCGATAGCATCGTGCGCAAGCTGCCGAGGCTCGACACGTGAAT
TGCACAGCAGGAATATCGCCGCTGATAATCCGTCGAGTCATGCAGCATGA
TGGCAGCGGGGTGGTGGATGGCAGTTGGAGACTTTTTATTTTTGAGCGTG
TCGTGTTTTGTCCTGCTATTCGTCGAAAATTTTCGTTGATCTTGCTGCGA
TTACTCGTCCACCTGGTGCAATCTTTGGTGATGTTACTTTTTGTGAAGTT
ATCGTGAGAGCTTTAGGACAAGCTCTGACGGGGTTCTGGTGTCTGGGAAA
TGTCAACACACAAAGAGGCGCGAATTGTGCCGAAATTAAGCGCAAACTCC
CTGTCGGCCCGTAATACACCCCGCAGCGGTACGCGGTGCATGGCATACAG
CAACTCCGGCGTTACATCCCCAGACAGACAAAAAGTTTGATAAATTCTAC
CGACGGGTTCTGATGGTGATCCAATTTTGGCCCGATCCGGTCTTTGTTTA
TCTCGGCGTTTAGGGCAAGTTTGACATGTAATGGGCTCAGGATCAGACGT
TACTTCAGGAAGGCGCTCTCAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig78:235128..238249-

>mRNA_P-fluviatile_contig78.14210.1 ID=mRNA_P-fluviatile_contig78.14210.1|Name=mRNA_P-fluviatile_contig78.14210.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1326bp|location=Sequence derived from alignment at P-fluviatile_contig78:235128..238249- (Porterinema fluviatile SAG_2381)
ATGTTGAGGACGGTATTTTCAGCGGCTGCTCCTCGAGTAACAACAGCGAG
CAGATGGCAAGCTTCAGTAGCGCGCCGGTCAACCCTCACAACTTTGACGC
TCTCCGAGCATGGGCGGTCCTCGGCGATGGACTGCTGTGCTGCGTCGGCC
GCGACTGCAGGCTGGTCGATTCCGGCGAGGAAATGCTCTTGGCGCGACAT
GTCCTCGGCCAGCGCGAAGGCGGTCGCATCGGGAAGCGGTGATTCCGAAG
CAATGCAGGGAAGCGCGGGCGGCGGTGGGGAAGGGCAGAGCGAGGAGGCG
GGCCGCGGGCAGGACGCAAGGGACCCGGTCACCGGGGAAGGGATTTGGAT
GGACGAGGAAGACGAGATGTTGAGGACGGTATTTTCAGCGGCTGCTCCTC
GAGTAACAACAGCGAGCAGATGGCAAGCTTCAGTAGCGCGCCGGTCAACC
CTCACAACTTTGACGCTCTCCGAGCATGGGCGGTCCTCGGCGATGGACTG
CTGTGCTGCGTCGGCCGCGACTGCAGGCTGGTCGATTCCGGCGAGGAAAT
GCTCTTGGCGCGACATGTCCTCGGCCAGCGCGAAGGCGGTCGCATCGGGA
AGCGGTGATTCCGAAGCAATGCAGGGAAGCGCGGGCGGCGGTGGGGAAGG
GCAGAGCGAGGAGGCGGGCCGCGGGCAGGACGCAAGGGACCCGGTCACCG
GGGAAGGGATTTGGATGGACGAGGAAGACGAGCCCCTAGTGCTCGAAAAG
CCGAAGAAGACCCAGAGGTTCTGCGGCAAGGTCGTCTCCGACAACATGGA
TAAGACCATCAAGCCCCTAGTGCTCGAAAAGCCGAAGAAGACCCAGAGGT
TCTGCGGCAAGGTCGTCTCCGACAACATGGATAAGACCATCAAGGTGGCT
GTCCCGTACTACTACTATGTCAAGGGTCTGGGCCGAAAAGTCATCCGGTA
CAGCAACCTGATGGCCCACGATGAGGAAAACTCCGCCAACGTGAGTACCG
TTGCTTTCCTCCCACATTTCCGAGTGGTGGTCGGCTTTCTTCTTTGCCTT
GAACGAGGACATTTTTCTTCCATCCATTGCCTCTCAGGCACTTGCCCAAG
AGATCGTTGAGTGGCTGTCCCGTACTACTACTATGTCAAGGGTCTGGGCC
GAAAAGTCATCCGGTACAGCAACCTGATGGCCCACGATGAGGAAAACTCC
GCCAACGTGAGTACCGTTGCTTTCCTCCCACATTTCCGAGTGGTGGTCGG
CTTTCTTCTTTGCCTTGAACGAGGACATTTTTCTTCCATCCATTGCCTCT
CAGGCACTTGCCCAAGAGATCGTTGA
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