prot_P-fluviatile_contig63.12976.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig63.12976.1
Unique Nameprot_P-fluviatile_contig63.12976.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length252
Homology
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BLAST of mRNA_P-fluviatile_contig63.12976.1 vs. uniprot
Match: D7G6K1_ECTSI (CRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K1_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 7.160e-39
Identity = 83/123 (67.48%), Postives = 92/123 (74.80%), Query Frame = 0 
Query:  125 ELDNKTVQELWSRVKKQSISVGKRGVKPSHVRSLNSLVKAHTLVKVKINIPNADLMEVGLELAGKDGDGAAEQGLDEDEGNSVGDGGSSSEAAADVSVVTVNANQRTILFANTEFLAAEARGE 247
            +L  KTV+ELW RVKKQ ISVGK G+KPSHVRSLNSL+ AHTLVKVK+NIPNADL EVGLELAGK G   A  G D DE +           A  VSVVTVN NQ+ ILFANTEFLA++ARGE
Sbjct:   16 DLAEKTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELAGKGG--LALGGGDGDEAS----------PAVGVSVVTVNPNQKVILFANTEFLASQARGE 126
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BLAST of mRNA_P-fluviatile_contig63.12976.1 vs. uniprot
Match: A0A6H5JP08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP08_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 7.840e-37
Identity = 79/123 (64.23%), Postives = 89/123 (72.36%), Query Frame = 0 
Query:  125 ELDNKTVQELWSRVKKQSISVGKRGVKPSHVRSLNSLVKAHTLVKVKINIPNADLMEVGLELAGKDGDGAAEQGLDEDEGNSVGDGGSSSEAAADVSVVTVNANQRTILFANTEFLAAEARGE 247
            +L  KTV+ELW RVKKQ ISVGK G+KPSHVRSLNSL+ AHTLVKVK+NIPNADL EVGLEL GK G              S G  G  +  A  VSVVTVN NQ+ ILFANT+FLA++ARGE
Sbjct:   93 DLAEKTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELVGKGGL------------KSGGGDGDEASRAVGVSVVTVNPNQKVILFANTDFLASQARGE 203
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig63.12976.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6K1_ECTSI7.160e-3967.48CRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JP08_9PHAE7.840e-3764.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001890RNA-binding, CRM domainPFAMPF01985CRS1_YhbYcoord: 140..187
e-value: 1.3E-4
score: 22.0
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..251
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..31
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.485

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig63contigP-fluviatile_contig63:223195..227666 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig63.12976.1mRNA_P-fluviatile_contig63.12976.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig63 221757..227674 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig63.12976.1 ID=prot_P-fluviatile_contig63.12976.1|Name=mRNA_P-fluviatile_contig63.12976.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=252bp
MMPIDRASHRRCALLLALTAGVIDCRRFAHGFCNASPLASPSVVLGRGGV
VRAALRPQAADDTDGRGCTCAACVAAATAGDGLRRRSPGRKSREGLGRAA
FVVLGAEEGDGSRSASAAAASAAVELDNKTVQELWSRVKKQSISVGKRGV
KPSHVRSLNSLVKAHTLVKVKINIPNADLMEVGLELAGKDGDGAAEQGLD
EDEGNSVGDGGSSSEAAADVSVVTVNANQRTILFANTEFLAAEARGELFN
G*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001890RNA-binding_CRM