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Homology
BLAST of mRNA_P-fluviatile_contig63.12976.1 vs. uniprot
Match: D7G6K1_ECTSI (CRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K1_ECTSI) HSP 1 Score: 140 bits (354), Expect = 1.370e-35 Identity = 83/123 (67.48%), Postives = 92/123 (74.80%), Query Frame = 3
Query: 381 ELDNKTVQELWSRVKKQSISVGKRGVKPSHVRSLNSLVKAHTLVKVKINIPNADLMEVGLELAGKDGDGAAEQGLDEDEGNSVGDGGSSSEAAADVSVVTVNANQRTILFANTEFLAAEARGE 749
+L KTV+ELW RVKKQ ISVGK G+KPSHVRSLNSL+ AHTLVKVK+NIPNADL EVGLELAGK G A G D DE + A VSVVTVN NQ+ ILFANTEFLA++ARGE
Sbjct: 16 DLAEKTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELAGKGG--LALGGGDGDEAS----------PAVGVSVVTVNPNQKVILFANTEFLASQARGE 126
BLAST of mRNA_P-fluviatile_contig63.12976.1 vs. uniprot
Match: A0A6H5JP08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP08_9PHAE) HSP 1 Score: 138 bits (348), Expect = 9.030e-34 Identity = 79/125 (63.20%), Postives = 89/125 (71.20%), Query Frame = 3
Query: 381 ELDNKTVQELWSRVKKQSISVGKRGVKPSHVRSLNSLVKAHTLVKVKINIPNADLMEVGLELAGKDGDGAAEQGLDEDEGNSVGDGGSSSEAAADVSVVTVNANQRTILFANTEFLAAEARGELF 755
+L KTV+ELW RVKKQ ISVGK G+KPSHVRSLNSL+ AHTLVKVK+NIPNADL EVGLEL GK G S G G + A VSVVTVN NQ+ ILFANT+FLA++ARGE
Sbjct: 93 DLAEKTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELVGKGGL------------KSGGGDGDEASRAVGVSVVTVNPNQKVILFANTDFLASQARGETL 205
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | RNA-binding, CRM domain |
| Ec32 ortholog | Ec-05_006480.1 |
| Exons | 3 |
| Model size | 2202 |
| Cds size | 756 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817043.5435886-UTR-P-fluviatile_contig63:221756..223194 | 1622817043.5435886-UTR-P-fluviatile_contig63:221756..223194 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig63 221757..223194 - |
| 1693570923.8251188-UTR-P-fluviatile_contig63:221756..223194 | 1693570923.8251188-UTR-P-fluviatile_contig63:221756..223194 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig63 221757..223194 - |
| 1622817043.5904891-UTR-P-fluviatile_contig63:227666..227674 | 1622817043.5904891-UTR-P-fluviatile_contig63:227666..227674 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig63 227667..227674 - |
| 1693570923.8618045-UTR-P-fluviatile_contig63:227666..227674 | 1693570923.8618045-UTR-P-fluviatile_contig63:227666..227674 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig63 227667..227674 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817043.5552125-CDS-P-fluviatile_contig63:223194..223437 | 1622817043.5552125-CDS-P-fluviatile_contig63:223194..223437 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig63 223195..223437 - |
| 1693570923.8337262-CDS-P-fluviatile_contig63:223194..223437 | 1693570923.8337262-CDS-P-fluviatile_contig63:223194..223437 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig63 223195..223437 - |
| 1622817043.5656707-CDS-P-fluviatile_contig63:225183..225300 | 1622817043.5656707-CDS-P-fluviatile_contig63:225183..225300 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig63 225184..225300 - |
| 1693570923.8426387-CDS-P-fluviatile_contig63:225183..225300 | 1693570923.8426387-CDS-P-fluviatile_contig63:225183..225300 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig63 225184..225300 - |
| 1622817043.5772555-CDS-P-fluviatile_contig63:227270..227666 | 1622817043.5772555-CDS-P-fluviatile_contig63:227270..227666 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig63 227271..227666 - |
| 1693570923.8522055-CDS-P-fluviatile_contig63:227270..227666 | 1693570923.8522055-CDS-P-fluviatile_contig63:227270..227666 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig63 227271..227666 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig63.12976.1 >prot_P-fluviatile_contig63.12976.1 ID=prot_P-fluviatile_contig63.12976.1|Name=mRNA_P-fluviatile_contig63.12976.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=252bp
MMPIDRASHRRCALLLALTAGVIDCRRFAHGFCNASPLASPSVVLGRGGV VRAALRPQAADDTDGRGCTCAACVAAATAGDGLRRRSPGRKSREGLGRAA FVVLGAEEGDGSRSASAAAASAAVELDNKTVQELWSRVKKQSISVGKRGV KPSHVRSLNSLVKAHTLVKVKINIPNADLMEVGLELAGKDGDGAAEQGLD EDEGNSVGDGGSSSEAAADVSVVTVNANQRTILFANTEFLAAEARGELFN G* back to topmRNA from alignment at P-fluviatile_contig63:221757..227674- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig63.12976.1 ID=mRNA_P-fluviatile_contig63.12976.1|Name=mRNA_P-fluviatile_contig63.12976.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5918bp|location=Sequence derived from alignment at P-fluviatile_contig63:221757..227674- (Porterinema fluviatile SAG_2381) GGACACACATGATGCCGATCGATCGAGCATCCCATCGCCGGTGCGCCCTC
CTGCTGGCGCTGACCGCCGGAGTCATCGACTGCCGCCGTTTTGCGCACGG
ATTCTGCAACGCTTCTCCCTTGGCCTCGCCATCGGTCGTCCTTGGCCGAG
GAGGCGTGGTGAGAGCAGCCCTGCGACCGCAAGCTGCTGATGATACTGAC
GGGAGAGGTTGCACCTGTGCCGCGTGCGTCGCTGCCGCCACCGCCGGGGA
TGGATTGCGGCGGCGGTCGCCGGGGCGAAAAAGCCGTGAGGGCTTGGGGC
GTGCGGCCTTTGTTGTACTCGGCGCCGAAGAGGGTGATGGTTCTCGGAGT
GCCTCCGCCGCTGCTGCTTCCGCCGCAGTTGAACTGGACAACAAGACTGT
GCAGGTGGGTGGAGGACGGAGGGGTGCATTCAGACAGATCGCAACATTTC
AGTGGTGCGGGTCCTGGTTGAGTCCTGGTTGAATCCCTTTGGCTTGATGC
TCCTTATTATGCTGGTGTAGATGCGGTTGCGTTAGATTGGCGTTTGCGAT
TTTGTGGTTGCTTGTTGCCGTGCCTCGTGTTGTTCGGCAACTCGGTGCAA
CAAGTCAGAGTTGCGACGGACACGTCCGATGTTCGTGAGTTAACACCATA
ATAAGGACGGCAAAAAAGGGCAGCTGGAGTACTCATTGCCAGGTCGTGAA
TTTTGATTAATTATTCTCTCTCCACCCCGACACGTGCAAAAAATATTGCG
AGAGATGGCCTCGGGCCGATCAAGCGGCGTGATTCTCTTCATTGCACTCA
AATGCTGCCATGGCCCGAAACACACATCCCACAGTCCTGTGCTCATGGTG
ACGAAATGACAATTGCGAACTTCAATGTGTCGGTGTGTACGCTTTGCGAA
CTGCTTTGCCACACCGTTGGCTATTGGATCCCTTTTGCAGCATTGGTTTG
ACCTCACTTTCCCTGCATTATGAAAACACACCCTATTAATAGGCTTGTAA
CCCTGAGGGGAGATTTTTCCTCATAACATAAACATCTACCCCATCCCATT
CAATAAGCAGTCAATAGCCTACCGCGTGCAAGCCTAACACACACCCTAAA
ATCCTTCAAGTCCAATAACGCTCCTGTGATGTTTGTTTGTATGTCCCCCC
CTTTCAACGACAAGACGACGGTGCATACACAATACACGCACACCCGCCGG
AGGACGGATTGTTCGTGGCTCGGCTGCTGCACCACCCGAGCGGGTTCTAG
CTCATGACGAATAGGCTTTTGTACACCGAAAACGATTGACTGTTTTTTTA
TTATATACTTAAGTGTGCATTGAATCAAAAATGGTGTATTTGAATCGGGA
AAAAAATCGCTCAAGGACTTCAAGCCTAATGACGAAGCGTTGTCGAGAAG
CTGTCGGTGGCACCAACCACATTGTTTTTTGGGGGGGAGGATGCCGCAAG
GTGCCACGAGACACACCACACCGGCTGGGTCAGATTGTCCAGATCTCCAT
GTTCTCACATCATGGACGCATGGAGGACACCAACCTATTATGCTATTTAT
TAACAATAACCCGACGCAACTTCTATCTTGGCGCCCAATACCCGTTTTAA
AGGAGGCCAAGATTTCCCGGATTTACGGACTTGCTGGCATTCTGGGTATT
TGGAGAACAAGAGAAATCGGAAATAATCGGAAAATCGAAGTGATCGTGGA
GGTCCGAGATCAACCTCCCAGGGTTTCTCTAGTTTCCTGAAAATTCCCCG
ATTTCTCGGGACTTTTGTGTGTTTTCCGACAAATTGAACTCGGAAAATGC
GGAGAATTTCGGCCTCGTTCAGAACCGGCGTGAGGGGAGGCTTATGTTGC
GATGTTGAACTTTGCTATTCGGTGTGGGGGGCGGGGCTCGATACCATTCG
TCACAAACACCACGGTTCGCTGACGCGGAAGGGAAGAAAAACCGCAATTA
CGTGGCGTCAAGCCTGTAATCCCTGCGCGGTCCTTCAGAGGCTGTGGAGA
GGAGCGAGGAAGCAATTTGGTACCATTCTTATGTCCATGGTGCATCCTGC
CTTTCTGCCCCTGTTGCATAACTGTTGGTGCTGTGCATGTCTTCGTGACG
CCTGCAGCCCCGCTCGACCCATCAGAAGCTTTCGGGGGGAGTGGGAAAGC
ACCTTGAAATAGTCGTAATGTTTCGGTATCCTGTTATCTCCCCGGCTGCC
AGATTGTGGTCTACCAAAGGAACGGATAAAAATAACTTTAAAAGGAGAAA
CGCACACTAAAAGTGAGAGGACGGGCCACAAAACAACGATATCTTGGATG
CATATCGTTCGAAATACTTGCTGGATTCACCCCCAAATCTTCGCGTTGTT
TCCCGCCCTGCTGTTACCCCGCAGGAGCTGTGGAGCAGAGTGAAGAAGCA
GTCGATAAGCGTCGGGAAAAGAGGCGTGAAGCCCAGCCACGTGCGCTCGC
TAAACTCCCTCGTGAAGGCGCATACCTTGGTCAAGGTCAAGGTGCGTTTT
TTGTCAGGGCTTTGAAAAGGATGTGTTTGTCAGGGCTTTGAAACGGCTGT
GTTTGTCAGGGCTTTGAAACGGCTGTGTTTGTCAGGGCTTTGAAAAGGCT
GTGTTTGTCAGGGTTTTGAAACGGCTGTTTGTCAGGGTTTCAAAACGGCT
ATTATACCCTATCTTTGAACGTCCGTTTCCGGTTTAGCCGATGCCTCGAA
GAAAGGGCGCATACGTAGGTGACGGTCGAGGTTATATCTTCTTTGCTCGA
GGATAGGGAATCAGCTGGGCTTCCGCTGTCTTAAACAACAGTTTTCTGTC
TTAAAATCAATAGTTTTCTGTCTTAAAAACAACAGTTTTCTGGCTTCAAC
TACAGTTTTCGGCGAAGCGGATTGTCGTCCCAGCCGGTACATGGGACGGT
GAACGAGGCGAAATATCGGGTTAGCGAAGCCCTCGTCGGATATCAGCAAG
GGTTGATTCCGTGTCAAAATCGACCCAGTTCGATCAGGGGATTTTTTGTT
CCTATTTAAACCTTGTGTAGTTTTGGCGCCTGGGCTCAAAGTCTGGTCCA
TAACAGGGGGGGATAAGGTGGTTTCGTTATACCGAAGTGGGGGTGCGCGC
CACACTCCCCTGGCCCAGTTCTCAAAGCTCGACTGCTTCCCCTTGATTAT
GTCACAGGGGACGATTTTTTTTACCAACGGAATGGTTTCATTTTGGTTGC
ATTGTTAAAGTTCTGGCTTTTGAGAAGGTGAGTGCCTGACGACACGCTTT
TCCGGAACAAGTCGATCAAGTCGGCCATTTTCTCCCCATCGAGCTCTCTC
GCTTCGAACATCCTGGGGTTGCGGAGAACTCGATCACGTCGTCACATCTC
CCCCGATTGACGTTTTGTCGGAGATTGAAAATTCGACATGGCCGGCTTCT
TCGATGGCATTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTGGTTATTGCCGTCGTCG
TCGTCGTCGTTGCTGTTGGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGATGTTGT
TGTTGTTGTTGTTGTTGTTGTCGTCGTCGTCGTCGTCGTCGTCGTCGTGG
TTGTTGCTGTTGGTGGCGGTGCTGTTGTTGTTGCTGTCGATGCCGGTGTT
GGCGTTGTTGGTAATGTTGCTGTTGGTGGCGGCGCTCACAAGTCAATCGC
AATGTCTGAAATCCGTTTCTCCTTTGAAACATTTATCGGGAAAATCATCC
CAATTCACAATGTGAACAATCTTCCGCACCGCAGCTTGACTCTTTCGGCC
CGCTCAACGCAGCGCTCCCATCCAACCTGACATTTGAGTGCAGTTCACAA
TGCCTTTTTGGTGTCGACATCCCCGCTGTGCTGGACCATAGATTACCGAT
CTATTATACTCCATTACCGACATCGCTGAACCATCCTGGTCCCTGTATCG
GTGCCGTGGTATCACAGACGCCGTCAGCTCTTGTCTTCTGCCTGGATGAT
CCTCTTCGGGTTCCACCGCAATGGGCGATGGGTTACCCACTGAAATGGAT
AGCCTCTGCCTTCGCAACCAGTATTCTTTTCGTTTTCGTGAGCTTTTATT
TCGGTGTTTCTCTTGTGTTCTGTTGTATTTATTTCTCTCGTTTATTTTAT
TTTCGTCTATTTCAATGTATTCCCTTGCTCCCTTTAGATCAACATACCGA
ACGCCGACCTGATGGAGGTGGGGCTTGAGCTCGCTGGAAAGGATGGCGAT
GGGGCTGCGGAGCAAGGGTTGGATGAGGACGAGGGCAACAGCGTCGGCGA
CGGCGGATCGTCGTCCGAGGCGGCTGCCGACGTATCGGTCGTGACGGTCA
ACGCCAACCAGAGGACGATCCTGTTCGCCAACACGGAGTTTCTGGCCGCT
GAGGCGAGGGGGGAGCTTTTCAATGGATAGGGCTGAAAAAGAAATAGGAT
GGAAACCAATGACGAATTAGAAAAATAGATCAGCCAAGAATTATGAAAGG
AAACGAGGGATGGAAAGCTTCAGCTCAGGCGACTATGTCCTGTTCGCCAA
TGCGAGTTTTCTGGCGATGAATGAAGGGAAGAGGATATCAATGGATGGAA
AAAAGTACGGCAAGCCACGGGATCGATCAGTGCTAAAGCGGTGCCACTCG
GCGGTTCGAAAGGCTTCCGCTCAGGCGGGTCGAGGTTAGCTTAAGGTCCT
GTGCTTCGCCAGGCGGAAATACGGAGGTTGCGATGGAATGAAAAAGCGAA
CCTTGGAGTGGCGTTAAGCTGCGAAGAGCGTTCGACGATCGAAGAAAAAC
ACACCTTGACCAGTCTTTGATGAAAGGACAATGGCTTGAAGTGTTGATGA
CTTTCACCTCACAGGAGCCCGGCGCAGAGCTCGTTTCTCGACGGAATGAC
ATGTTTTCGAGGTTTCTGAATATGGCTTCAGCGAAGACGGCGACGTTGTT
TCTGCTTGCATGCGACTATTTTCTCGCTGTAGTGGTGTGTCTTGTGGCGA
CTCAAACGGAGAGAAAAGACGTGCCCGCCGTTTGCTGACTGGCCAAAGAA
GTTGAATCCGATAGGATTTCTGTAGCGGACCGATCTTGTGTTGACCTTTT
CAGGAATGGAACGCCAAGATATGACTATTTCTGAGAGAGCAGGCCGTGCG
TGACCCGGTTGCCACGCACCTGGTGTGACCGCGATGTTTCCAATTTTGGA
CAGTCCAAATTTTAACGTCGGCTTCCGAGCATATGAAGAAGGGCCGCGCA
ATCCAATGAAGGCACGCAATGTGACTGCGGTACTAGCAATTGGCCTCTTG
ATGACTGCTCTGCCTGCGACTTGCCTCGAGCGCTTGAGTTTTAGCACGAT
GTCTGTGCCTCCTTCTCGCTTGGTCTTCTGATTATTTGCGTCACCTTTGA
ACTTGTAGCGTCATCGGGCTTCGAAACGCGAAGGACTCAACGGGAAAGGT
TGCCACCAACATTGTACTGGAATAAAACCGCATTTGTTACCGGGGCGCCG
CGCGATGCCCTATCGTATGGGCATTGGTCTTGCTAACTTTTTTTCTTATT
TTTCCGGTCGTGAAAAAACAAGCGCATCTCGTCCAAAACAGCTTCCAGCC
GACGGGAGTGACGTGGACTCAGGGTGTTATTTCGTCCGCGGACATGATTG
GCAAAGACATTTACTTGAACGATGAATCCAGGGTGTGAATTTGTACGCGG
ATCCGTCCCGCGGATACTAGGCGTTTTTTCGCGAGACGAGTGTCCTGGAG
GAGTTTTGAGCGAGCCAAGTGTGATGAAGATTTCTGTGCGCATAAGTTCC
CACGACAAGTTGGCATTGGATCCAACATGGAGTGTCAATCCGTGTCAATC
CTGTTGAACGCGCTGAGC back to topCoding sequence (CDS) from alignment at P-fluviatile_contig63:221757..227674- >mRNA_P-fluviatile_contig63.12976.1 ID=mRNA_P-fluviatile_contig63.12976.1|Name=mRNA_P-fluviatile_contig63.12976.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1512bp|location=Sequence derived from alignment at P-fluviatile_contig63:221757..227674- (Porterinema fluviatile SAG_2381) ATGATGCCGATCGATCGAGCATCCCATCGCCGGTGCGCCCTCCTGCTGGC GCTGACCGCCGGAGTCATCGACTGCCGCCGTTTTGCGCACGGATTCTGCA ACGCTTCTCCCTTGGCCTCGCCATCGGTCGTCCTTGGCCGAGGAGGCGTG GTGAGAGCAGCCCTGCGACCGCAAGCTGCTGATGATACTGACGGGAGAGG TTGCACCTGTGCCGCGTGCGTCGCTGCCGCCACCGCCGGGGATGGATTGC GGCGGCGGTCGCCGGGGCGAAAAAGCCGTGAGGGCTTGGGGCGTGCGGCC TTTGTTGTACTCGGCGCCGAAGAGGGTGATGGTTCTCGGAGTGCCTCCGC CGCTGCTGCTTCCGCCGCAGTTGAACTGGACAACAAGACTGTGCAGATGA TGCCGATCGATCGAGCATCCCATCGCCGGTGCGCCCTCCTGCTGGCGCTG ACCGCCGGAGTCATCGACTGCCGCCGTTTTGCGCACGGATTCTGCAACGC TTCTCCCTTGGCCTCGCCATCGGTCGTCCTTGGCCGAGGAGGCGTGGTGA GAGCAGCCCTGCGACCGCAAGCTGCTGATGATACTGACGGGAGAGGTTGC ACCTGTGCCGCGTGCGTCGCTGCCGCCACCGCCGGGGATGGATTGCGGCG GCGGTCGCCGGGGCGAAAAAGCCGTGAGGGCTTGGGGCGTGCGGCCTTTG TTGTACTCGGCGCCGAAGAGGGTGATGGTTCTCGGAGTGCCTCCGCCGCT GCTGCTTCCGCCGCAGTTGAACTGGACAACAAGACTGTGCAGGAGCTGTG GAGCAGAGTGAAGAAGCAGTCGATAAGCGTCGGGAAAAGAGGCGTGAAGC CCAGCCACGTGCGCTCGCTAAACTCCCTCGTGAAGGCGCATACCTTGGTC AAGGTCAAGGAGCTGTGGAGCAGAGTGAAGAAGCAGTCGATAAGCGTCGG GAAAAGAGGCGTGAAGCCCAGCCACGTGCGCTCGCTAAACTCCCTCGTGA AGGCGCATACCTTGGTCAAGGTCAAGATCAACATACCGAACGCCGACCTG ATGGAGGTGGGGCTTGAGCTCGCTGGAAAGGATGGCGATGGGGCTGCGGA GCAAGGGTTGGATGAGGACGAGGGCAACAGCGTCGGCGACGGCGGATCGT CGTCCGAGGCGGCTGCCGACGTATCGGTCGTGACGGTCAACGCCAACCAG AGGACGATCCTGTTCGCCAACACGGAGTTTCTGGCCGCTGAGGCGAGGGG GGAGCTTTTCAATGGATAGATCAACATACCGAACGCCGACCTGATGGAGG TGGGGCTTGAGCTCGCTGGAAAGGATGGCGATGGGGCTGCGGAGCAAGGG TTGGATGAGGACGAGGGCAACAGCGTCGGCGACGGCGGATCGTCGTCCGA GGCGGCTGCCGACGTATCGGTCGTGACGGTCAACGCCAACCAGAGGACGA TCCTGTTCGCCAACACGGAGTTTCTGGCCGCTGAGGCGAGGGGGGAGCTT TTCAATGGATAG back to top
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