prot_P-fluviatile_contig14.2316.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig14.2316.1
Unique Nameprot_P-fluviatile_contig14.2316.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length598
Homology
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BLAST of mRNA_P-fluviatile_contig14.2316.1 vs. uniprot
Match: A0A6H5KKU8_9PHAE (TFIIS N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKU8_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 9.730e-74
Identity = 315/502 (62.75%), Postives = 338/502 (67.33%), Query Frame = 0 
Query:  111 ALAAVRRFVASLPPVEYGRDEGWVASKEEA-REAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSRMKSSPEPIWKQHRRIKEETGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SREAQIQTGRKLTHRLSKASAEGKFNKPEVLEVLRKLGELEPSLELLQQSGCGKAVANARKYFSGGQVKHNDKDVATAASNLRTRWMNTLAGGGGKGGAPGTPRASAPSSSFAAAADKTTTPRDPDAVKQVPSSASSVSNKKLSVEESFRGRTPKVETGSA--------------DGGXXXXXXXSKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASLGLVAMKALEEPRRRAMGMLMSVLGTAAVAMERCKAIEEELHQSQGREINKEYLRRLRTAVFSMEGPEGQRLRDKVMSEMVVPTDFVSKSCEELRALAGL 596
            ALA VR FVA LPP EYGRDEGW+ SKEEA REA       XXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXXXXXX              ++MKSS EPIWKQHRR+      XXXXXXXXXXXXXXXXXXXXXX          +RE++IQ GRKLT RL+KA  EGKFNK EVLE+L+KLGELEPS ELLQQSGCGKAVA+ARKYFSGGQVKHNDK+VATAAS+LRTRWMN LAG                                                     EE+ R R+PK ETG                   XXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXX  S  +    A +EPRRRAMGMLMSVLGT A A+ERC  IEEELHQSQG EI+KEYLRRLRTAVFSMEG + Q+LRDKVMS  VV +DFVSKSCEELRA+AGL
Sbjct:  529 ALAFVREFVAGLPPTEYGRDEGWIPSKEEAAREASARAGESXXXXXXXXXXXXXXXNKRDRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------TQMKSSSEPIWKQHRRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPPGAGAGGNRESEIQMGRKLTQRLAKAGVEGKFNKEEVLEILQKLGELEPSRELLQQSGCGKAVASARKYFSGGQVKHNDKEVATAASSLRTRWMNALAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVG---------EETPRSRSPKPETGGVAREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKETTKEVXXXXXXXXXXXXXXXXXXXSAKMSTAVAKDEPRRRAMGMLMSVLGTTAAALERCTEIEEELHQSQGGEISKEYLRRLRTAVFSMEGSDSQKLRDKVMSGYVVSSDFVSKSCEELRAMAGL 1007
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2316.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKU8_9PHAE9.730e-7462.75TFIIS N-terminal domain-containing protein n=2 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 198..218
IPR017923Transcription factor IIS, N-terminalPFAMPF08711Med26coord: 302..356
e-value: 5.8E-6
score: 26.2
IPR017923Transcription factor IIS, N-terminalPROSITEPS51319TFIIS_Ncoord: 280..362
score: 12.181
IPR035441TFIIS/LEDGF domain superfamilyGENE3D1.20.930.10coord: 271..365
e-value: 1.3E-10
score: 42.7
IPR035441TFIIS/LEDGF domain superfamilySUPERFAMILY47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 284..368
IPR003618Transcription elongation factor S-II, central domainPFAMPF07500TFIIS_Mcoord: 510..590
e-value: 6.3E-7
score: 29.9
IPR036575Transcription elongation factor S-II, central domain superfamilySUPERFAMILY46942Elongation factor TFIIS domain 2coord: 506..590

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:2780929..2785496 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2316.1mRNA_P-fluviatile_contig14.2316.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig14 2776450..2790392 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig14.2316.1 ID=prot_P-fluviatile_contig14.2316.1|Name=mRNA_P-fluviatile_contig14.2316.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=598bp
MTTKRSSPWTASLMRTRTTSFRTRALSLPREAAAAGRRRAGARKSSSNGD
GEKGGGGGHGTKKPKRSRPSSPTPSDRGSGSDGGGSARHGGGGGGGGSGS
GMAAGQAKARALAAVRRFVASLPPVEYGRDEGWVASKEEAREAASKGGGG
GGGGGGSSGGGGGGRGGSGGGSSKRDRVAGGGGGRGDKGEKKPKKMKLSS
REEKQREEEERKQRLSRMKSSPEPIWKQHRRIKEETGKSGGGASGGGGAS
ASEADKKVSSSTPAAGGGGSREAQIQTGRKLTHRLSKASAEGKFNKPEVL
EVLRKLGELEPSLELLQQSGCGKAVANARKYFSGGQVKHNDKDVATAASN
LRTRWMNTLAGGGGKGGAPGTPRASAPSSSFAAAADKTTTPRDPDAVKQV
PSSASSVSNKKLSVEESFRGRTPKVETGSADGGGGGGGSESKGENGGKGS
PRGGGGTEGGRYGGAEREEDKAEGAAAMKEVKKEVKKEESAEAGASLGLV
AMKALEEPRRRAMGMLMSVLGTAAVAMERCKAIEEELHQSQGREINKEYL
RRLRTAVFSMEGPEGQRLRDKVMSEMVVPTDFVSKSCEELRALAGLI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017923TFIIS_N
IPR035441TFIIS/LEDGF_dom_sf
IPR003618TFIIS_cen_dom
IPR036575TFIIS_cen_dom_sf