mRNA_P-fluviatile_contig14.2316.1 (mRNA) Porterinema fluviatile SAG_2381
|
Overview
Homology
BLAST of mRNA_P-fluviatile_contig14.2316.1 vs. uniprot
Match: A0A6H5KKU8_9PHAE (TFIIS N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKU8_9PHAE) HSP 1 Score: 285 bits (730), Expect = 3.080e-76 Identity = 157/232 (67.67%), Postives = 174/232 (75.00%), Query Frame = 1
Query: 541 DGNESDEWSDQDEVHYLPAEVKAQFGQVVWAKWGSPPWPALVWDPRYLGKDKKARDVARKAYAALGKSHLVKFYDA-RNSFACVPFKSIKPFDVAELPIHLKSCTSAGKKETFKEDVQAAVEASRLTRVDRLATMHEVGRWTGRKKKRPNKTKRKADRGQERVARGEKQQTRGKSPAAAAATADAELPKKRGRGRPRKLPAQPPVKELDDDPPSPLSSAGAEYELPVPEANE 1233
DGNESDEWSD DEVHYLP EVKAQFGQVVWAK G+PPWPALVWDPR+LG DK AR VAR AYAA+GKSHLVKFY A +NSFACVP+K IKPFD ELP HLK+C A KK+T KEDVQ AVEAS LT+ +RLA +H VGRWTG KK + T +KA+ ++P AA+A E PKKRGRGRPRK P PVKELD DPPSP+SS G EYELPVPEA E
Sbjct: 170 DGNESDEWSDHDEVHYLPREVKAQFGQVVWAKMGNPPWPALVWDPRFLGNDKVARGVARMAYAAVGKSHLVKFYTAAKNSFACVPYKRIKPFDATELPTHLKACNGAKKKDTLKEDVQTAVEASLLTKSERLAEIHMVGRWTGNKKN--SSTPKKAN-----------NTATSRTPTAASA----EPPKKRGRGRPRKTPL--PVKELDADPPSPVSSGGVEYELPVPEAEE 382
BLAST of mRNA_P-fluviatile_contig14.2316.1 vs. uniprot
Match: A0A836CFN4_9STRA (PWWP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFN4_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 4.910e-8 Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 1
Query: 487 EEEGGAEDEGGRPGASEGDGNESDEWSDQDEVHYLPAEVKAQFGQVVWAKWGS-PPWPALVWDPRYLGKDKKARDVARKAYAALGKSHLVKFYDARNSFACV 789
EE+ G+ D PG DG+ + S +DEV +P E K +FG +VWAK G PPWPAL+WDPRY + ++AY +L K ++ N + +
Sbjct: 2 EEDDGSSDAAPSPGD---DGDVDNGESSEDEVSLMPQEYKDKFGDLVWAKMGRYPPWPALIWDPRYAPAGSR-----KQAYLSLRKKFFTVWFYGNNQYGFI 95
BLAST of mRNA_P-fluviatile_contig14.2316.1 vs. uniprot
Match: K3WLH8_GLOUD (PWWP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLH8_GLOUD) HSP 1 Score: 64.3 bits (155), Expect = 1.680e-6 Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 580 VHYLPAEVKAQFGQVVWAKW-GSPPWPALVWDPRYLGKDKKARDVARKAYAALGKSHLVKFYDARNSFACVPFKSIKPFD 816
V L EVKA+FGQ+VWAK G P WPAL+ DPRYL K + A K L +LV FY+A+N FA FK+++P+D
Sbjct: 284 VEALDPEVKAKFGQIVWAKMTGYPYWPALITDPRYLPP--KFQVTAMKD---LETKYLVYFYNAKN-FAATLFKNVEPWD 357 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig14.2316.1 >prot_P-fluviatile_contig14.2316.1 ID=prot_P-fluviatile_contig14.2316.1|Name=mRNA_P-fluviatile_contig14.2316.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=598bp MTTKRSSPWTASLMRTRTTSFRTRALSLPREAAAAGRRRAGARKSSSNGDback to top mRNA from alignment at P-fluviatile_contig14:2776450..2790392- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig14.2316.1 ID=mRNA_P-fluviatile_contig14.2316.1|Name=mRNA_P-fluviatile_contig14.2316.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=13943bp|location=Sequence derived from alignment at P-fluviatile_contig14:2776450..2790392- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig14:2776450..2790392- >mRNA_P-fluviatile_contig14.2316.1 ID=mRNA_P-fluviatile_contig14.2316.1|Name=mRNA_P-fluviatile_contig14.2316.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3588bp|location=Sequence derived from alignment at P-fluviatile_contig14:2776450..2790392- (Porterinema fluviatile SAG_2381)back to top |