prot_P-fluviatile_contig13.1973.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig13.1973.1
Unique Nameprot_P-fluviatile_contig13.1973.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length301
Homology
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: D8LT94_ECTSI (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT94_ECTSI)

HSP 1 Score: 553 bits (1426), Expect = 2.070e-198
Identity = 279/300 (93.00%), Postives = 292/300 (97.33%), Query Frame = 0
Query:    1 MSSLSPEKFASLHSRLMTILSADTSDDGVNSEVLSESFGEEYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNADELF 300
            M+SLS EKFASLH RLMTILSAD+SDDGVNSEVLSESFGEEYPLLVD+INSLLV+NRLQLSKGENDTMWYKLVQEEKAKKL GLTPEQ+MIYQVIEKAGNKGIWTRDIKTAT+VNQNT+TKTLK LEGRHL+KTAKSVTSKSKKLYMLYEL PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSM+EVKLIV+TLVYDGLLEEVRG+ASRFNRDAGDGPVYKMAP  EVVN FTEVPCGTCKVMKHCSE+GVVSPKTCVYLAEWLNLPN+DELF
Sbjct:    1 MTSLSQEKFASLHGRLMTILSADSSDDGVNSEVLSESFGEEYPLLVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNSDELF 300          
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: A0A7R9U7U3_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7U3_9STRA)

HSP 1 Score: 273 bits (699), Expect = 7.910e-88
Identity = 140/276 (50.72%), Postives = 190/276 (68.84%), Query Frame = 0
Query:   23 DTSDDGVNSEVLSESFGEEYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSA-SRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNAD 297
            D +D GV+ E+L   FG+EY  L D++N++L + R+ + +  +DT+ YKLV  EKA KL GLT EQ +IYQ I+KAGNKGIWTR I T T+V Q  LTKTLK+LE R LIK+ KSVTS+ KKLYML+E  PA EITGG WY++ EFD+EFV  +S +V +Y+K+ E+  L+DIA A++ +G SK+DLS D+V+ IV +L++DG +E V+    ++   D  +GP+Y+  P        TE PCG C V   C E GV+SP TCVY+  WL L + D
Sbjct:   30 DENDGGVSDELLQHEFGKEYGKLADVLNTMLEQRRVTILRAHDDTLVYKLVSAEKASKLQGLTREQELIYQEIKKAGNKGIWTRKITTETNVQQQVLTKTLKLLEQRQLIKSVKSVTSRRKKLYMLFEEVPATEITGGAWYSEGEFDHEFVSSMSQFVYTYIKQGESASLQDIAKAVRETGFSKVDLSTDDVQQIVESLIFDGRVERVQNPILTQMGLD--NGPLYRSKPKITTPQFVTENPCGICPVANQCCEGGVISPATCVYMNHWLELDSLD 303          
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: A0A2D4BDY6_PYTIN (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDY6_PYTIN)

HSP 1 Score: 233 bits (595), Expect = 3.120e-72
Identity = 121/272 (44.49%), Postives = 175/272 (64.34%), Query Frame = 0
Query:   26 DDGVNSEVLSESFGEEYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNAD 297
            D   ++EV     G EY  L  +IN+L+ E R++  +     + Y +V  E+A+++ GLT EQ ++ Q IE+AGNKG+WTRDIKT T++ Q  +TKTL+VLE R L+K+ KS++SK+KKLYML++L P+ EITGGPWY +QEFD+ F+  LS++V   +K      LK I   +  SGISK+ L  DE++ I+ TL+YDG +EEVR  A R    A     YK++      N  +E PCG C V   C E  V+SP++C+YL +WL+L + +
Sbjct:   27 DPLTDAEVREAFAGGEYERLPTVINALMGEGRIKXFQ-RGSVLSYGVVGAEEAERIKGLTIEQRLVLQEIERAGNKGVWTRDIKTHTNIPQQIVTKTLRVLESRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLKAITDKVHASGISKVALGPDEIRSIIQTLMYDGRVEEVR--AVRLTPGANHETKYKISQEISTFNALSETPCGVCPVFDQCQEGNVISPRSCLYLTKWLDLKDLE 295          
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: A0A067BY85_SAPPC (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BY85_SAPPC)

HSP 1 Score: 228 bits (582), Expect = 1.960e-70
Identity = 117/278 (42.09%), Postives = 186/278 (66.91%), Query Frame = 0
Query:   24 TSDDGVNSEVLSESFGEEYPLLVDIINSLLVENRLQ-LSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNADELF 300
            +S + +  +V+ +SFG++Y  L   IN L+ E+R++ L +G N  + Y+LV +E+++++ GL+ E   +   IEK+GNKG+WTRDIK  T++ + T+ K ++ LE RHL+K  KS++ K+KKLYMLY+L P+++ITGGPWY +QEFD++F+  LS++V  +++ +    L+ I   +  SGI+K+ L  DE+  IV TL+YD  +EEVR +A   N +  D   YK+     V +  +E PCG C V + C++  +VSP TCVYL +W+N+  AD+LF
Sbjct:   13 SSTEPIGDDVVRKSFGDQYAKLPVCINRLMGESRIKILMQGSN--VLYQLVTKEESERMQGLSGEHRAVLHEIEKSGNKGVWTRDIKMQTNLPEMTIRKIIRTLESRHLVKAVKSISQKNKKLYMLYDLVPSRDITGGPWYNEQEFDHDFIDTLSTFVCQFIRAKGVVTLQQITDKVHESGIAKVSLGPDEMMSIVNTLIYDERIEEVR-TARLANGEMRDVS-YKICRDVSVFDGLSEAPCGVCPVFEQCADGNIVSPATCVYLTKWMNV--ADDLF 284          
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: A0A4D9CUF8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUF8_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.410e-69
Identity = 122/270 (45.19%), Postives = 175/270 (64.81%), Query Frame = 0
Query:   27 DGVNSEVLSESFGEEYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPP-LKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPN 295
            +G+ +E L E F E Y  LV IINS L EN ++  K E++ + Y+ V    A+K+  L  EQL++YQV+EKAGNKGIW +DI++ TS+ Q  L K LK LE R L+K+  S++SK++KLY+LY+L PAKEITGGPWYT+ EFD+EF++ LS  +  ++K+Q  PP L  I   ++ SG+SK++L+  EV+LI+ +L YD  +E V+ S       +   P YK++     +N FT+ PCG C V   C E G +SP  C Y   WL++ N
Sbjct:  375 EGLRNEQLREHFTERYLHLVPIINSCLAENLIRCMKTESNELVYQAVDPNLAEKMRNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLVKSTSSISSKTRKLYLLYDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYLFIKQQRKPPSLGIIVDYVRNSGVSKVELAPGEVQLIINSLAYDMKIEPVQNSLVGALPSSDGTPCYKISRQVTPLNHFTDFPCGRCPVQAQCEEGGEISPANCRYFNVWLDVNN 644          
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: A0A0W8DBA8_PHYNI (DNA-directed RNA polymerase III subunit RPC6 n=24 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DBA8_PHYNI)

HSP 1 Score: 226 bits (575), Expect = 2.760e-69
Identity = 113/259 (43.63%), Postives = 168/259 (64.86%), Query Frame = 0
Query:   39 GEEYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNAD 297
            G  Y  L D+IN+LL E ++++ K +   + Y +V  E+A+++ GLT EQ ++ Q IE+AGNKGIWTRDIK+ T++ Q  +TKTL++LE R L+K+ KS++SK+KKLYML++L P+ EITGGPWY +QEFD+ F+  LS++V   +K      L  I   +  SGISK+ L  +E++ I+ TL+YDG +EEVR ++            YK++      N  +E PCG C V   C E  V+SP++C+Y+ +WL L   D
Sbjct:   41 GGGYEQLPDVINALLTEGKIKIFK-KGSVLSYGIVDAEEAERIRGLTLEQRLVLQEIERAGNKGIWTRDIKSHTNIPQQIVTKTLRLLETRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVRSASHEVK--------YKVSQQITTFNYLSETPCGVCPVFDQCQEGNVISPRSCLYMTKWLGLKELD 290          
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: A0A1V9ZF30_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZF30_9STRA)

HSP 1 Score: 224 bits (570), Expect = 1.710e-68
Identity = 117/287 (40.77%), Postives = 183/287 (63.76%), Query Frame = 0
Query:   24 TSDDGVNSEVLSESFGEEYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLT----------PEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNADELF 300
            +S + V+  V+ +SFGE+Y  L   IN L+ E+R+++   +  T+ Y+LV +E+A+++ GL+           E   +   IEKAGNKG+WTRDIK+ T++ + T+ K ++VLE RHL+K  KS++ K+KKLYMLY+L P+++ITGGPWY +QEFD++F+  LS++V  +++ +    L+ I   +  SGI+K+ L  +E+  IV TL+YD  +EEVR   +R          YK+     V +  +E PCG C V   C++  +VSP TCVYL +W+N+  AD+LF
Sbjct:   13 SSTEPVSDNVIKKSFGEQYAKLPSCINRLVNESRVKILM-QGTTLMYQLVPKEEAERMQGLSYVAVNSNYHWGEHRAVLHEIEKAGNKGVWTRDIKSQTNLAEVTIRKIIRVLETRHLVKAVKSISQKNKKLYMLYDLVPSRDITGGPWYNEQEFDHDFIDTLSNFVCQFIRAKGVVTLQQITDKVHESGIAKVSLGPEEMMSIVNTLIYDERIEEVR--TARLANGEMREVSYKICRDVSVFDALSEAPCGICPVFDQCADGNIVSPATCVYLTKWMNV--ADDLF 294          
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: F0Y1C8_AURAN (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1C8_AURAN)

HSP 1 Score: 222 bits (565), Expect = 1.060e-67
Identity = 131/292 (44.86%), Postives = 184/292 (63.01%), Query Frame = 0
Query:   15 RLMTILSADTSDDGVNSEVLSESF-GEEYPLLVDIINSLLVENRLQLSKGEN-DTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRG--SASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVM---KHCSENGVVSPKTCVYLAEWLNLPNADEL 299
            + + +L A   D GV++E L   F GE Y  L+ +IN LL ENRL+L K E    + Y+L  + +A+KL+ LT EQL++ QV+E+A N G+W RDIK ATS+ Q TL K LKVLE R L+KT KSV  K+KKLYM Y+L P +E++GGPWYTDQEFD+EFV  +   V+ YV+  +T  L +I  A++ SGI+ + LS+ +VKL++ TL+ D  LEE     +AS+ +R       YK+A  A  V    EVP G        ++C++ G  +P +C YL +WL   + DEL
Sbjct:    6 KFLELLGAAQGDAGVSNETLQRKFPGESYAALLPVINELLAENRLELLKEEGKQDLTYRLRDKAQAEKLSELTNEQLLVLQVVERAENAGVWLRDIKNATSMQQQTLNKALKVLESRKLVKTVKSVQQKTKKLYMAYDLVPTREVSGGPWYTDQEFDHEFVGAIKKIVVKYVQSVQTSTLDEIHGALERSGIATVPLSVADVKLVIDTLLCDSKLEEFTAVTAASKASR-------YKIAKPAVDVAWVGEVPAGCVPEAPGRRYCAD-GRHAPASCQYLQKWLEQDDDDEL 289          
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: A0A024U424_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024U424_9STRA)

HSP 1 Score: 221 bits (562), Expect = 1.960e-67
Identity = 108/270 (40.00%), Postives = 175/270 (64.81%), Query Frame = 0
Query:   24 TSDDGVNSEVLSESFGEEYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNL 293
            +S D ++   + +SF  EY  L  +IN L+ + R+++ + +N  + Y LV +E+A+++ GLT EQ  +   IEKAGNKGIWTRDIK  T++ +  + KT+++LE RHL+K  KS++ K+KKLYML++L P+++ITGGPWY +QEFD++F+  L ++V  +++ +    LK I   +  SGI+K+ L  DE+  I+ TL+YD  +EEVR  A+R          YK++      +  ++ PCG C V   C++  ++SP TC+YL +WL++
Sbjct:   13 SSTDAISDAQVRDSFRAEYDKLPGVINELVTDGRIKIFQ-QNGNLMYGLVAKEEAERMRGLTVEQRGVLHEIEKAGNKGIWTRDIKAKTNIPEVIIRKTIRLLETRHLVKAVKSISQKNKKLYMLFDLVPSRDITGGPWYNEQEFDHDFIDTLRNFVCQFIRAKGIVTLKQITDKVHESGIAKVSLGPDEMMSILNTLIYDDRVEEVR--AARLASGEWREVSYKVSREVTDFDTLSDTPCGVCPVFDQCADGNIISPATCIYLTKWLDI 279          
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: K3X6G1_GLOUD (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X6G1_GLOUD)

HSP 1 Score: 221 bits (562), Expect = 2.660e-67
Identity = 109/257 (42.41%), Postives = 168/257 (65.37%), Query Frame = 0
Query:   41 EYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNAD 297
            EY  L  ++N L+ E ++++ +  N  + Y ++  E+A+++ GLT EQ ++ Q IE+AGNKGIWTRDIKT T++ Q  +TKTL++LE R L+K+ KS++SK+KKLYML++L P+ EITGGPWY +QEFD+ F+  LS++V   +K   T  L  I   +  SGISK+ L  +E++ I+ TL+YDG +EEVR    R          YK++      N  +E PCG C V   C E  ++SP++C+Y+++W+ L + +
Sbjct:   39 EYEKLPSVLNVLMSEGKIKIFQKGN-VLSYGVIGAEEAERIRGLTLEQRLVLQEIERAGNKGIWTRDIKTHTNIPQQIVTKTLRLLETRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGTSTLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVR--TVRLTPGVSHETKYKVSHDISTFNYLSETPCGVCPVFNQCQEGNIISPRSCLYISKWVELKDLE 292          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT94_ECTSI2.070e-19893.00DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A7R9U7U3_9STRA7.910e-8850.72DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A2D4BDY6_PYTIN3.120e-7244.49DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A067BY85_SAPPC1.960e-7042.09DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
A0A4D9CUF8_9STRA1.410e-6945.19Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0W8DBA8_PHYNI2.760e-6943.63DNA-directed RNA polymerase III subunit RPC6 n=24 ... [more]
A0A1V9ZF30_9STRA1.710e-6840.77DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]
F0Y1C8_AURAN1.060e-6744.86DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A024U424_9STRA1.960e-6740.00DNA-directed RNA polymerase III subunit RPC6 n=8 T... [more]
K3X6G1_GLOUD2.660e-6742.41DNA-directed RNA polymerase III subunit RPC6 n=2 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 58..143
e-value: 8.2E-27
score: 94.7
IPR007832RNA polymerase Rpc34PIRSFPIRSF028763RNAP3_C34/C39coord: 7..294
e-value: 6.1E-69
score: 230.5
IPR007832RNA polymerase Rpc34PFAMPF05158RNA_pol_Rpc34coord: 11..192
e-value: 2.3E-52
score: 178.5
IPR016049RNA polymerase Rpc34-likePANTHERPTHR12780RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATEDcoord: 37..291
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 75..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:3262974..3268610 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1973.1mRNA_P-fluviatile_contig13.1973.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig13 3262974..3269144 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig13.1973.1 ID=prot_P-fluviatile_contig13.1973.1|Name=mRNA_P-fluviatile_contig13.1973.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=301bp
MSSLSPEKFASLHSRLMTILSADTSDDGVNSEVLSESFGEEYPLLVDIIN
SLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGN
KGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYE
LAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIK
VSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMA
PTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNADELF
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR007832RNA_pol_Rpc34
IPR016049RNA_pol_Rpc34-like
IPR036390WH_DNA-bd_sf