mRNA_P-fluviatile_contig13.1973.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: D8LT94_ECTSI (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT94_ECTSI) HSP 1 Score: 553 bits (1425), Expect = 2.900e-195 Identity = 279/300 (93.00%), Postives = 292/300 (97.33%), Query Frame = 1
Query: 1 MSSLSPEKFASLHSRLMTILSADTSDDGVNSEVLSESFGEEYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNADELF 900
M+SLS EKFASLH RLMTILSAD+SDDGVNSEVLSESFGEEYPLLVD+INSLLV+NRLQLSKGENDTMWYKLVQEEKAKKL GLTPEQ+MIYQVIEKAGNKGIWTRDIKTAT+VNQNT+TKTLK LEGRHL+KTAKSVTSKSKKLYMLYEL PAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSM+EVKLIV+TLVYDGLLEEVRG+ASRFNRDAGDGPVYKMAP EVVN FTEVPCGTCKVMKHCSE+GVVSPKTCVYLAEWLNLPN+DELF
Sbjct: 1 MTSLSQEKFASLHGRLMTILSADSSDDGVNSEVLSESFGEEYPLLVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNLPNSDELF 300
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: A0A7R9U7U3_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7U3_9STRA) HSP 1 Score: 273 bits (698), Expect = 3.720e-85 Identity = 140/276 (50.72%), Postives = 190/276 (68.84%), Query Frame = 1
Query: 67 DTSDDGVNSEVLSESFGEEYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSA-SRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNAD 891
D +D GV+ E+L FG+EY L D++N++L + R+ + + +DT+ YKLV EKA KL GLT EQ +IYQ I+KAGNKGIWTR I T T+V Q LTKTLK+LE R LIK+ KSVTS+ KKLYML+E PA EITGG WY++ EFD+EFV +S +V +Y+K+ E+ L+DIA A++ +G SK+DLS D+V+ IV +L++DG +E V+ ++ D +GP+Y+ P TE PCG C V C E GV+SP TCVY+ WL L + D
Sbjct: 30 DENDGGVSDELLQHEFGKEYGKLADVLNTMLEQRRVTILRAHDDTLVYKLVSAEKASKLQGLTREQELIYQEIKKAGNKGIWTRKITTETNVQQQVLTKTLKLLEQRQLIKSVKSVTSRRKKLYMLFEEVPATEITGGAWYSEGEFDHEFVSSMSQFVYTYIKQGESASLQDIAKAVRETGFSKVDLSTDDVQQIVESLIFDGRVERVQNPILTQMGLD--NGPLYRSKPKITTPQFVTENPCGICPVANQCCEGGVISPATCVYMNHWLELDSLD 303
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: A0A2D4BDY6_PYTIN (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDY6_PYTIN) HSP 1 Score: 233 bits (594), Expect = 1.010e-69 Identity = 121/272 (44.49%), Postives = 175/272 (64.34%), Query Frame = 1
Query: 76 DDGVNSEVLSESFGEEYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNAD 891
D ++EV G EY L +IN+L+ E R++ + + Y +V E+A+++ GLT EQ ++ Q IE+AGNKG+WTRDIKT T++ Q +TKTL+VLE R L+K+ KS++SK+KKLYML++L P+ EITGGPWY +QEFD+ F+ LS++V +K LK I + SGISK+ L DE++ I+ TL+YDG +EEVR A R A YK++ N +E PCG C V C E V+SP++C+YL +WL+L + +
Sbjct: 27 DPLTDAEVREAFAGGEYERLPTVINALMGEGRIKXFQ-RGSVLSYGVVGAEEAERIKGLTIEQRLVLQEIERAGNKGVWTRDIKTHTNIPQQIVTKTLRVLESRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLKAITDKVHASGISKVALGPDEIRSIIQTLMYDGRVEEVR--AVRLTPGANHETKYKISQEISTFNALSETPCGVCPVFDQCQEGNVISPRSCLYLTKWLDLKDLE 295
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: A0A067BY85_SAPPC (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BY85_SAPPC) HSP 1 Score: 228 bits (581), Expect = 5.990e-68 Identity = 117/278 (42.09%), Postives = 186/278 (66.91%), Query Frame = 1
Query: 70 TSDDGVNSEVLSESFGEEYPLLVDIINSLLVENRLQ-LSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNADELF 900
+S + + +V+ +SFG++Y L IN L+ E+R++ L +G N + Y+LV +E+++++ GL+ E + IEK+GNKG+WTRDIK T++ + T+ K ++ LE RHL+K KS++ K+KKLYMLY+L P+++ITGGPWY +QEFD++F+ LS++V +++ + L+ I + SGI+K+ L DE+ IV TL+YD +EEVR +A N + D YK+ V + +E PCG C V + C++ +VSP TCVYL +W+N+ AD+LF
Sbjct: 13 SSTEPIGDDVVRKSFGDQYAKLPVCINRLMGESRIKILMQGSN--VLYQLVTKEESERMQGLSGEHRAVLHEIEKSGNKGVWTRDIKMQTNLPEMTIRKIIRTLESRHLVKAVKSISQKNKKLYMLYDLVPSRDITGGPWYNEQEFDHDFIDTLSTFVCQFIRAKGVVTLQQITDKVHESGIAKVSLGPDEMMSIVNTLIYDERIEEVR-TARLANGEMRDVS-YKICRDVSVFDGLSEAPCGVCPVFEQCADGNIVSPATCVYLTKWMNV--ADDLF 284
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: A0A4D9CUF8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUF8_9STRA) HSP 1 Score: 237 bits (604), Expect = 3.380e-67 Identity = 122/270 (45.19%), Postives = 175/270 (64.81%), Query Frame = 1
Query: 79 DGVNSEVLSESFGEEYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPP-LKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPN 885
+G+ +E L E F E Y LV IINS L EN ++ K E++ + Y+ V A+K+ L EQL++YQV+EKAGNKGIW +DI++ TS+ Q L K LK LE R L+K+ S++SK++KLY+LY+L PAKEITGGPWYT+ EFD+EF++ LS + ++K+Q PP L I ++ SG+SK++L+ EV+LI+ +L YD +E V+ S + P YK++ +N FT+ PCG C V C E G +SP C Y WL++ N
Sbjct: 375 EGLRNEQLREHFTERYLHLVPIINSCLAENLIRCMKTESNELVYQAVDPNLAEKMRNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLVKSTSSISSKTRKLYLLYDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYLFIKQQRKPPSLGIIVDYVRNSGVSKVELAPGEVQLIINSLAYDMKIEPVQNSLVGALPSSDGTPCYKISRQVTPLNHFTDFPCGRCPVQAQCEEGGEISPANCRYFNVWLDVNN 644
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: A0A0W8DBA8_PHYNI (DNA-directed RNA polymerase III subunit RPC6 n=24 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DBA8_PHYNI) HSP 1 Score: 225 bits (574), Expect = 8.170e-67 Identity = 113/259 (43.63%), Postives = 168/259 (64.86%), Query Frame = 1
Query: 115 GEEYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNAD 891
G Y L D+IN+LL E ++++ K + + Y +V E+A+++ GLT EQ ++ Q IE+AGNKGIWTRDIK+ T++ Q +TKTL++LE R L+K+ KS++SK+KKLYML++L P+ EITGGPWY +QEFD+ F+ LS++V +K L I + SGISK+ L +E++ I+ TL+YDG +EEVR ++ YK++ N +E PCG C V C E V+SP++C+Y+ +WL L D
Sbjct: 41 GGGYEQLPDVINALLTEGKIKIFK-KGSVLSYGIVDAEEAERIRGLTLEQRLVLQEIERAGNKGIWTRDIKSHTNIPQQIVTKTLRLLETRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVRSASHEVK--------YKVSQQITTFNYLSETPCGVCPVFDQCQEGNVISPRSCLYMTKWLGLKELD 290
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: A0A1V9ZF30_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZF30_9STRA) HSP 1 Score: 223 bits (569), Expect = 4.960e-66 Identity = 117/287 (40.77%), Postives = 183/287 (63.76%), Query Frame = 1
Query: 70 TSDDGVNSEVLSESFGEEYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLT----------PEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNADELF 900
+S + V+ V+ +SFGE+Y L IN L+ E+R+++ + T+ Y+LV +E+A+++ GL+ E + IEKAGNKG+WTRDIK+ T++ + T+ K ++VLE RHL+K KS++ K+KKLYMLY+L P+++ITGGPWY +QEFD++F+ LS++V +++ + L+ I + SGI+K+ L +E+ IV TL+YD +EEVR +R YK+ V + +E PCG C V C++ +VSP TCVYL +W+N+ AD+LF
Sbjct: 13 SSTEPVSDNVIKKSFGEQYAKLPSCINRLVNESRVKILM-QGTTLMYQLVPKEEAERMQGLSYVAVNSNYHWGEHRAVLHEIEKAGNKGVWTRDIKSQTNLAEVTIRKIIRVLETRHLVKAVKSISQKNKKLYMLYDLVPSRDITGGPWYNEQEFDHDFIDTLSNFVCQFIRAKGVVTLQQITDKVHESGIAKVSLGPEEMMSIVNTLIYDERIEEVR--TARLANGEMREVSYKICRDVSVFDALSEAPCGICPVFDQCADGNIVSPATCVYLTKWMNV--ADDLF 294
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: A0A024U424_9STRA (DNA-directed RNA polymerase III subunit RPC6 n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024U424_9STRA) HSP 1 Score: 221 bits (562), Expect = 3.890e-65 Identity = 108/270 (40.00%), Postives = 175/270 (64.81%), Query Frame = 1
Query: 70 TSDDGVNSEVLSESFGEEYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNL 879
+S D ++ + +SF EY L +IN L+ + R+++ + +N + Y LV +E+A+++ GLT EQ + IEKAGNKGIWTRDIK T++ + + KT+++LE RHL+K KS++ K+KKLYML++L P+++ITGGPWY +QEFD++F+ L ++V +++ + LK I + SGI+K+ L DE+ I+ TL+YD +EEVR A+R YK++ + ++ PCG C V C++ ++SP TC+YL +WL++
Sbjct: 13 SSTDAISDAQVRDSFRAEYDKLPGVINELVTDGRIKIFQ-QNGNLMYGLVAKEEAERMRGLTVEQRGVLHEIEKAGNKGIWTRDIKAKTNIPEVIIRKTIRLLETRHLVKAVKSISQKNKKLYMLFDLVPSRDITGGPWYNEQEFDHDFIDTLRNFVCQFIRAKGIVTLKQITDKVHESGIAKVSLGPDEMMSILNTLIYDDRVEEVR--AARLASGEWREVSYKVSREVTDFDTLSDTPCGVCPVFDQCADGNIISPATCIYLTKWLDI 279
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: F0Y1C8_AURAN (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1C8_AURAN) HSP 1 Score: 221 bits (563), Expect = 4.230e-65 Identity = 131/292 (44.86%), Postives = 184/292 (63.01%), Query Frame = 1
Query: 43 RLMTILSADTSDDGVNSEVLSESF-GEEYPLLVDIINSLLVENRLQLSKGEN-DTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRG--SASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVM---KHCSENGVVSPKTCVYLAEWLNLPNADEL 897
+ + +L A D GV++E L F GE Y L+ +IN LL ENRL+L K E + Y+L + +A+KL+ LT EQL++ QV+E+A N G+W RDIK ATS+ Q TL K LKVLE R L+KT KSV K+KKLYM Y+L P +E++GGPWYTDQEFD+EFV + V+ YV+ +T L +I A++ SGI+ + LS+ +VKL++ TL+ D LEE +AS+ +R YK+A A V EVP G ++C++ G +P +C YL +WL + DEL
Sbjct: 6 KFLELLGAAQGDAGVSNETLQRKFPGESYAALLPVINELLAENRLELLKEEGKQDLTYRLRDKAQAEKLSELTNEQLLVLQVVERAENAGVWLRDIKNATSMQQQTLNKALKVLESRKLVKTVKSVQQKTKKLYMAYDLVPTREVSGGPWYTDQEFDHEFVGAIKKIVVKYVQSVQTSTLDEIHGALERSGIATVPLSVADVKLVIDTLLCDSKLEEFTAVTAASKASR-------YKIAKPAVDVAWVGEVPAGCVPEAPGRRYCAD-GRHAPASCQYLQKWLEQDDDDEL 289
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Match: K3X6G1_GLOUD (DNA-directed RNA polymerase III subunit RPC6 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X6G1_GLOUD) HSP 1 Score: 220 bits (561), Expect = 7.420e-65 Identity = 109/257 (42.41%), Postives = 168/257 (65.37%), Query Frame = 1
Query: 121 EYPLLVDIINSLLVENRLQLSKGENDTMWYKLVQEEKAKKLTGLTPEQLMIYQVIEKAGNKGIWTRDIKTATSVNQNTLTKTLKVLEGRHLIKTAKSVTSKSKKLYMLYELAPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKVSGISKIDLSMDEVKLIVTTLVYDGLLEEVRGSASRFNRDAGDGPVYKMAPTAEVVNPFTEVPCGTCKVMKHCSENGVVSPKTCVYLAEWLNLPNAD 891
EY L ++N L+ E ++++ + N + Y ++ E+A+++ GLT EQ ++ Q IE+AGNKGIWTRDIKT T++ Q +TKTL++LE R L+K+ KS++SK+KKLYML++L P+ EITGGPWY +QEFD+ F+ LS++V +K T L I + SGISK+ L +E++ I+ TL+YDG +EEVR R YK++ N +E PCG C V C E ++SP++C+Y+++W+ L + +
Sbjct: 39 EYEKLPSVLNVLMSEGKIKIFQKGN-VLSYGVIGAEEAERIRGLTLEQRLVLQEIERAGNKGIWTRDIKTHTNIPQQIVTKTLRLLETRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGTSTLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVR--TVRLTPGVSHETKYKVSHDISTFNYLSETPCGVCPVFNQCQEGNIISPRSCLYISKWVELKDLE 292 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig13.1973.1 >prot_P-fluviatile_contig13.1973.1 ID=prot_P-fluviatile_contig13.1973.1|Name=mRNA_P-fluviatile_contig13.1973.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=301bp MSSLSPEKFASLHSRLMTILSADTSDDGVNSEVLSESFGEEYPLLVDIINback to top mRNA from alignment at P-fluviatile_contig13:3262974..3269144+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig13.1973.1 ID=mRNA_P-fluviatile_contig13.1973.1|Name=mRNA_P-fluviatile_contig13.1973.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6171bp|location=Sequence derived from alignment at P-fluviatile_contig13:3262974..3269144+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig13:3262974..3269144+ >mRNA_P-fluviatile_contig13.1973.1 ID=mRNA_P-fluviatile_contig13.1973.1|Name=mRNA_P-fluviatile_contig13.1973.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1806bp|location=Sequence derived from alignment at P-fluviatile_contig13:3262974..3269144+ (Porterinema fluviatile SAG_2381)back to top |