prot_P-fluviatile_contig13.1895.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig13.1895.1
Unique Nameprot_P-fluviatile_contig13.1895.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length112
Homology
BLAST of mRNA_P-fluviatile_contig13.1895.1 vs. uniprot
Match: D7FV36_ECTSI (Mediator of RNA polymerase II transcription subunit 21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV36_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 2.640e-43
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 0
Query:    1 MEEEKDAISVMQDSVDQLALSMFDSLRLIPFSEEVEGGARGAIPHR----GNPTAAPLRRAVVTNAAWASQVQSLAEGVLKQAKALEHLIDVLPGAELREDQQME 101
            ME +KDA+S MQ+SVDQLALSMFDSLRLIPFSEEV+GGARG  P +    G P AAPLRRAV TNAAWA  VQSLA+GVLKQA+AL+ LIDVLPGAELREDQQME
Sbjct:   21 MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVAPLQQQQPGQPDAAPLRRAVTTNAAWADTVQSLADGVLKQARALDGLIDVLPGAELREDQQME 125          
BLAST of mRNA_P-fluviatile_contig13.1895.1 vs. uniprot
Match: A0A835Z332_9STRA (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z332_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.340e-6
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 0
Query:    3 EEKDAISVMQDSVDQLALSMFDSLRLIP-------FSEE--VEGGARGAIPHRGNPTAAPLRRAVVTNAAWASQVQSLAEGVLKQAKALEHLIDVLPGAELREDQQMEARK 104
            +++D +SVMQD VDQLAL+MF+S+R +P       F+ E  V  G   A    G                W   V +L+  V+ +A+AL+++I+ LPG +  E QQ++  K
Sbjct:   20 QDQDQVSVMQDKVDQLALAMFESIRSLPDPAADPSFAPEFVVSAGQSDAQQQHGQQ--------------WIDAVAALSARVVAEARALDNMIETLPGMDKTEAQQLQELK 116          
BLAST of mRNA_P-fluviatile_contig13.1895.1 vs. uniprot
Match: K3X2M6_GLOUD (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2M6_GLOUD)

HSP 1 Score: 52.8 bits (125), Expect = 3.090e-6
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 0
Query:    6 DAISVMQDSVDQLALSMFDSLRLIPFSEEVEGGARGAIPHRGNPTAAPLRRAVVTNAAWASQVQSLAEGVLKQAKALEHLIDVLPGAELREDQQME 101
            D +S++Q+SVD++ALSMF++LRL+P S   EG            TAA +R              SLA  VL+  K  + LID LPG E  E +Q+E
Sbjct:   33 DKVSMLQESVDKMALSMFNALRLLPASTGDEGSKEE--------TAAAIR--------------SLANDVLRMVKETDALIDDLPGLEKTESEQLE 106          
BLAST of mRNA_P-fluviatile_contig13.1895.1 vs. uniprot
Match: A0A5D6YEG9_9STRA (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEG9_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 7.610e-5
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 0
Query:    6 DAISVMQDSVDQLALSMFDSLRLIPFSEEVEGGARGAIPHRGNPTAAPLRRAVVTNAAWASQVQSLAEGVLKQAKALEHLIDVLPGAELREDQQME 101
            D +S++Q+SVD++ALSMF++LRL+P    V  G R                     A  A+ ++SLA+ VL+  K  + LID LPG +  E  Q+E
Sbjct:   26 DKVSLLQESVDKMALSMFNALRLLP----VGSGDR---------------------AETATAIRSLADDVLRMVKETDALIDDLPGLDKTESDQLE 96          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1895.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FV36_ECTSI2.640e-4378.10Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z332_9STRA1.340e-634.23Mediator of RNA polymerase II transcription subuni... [more]
K3X2M6_GLOUD3.090e-639.58Mediator of RNA polymerase II transcription subuni... [more]
A0A5D6YEG9_9STRA7.610e-536.46Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021384Mediator complex, subunit Med21PFAMPF11221Med21coord: 6..101
e-value: 3.4E-14
score: 53.3
IPR021384Mediator complex, subunit Med21PANTHERPTHR13381RNA POLYMERASE II HOLOENZYME COMPONENT SRB7coord: 6..101
NoneNo IPR availableGENE3D1.20.58.470coord: 5..109
e-value: 3.2E-8
score: 35.6
NoneNo IPR availablePANTHERPTHR13381:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 21coord: 6..101
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 6..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2676658..2676993 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1895.1mRNA_P-fluviatile_contig13.1895.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig13 2676658..2681398 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig13.1895.1 ID=prot_P-fluviatile_contig13.1895.1|Name=mRNA_P-fluviatile_contig13.1895.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=112bp
MEEEKDAISVMQDSVDQLALSMFDSLRLIPFSEEVEGGARGAIPHRGNPT
AAPLRRAVVTNAAWASQVQSLAEGVLKQAKALEHLIDVLPGAELREDQQM
EARKTEETTRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021384Mediator_Med21
IPR037212Med7/Med21-like