mRNA_P-fluviatile_contig13.1895.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1895.1
Unique NamemRNA_P-fluviatile_contig13.1895.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1895.1 vs. uniprot
Match: D7FV36_ECTSI (Mediator of RNA polymerase II transcription subunit 21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV36_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.140e-42
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:    1 MEEEKDAISVMQDSVDQLALSMFDSLRLIPFSEEVEGGARGAIPHR----GNPTAAPLRRAVVTNAAWASQVQSLAEGVLKQAKALEHLIDVLPGAELREDQQME 303
            ME +KDA+S MQ+SVDQLALSMFDSLRLIPFSEEV+GGARG  P +    G P AAPLRRAV TNAAWA  VQSLA+GVLKQA+AL+ LIDVLPGAELREDQQME
Sbjct:   21 MEVDKDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVAPLQQQQPGQPDAAPLRRAVTTNAAWADTVQSLADGVLKQARALDGLIDVLPGAELREDQQME 125
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BLAST of mRNA_P-fluviatile_contig13.1895.1 vs. uniprot
Match: A0A835Z332_9STRA (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z332_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.740e-6
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 1 
Query:    7 EEKDAISVMQDSVDQLALSMFDSLRLIP-------FSEE--VEGGARGAIPHRGNPTAAPLRRAVVTNAAWASQVQSLAEGVLKQAKALEHLIDVLPGAELREDQQMEARK 312
            +++D +SVMQD VDQLAL+MF+S+R +P       F+ E  V  G   A    G                W   V +L+  V+ +A+AL+++I+ LPG +  E QQ++  K
Sbjct:   20 QDQDQVSVMQDKVDQLALAMFESIRSLPDPAADPSFAPEFVVSAGQSDAQQQHGQQ--------------WIDAVAALSARVVAEARALDNMIETLPGMDKTEAQQLQELK 116
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BLAST of mRNA_P-fluviatile_contig13.1895.1 vs. uniprot
Match: K3X2M6_GLOUD (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2M6_GLOUD)

HSP 1 Score: 52.8 bits (125), Expect = 8.470e-6
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:   16 DAISVMQDSVDQLALSMFDSLRLIPFSEEVEGGARGAIPHRGNPTAAPLRRAVVTNAAWASQVQSLAEGVLKQAKALEHLIDVLPGAELREDQQME 303
            D +S++Q+SVD++ALSMF++LRL+P S   EG            TAA +R              SLA  VL+  K  + LID LPG E  E +Q+E
Sbjct:   33 DKVSMLQESVDKMALSMFNALRLLPASTGDEGSKEE--------TAAAIR--------------SLANDVLRMVKETDALIDDLPGLEKTESEQLE 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FV36_ECTSI1.140e-4278.10Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z332_9STRA3.740e-634.23Mediator of RNA polymerase II transcription subuni... [more]
K3X2M6_GLOUD8.470e-639.58Mediator of RNA polymerase II transcription subuni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2676658..2681398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMediator complex, subunit Med21
Ec32 orthologEc-12_005030.1
Exons2
Model size452
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1895.1prot_P-fluviatile_contig13.1895.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2676658..2676993 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.631961-CDS-P-fluviatile_contig13:2676657..26769931622815578.631961-CDS-P-fluviatile_contig13:2676657..2676993Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2676658..2676993 +
1693562321.5244725-CDS-P-fluviatile_contig13:2676657..26769931693562321.5244725-CDS-P-fluviatile_contig13:2676657..2676993Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2676658..2676993 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.6422343-UTR-P-fluviatile_contig13:2676993..26770001622815578.6422343-UTR-P-fluviatile_contig13:2676993..2677000Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2676994..2677000 +
1693562321.5351088-UTR-P-fluviatile_contig13:2676993..26770001693562321.5351088-UTR-P-fluviatile_contig13:2676993..2677000Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2676994..2677000 +
1622815578.6533103-UTR-P-fluviatile_contig13:2681289..26813981622815578.6533103-UTR-P-fluviatile_contig13:2681289..2681398Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2681290..2681398 +
1693562321.54432-UTR-P-fluviatile_contig13:2681289..26813981693562321.54432-UTR-P-fluviatile_contig13:2681289..2681398Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2681290..2681398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1895.1

>prot_P-fluviatile_contig13.1895.1 ID=prot_P-fluviatile_contig13.1895.1|Name=mRNA_P-fluviatile_contig13.1895.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=112bp
MEEEKDAISVMQDSVDQLALSMFDSLRLIPFSEEVEGGARGAIPHRGNPT
AAPLRRAVVTNAAWASQVQSLAEGVLKQAKALEHLIDVLPGAELREDQQM
EARKTEETTRR*
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mRNA from alignment at P-fluviatile_contig13:2676658..2681398+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1895.1 ID=mRNA_P-fluviatile_contig13.1895.1|Name=mRNA_P-fluviatile_contig13.1895.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4741bp|location=Sequence derived from alignment at P-fluviatile_contig13:2676658..2681398+ (Porterinema fluviatile SAG_2381)
ATGGAGGAGGAGAAAGACGCCATCTCTGTTATGCAAGATTCTGTGGACCA
GCTTGCGCTCAGCATGTTCGATTCTCTTCGGCTCATTCCTTTTTCAGAAG
AAGTCGAGGGGGGCGCAAGAGGCGCTATACCACATCGAGGAAACCCAACA
GCAGCTCCGCTACGGCGGGCGGTAGTCACAAATGCTGCTTGGGCAAGCCA
GGTACAATCGCTGGCTGAGGGAGTGCTCAAGCAAGCGAAAGCTTTGGAAC
ACCTGATCGATGTGCTGCCGGGCGCGGAGCTGCGAGAAGACCAGCAAATG
GAGGCGAGAAAAACAGAGGAGACCACACGGCGATGATCCATGAGTTTCAG
ACATGCCGTAGATCCCATAAGATACCACACACATAAATACCACACCCCTA
CGCCCACGTAATAAGCGAGAGGGGGGTGATAATGGGTTGCTTTGCCTCAT
TGTCTTGTCATACCTTTCGCTTCGTTAGGTGCTAAAAATATGAGACCGAT
TCTTCGTTCCAGGATGGGACCCCAACGGTAAGGGGGAACCAGGCAGGATA
GGGTACGGACGATTGGAGGTAAATGAGTGAGCGGAGAGGGGTTTTTGATG
TGAAGACATTACACACAACACACACACCCCGGTGAAAGAATGACAAAATA
CCACCCGCGGTGGTCTTTTCTTAAGCGACCCCAAGAAAACAAAAAAACGA
TTGATCACATGGATCACGTTAGATATCACTTCACCTGAAGTTTCGCCGCA
GTTTGCACAAAGCCCGCTGGTATCGCTAGGGGTGATACCGCGTTGCCGCC
ATGACGGTGGCTGTTACACCCGGTGGTGTTATGCAGAGTGCAACGTCCCA
CAGCACCCCTGTGGATACCATAAGCAGCGCGGAGGAGCGGACCACCGACA
GAATCGAGGCGGAGTCATACGGCTGTCCCTAAAACCTCCGCGACTGCCAT
ACCAGTGCCTCCTGCAGCGAGTTATCTTGAAAGCAACGACCGACAACCAA
CTCTTTGACTCGTAGTCATCCCCTCGAGACCCGCTGATCCACCAGCAATC
CAACCTGCTGAGGCTTGCGCAGCACCCGCGGCGGCTGCGGCAGCGCCATC
TGCTGGGTCACCACCTGCTGGGTCGAACCCGCCATCACACCAGAACATCC
CTACACCTCCTCCGGCTGCTGGGGGGCCCACAGCGCCAACCGCCGACACA
GCAGTGCTTTGCTGCGAGTCACTGTGTGAGAAGACTGCTTACCATGCGAA
GCTAGGATAGAAGCCCAAGTTCTGCGCCTCTCCTGCGAAGCCCAGCACGT
TGAAGTGAGTACCAGGACCTTTTTTTTTGTGTGACACGCGATCGGATCTG
CACTTGTTCCAAGCTGTGCCAAGAGATCAAACCTGTATGGGTCACCTGGA
TCCATGGATATACCGCCATTGTATCCTGACCTTCAAAAGACCGAAGTTCG
TTAAAAAGCCCCGCCTTAAATACCGCCGGTGCACGTCAGAAATTGTGCAG
AACGCCCCGATGTGGTACATTTTCCATTTTTTAACGCGCATGTCCAGGGC
ATTATCAGTTGGTTGTTTAAATCATTCGTACCTCGGAGCAGTTCCATTTT
CGTAACAAATTAGGGGAGGTGCGCTCTCGTTCCAACAATACCGCGCTGGG
CGTTTCCCCTATCAAATTTATCTACTCTTGTTGTTTCATGGCCCCCGTGA
ACGACATTGTGCAGATCTTTGCAGCAAACACAGCATCGGAGGCGCCCGTT
GGCGACACCTTGTTGCCTGGATAGTCTGACGAGTGGACGGATGGCTTTGG
TCGGAGTCTCGACGGCACGTCTGCCAAGGGGAAGGGTAAGAGGACGAGGG
ATAAGCTGAGGTTGGAGGCACCGGACTCCCCCATCCCCGAAATTGGCGGT
AGCCTGCAGAGGAAGCGCTACTCTAATGAGTCAAGGTCAGAGCAGCCGGT
TACGCGCTCAAAAAGGCCAAGTGACGGAAGGGGCCAGGGGGGTCTGTCGG
CACATCGTACGCCACTAGGGTTCTTGGGAAACTCGACAAGGCGACTCTTT
CGTCGTGGGTCAAAAGCCTGGGCAAGTATGAGGAGCAGCTGAAACAGGAA
ACAGCAGGCATGGGCAAAATGCAGAACAAGCGTGGGAGTCTGAAGTCACT
GAACACCGGAAGGGGCGAGGTGAACCGCGACACGGAGCGGGAGATTAGCG
ACTGGATCAATGATCTTTGGTTGGAGGCAATATCTGCTCGTGTCTCGATG
AGGATGATCAAGAATAAGGCCTTGGAACTCAACCCACTCTTCTTCAGCCC
GCTTTCCTCACTGCGTGACCTCGCCGGCAGCAGGAAGTACCGGTTGAAGC
AGATCAACTGGTGCACGAGGTTTCTGAAGGTCGATCGCATGCGGATCCGC
CACCCGGTGAGGCCAAAATTTTCCTACCGGCTGGTCTGCGACTGCGATGA
AAGCAGCGAATGAGTGGAGGGCGCTTCGTCACGGAGGTATCGAAGCGGGG
GGCGGTGCTGGTGGGGGCGGCGTTGCGGCGGGTGGAGCCACCCCTGCAGT
ACCCGCTGCAGCAAGCGTACAATATGGACGAAACACCAGTGTGATTTGAG
CCAGCGGGCAAGTCGATTGTGTCGGTAAGTGGCGATGTTTTTGTTGTTCT
GCCTCGCAATATGCCTCTTGTAAAGCGCTTAAATATTTTTCTAGCTTGGG
CAACCGGGAGGCGGAATTCGAAATTGGCTAGGGCCCAAATATTTTTTCAT
TCTCGGATGTATTTTGACACACCGCAGGGCAATCACGTTGCCTTGTTTTT
GGCTCACCCTCTCATTCCTCTTCCGCGGTGTGTCTCTCTTTGTTTTATTT
TTCTCTCTTTTGTCTCTTCTCATGATTTCCCACAGTGGTATGTTTTTTTG
CATTTTTAGCTCCCGCCCCCCCTCCGCCCCTCCACTTGTTTTTGCCTTGT
TGAAAGACGAACAATGTCGGGCAGAAGGAGGTGGGCGTTAAAGCAGGTGG
CAAGGAGACGACGCGCATCACTGCGGTGCCGACAGTGGCTTTGGATGGCA
GCAAACTTCCCGCCATGCTCGTCTAGGGCAAGCATACGCCGCAGGGGCAG
CAACCCGCCGCCAACAGCATCGAGCGAGAGATCAAGACCTACAAGGATAA
GCAGTTCCAACCTTATCCGCGCGGGCTGGTGTACGCGGTTAACTAGAAAG
GATGGCACACTCGGCGCGTGTTCAACGATGTTTGGCCCCCGCAAGTCTGG
GCCCCACCGCTCGGGGCGCTCAGGGCCCCTCGGCAACTCCCGCCACCCCG
TTTCGCTGCTAGTGCTGGACGACTTTACCGTCCACAAGACGGCCGCTTCC
AAGGACGCGATAGACAAAGTCCCACACGACGCTTTTCCTCACCATTGGAT
GGCTCACGCCCAAGAACCAGCCTTGTGATCGGTTCATCAACAAGATCTTA
AAGGCCAAAATGATCCGGCGGTACGACGACTTCATGGCCTCGCCCGACGT
CGAGCGCCACGCCGAACGTGGTTAGCCGGAGCCCACATCAAGGGGTTTGC
TCGGGCAAATGAGTCAAGAAATATGCGACCACGTGGACGCCGCGAGCATC
CGTTCGAGTTGAAAGAAGGCTGGCCTGCTCCTTCCCTTATACGGATCTGG
GGACGAGGCTCGAGCCGACAATGATCTTGGCGCCGACGTCAACGGGAATC
CCCTCTTCCCAGAGGGCGCGAAGGTCGGCACCAACGAGGCTGACCCAGCG
TCGAACACGGCGTGTCTGCTGGAGATTCTCCAAATCTCTGGCGACGACGA
GACAGCGGCCGGAAGAGACGGTGAAGACGCGGGTGGCGCGAGTAGCGAGG
AGGACGGGGAGGGCACAGAAGGCGGGGGTGCCGGGCAGCGGGGAATTGTT
GCCGTGGAATGAGCACGGGTCCAAGCGCGTTGTTCTCTTGGTATATCTGA
CTGATTTTGTGCTTTAGCCTGGTCTCTTCAACCAGCGATTGAAATAAACG
GGAGGTAAACCCGGCTTTCCCGGTTATGAGGCACAGTTCGCCTCGTATTC
ACGGCAAACAGTCACGTCATTTGACGTTGCAGCGTTTGTTGCTGCTGTGG
TACAGCATCCGAAGCACGGGGTTTACGGTATTCTCTACAGAGGAAATGCA
GATGGTTGTTTATCGAGATTTTCTTGGCCTCTGTCTTTCACCTCGTAGGG
GGGCTTGTATGGGGTACATTCTCGTTCGAGGTCATGATAGAGGGAGTCTG
GAGGGAATGCTGTGGATGTTGTGGGTATGATGTAGGCGAGTCACATTAGA
TGCCACACCCGGGTGTAAAATTCCAAGATATATTTTCTCGGGTAATAAAT
GCTTTGAAAGTGAACAATGTTATCCCCGGGGCGTGGTGTATTATGCGATC
TGCGGTGGGGAGGGGATAGTTGTGTGATAAGTCGGTAATTTTGTTGGGGT
TTTAAAGAATGACCACCGGGGTTGGTACCTTGTGATTCTATCACCGGAGT
GTGTTATCTAAGGTGGGTATGATATCTGAGATCTACGGTAGCCGTTCTCA
AGCCTCCTTTCTATGCCGCCTTCAACTTCTCTCGACGGATGTCAAACAAA
CAGGAGATTGCCCGTCTCGACGAGGAGGGTAGGCACAAGCGAACGGAGCT
GGCAAAGCTGGTGGTGAAGGCCGAGGGGATGAGCAAGGACGTGAACGGCA
GCCTCGACCAACTAGCGACCCATATGCTCGCAGCTCCCAGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2676658..2681398+

>mRNA_P-fluviatile_contig13.1895.1 ID=mRNA_P-fluviatile_contig13.1895.1|Name=mRNA_P-fluviatile_contig13.1895.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=672bp|location=Sequence derived from alignment at P-fluviatile_contig13:2676658..2681398+ (Porterinema fluviatile SAG_2381)
ATGGAGGAGGAGAAAGACGCCATCTCTGTTATGCAAGATTCTGTGGACCA
GCTTGCGCTCAGCATGTTCGATTCTCTTCGGCTCATTCCTTTTTCAGAAG
AAGTCGAGGGGGGCGCAAGAGGCGCTATACCACATCGAGGAAACCCAACA
GCAGCTCCGCTACGGCGGGCGGTAGTCACAAATGCTGCTTGGGCAAGCCA
GGTACAATCGCTGGCTGAGGGAGTGCTCAAGCAAGCGAAAGCTTTGGAAC
ACCTGATCGATGTGCTGCCGGGCGCGGAGCTGCGAGAAGACCAGCAAATG
GAGGCGAGAAAAACAGAGGAGACCACACGGCGATGAATGGAGGAGGAGAA
AGACGCCATCTCTGTTATGCAAGATTCTGTGGACCAGCTTGCGCTCAGCA
TGTTCGATTCTCTTCGGCTCATTCCTTTTTCAGAAGAAGTCGAGGGGGGC
GCAAGAGGCGCTATACCACATCGAGGAAACCCAACAGCAGCTCCGCTACG
GCGGGCGGTAGTCACAAATGCTGCTTGGGCAAGCCAGGTACAATCGCTGG
CTGAGGGAGTGCTCAAGCAAGCGAAAGCTTTGGAACACCTGATCGATGTG
CTGCCGGGCGCGGAGCTGCGAGAAGACCAGCAAATGGAGGCGAGAAAAAC
AGAGGAGACCACACGGCGATGA
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