prot_P-fluviatile_contig12.1430.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig12.1430.1
Unique Nameprot_P-fluviatile_contig12.1430.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length541
Homology
BLAST of mRNA_P-fluviatile_contig12.1430.1 vs. uniprot
Match: D8LDF9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDF9_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 3.320e-62
Identity = 144/291 (49.48%), Postives = 181/291 (62.20%), Query Frame = 0
Query:  253 QGACAAKPDPGDQTSPSRPPSQGTQKVGDVLQGVAAGPVRNVLAALLTSTIMTENGRRVLAPTFPSVSALRELKYCGPVDPSEALALQRIVIVRPGVLVRLSLPGKRVGDEGAAALAPALAGIRSVDLRSNNIGXXXXVAIGSALREATATVSKVSKTNGKGGGWT---SDLIILKSLSLAGNRMGDAGVGALSELLE-DDKGGRESGKGQAEETGRAPTALASAAAAPVRSRSPARPQEWAGFLGWLSVAGNPGISDEAKQRLLRAGSNRRCRWDSHGHDGNNTPAMVII 539
            +G     P  GD     RP   G ++   +L+GV  GP+R+ LAALLTST+M E+G RVLAP+FPS+SAL ELKY  P+ P +A A++R ++ RPGVL+RLSL GKR+GD GA ALAPALA IRSVDLRSNNIG      I SALREA ATV    +  G   G     S L +L+SLSLAGNR+ DAG  ALS++LE  ++  +ES       T R P           R R+     E    L WLSVAGNPGIS +A++RLL+AG NR+      G + N  P+MV+I
Sbjct:  248 RGPSELHPADGDNKRLLRPSKPGAEEA--LLRGVREGPLRDALAALLTSTVMGEDGGRVLAPSFPSISALCELKYSEPIGPPQASAVERAILARPGVLLRLSLAGKRIGDRGAMALAPALAAIRSVDLRSNNIGDVGTTTIASALREAAATV----RLGGPAAGANQTKSSLCVLESLSLAGNRIEDAGAAALSDMLEVQNENDKES------ITNRHP-----------RGRNVTSAPELFPSLAWLSVAGNPGISGDARERLLQAGVNRQEMRRRRGSE-NQQPSMVVI 514          
BLAST of mRNA_P-fluviatile_contig12.1430.1 vs. uniprot
Match: A0A6H5JCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ5_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.040e-47
Identity = 139/341 (40.76%), Postives = 179/341 (52.49%), Query Frame = 0
Query:  263 GDQTSPSRPPSQGTQKVGDVLQGVAAGPVRNVLAALLTSTIMTENGRRVLAPTFPSVSALRELKYCGPVDPSEALALQRIVIVR-----------------------------------------------------------PGVLVRLSLPGKRVGDEGAAALAPALAGIRSVDLRSNNIGXXXXVAIGSALREATATVSKVSKTNGKGGGWT---SDLIILKSLSLAGNRMGDAGVGALSELLE-DDKGGRESGKGQAEETGRAPTALASAAAAPVRSRSPARPQEWAGFLGWLSVAGNPGISDEAKQRLLRAGSNRRCRWDSHGHDGNNTPAMVIIA 540
            GD     RP   G + +   L+GV  GP+R+ LAALLTST+M E+G RVLAP+FPS+SA+ ELKY  P+ P +A A++R+++ R                                                           PGVL+RLSL GKR+GD GA ALAPALA +RSVDLRSNNIG     AI SALREA  TV    +  G   G     +   IL++LSLAGNR+ DAG  ALS++LE  D+  +ES   +    GR      +A +AP          E    L WLSVAGNPGIS +A++RLL+AG +R+     H    N  P+MV+IA
Sbjct:  257 GDNKRFLRPSKPGEEAL---LRGVREGPLRDALAALLTSTVMGEDGGRVLAPSFPSISAMCELKYSEPIGPRQASAVERVILARSVILSLVVSINLANRLANDKTSVRCTVFHAGLAFSFGFPFVSFHCFSVLCMPRYGFPFRPGVLLRLSLAGKRIGDRGAMALAPALAAVRSVDLRSNNIGDVGTTAIASALREAAVTV----RLGGAAAGANHTKNRSCILETLSLAGNRIEDAGAAALSDMLEAQDENDKESTINR-HSWGR------NATSAP----------ELFPPLVWLSVAGNPGISGDARERLLQAGVHRQ-EMRRHSGSENQQPSMVVIA 572          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1430.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDF9_ECTSI3.320e-6249.48Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JCJ5_9PHAE1.040e-4740.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 375..399
e-value: 3.5
score: 13.3
coord: 347..374
e-value: 6.8
score: 11.3
coord: 421..448
e-value: 0.29
score: 20.2
NoneNo IPR availablePANTHERPTHR24107FAMILY NOT NAMEDcoord: 318..473
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 60..540
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 54..59
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 42..53
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..59
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..41
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 348..448
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 424..443
e-value: 0.043
score: 13.9
coord: 375..393
e-value: 0.0013
score: 18.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 283..452
e-value: 1.3E-14
score: 55.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1580206..1582310 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1430.1mRNA_P-fluviatile_contig12.1430.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig12 1580206..1582310 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig12.1430.1 ID=prot_P-fluviatile_contig12.1430.1|Name=mRNA_P-fluviatile_contig12.1430.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=541bp
MSALRTTKILAAGATSRRLTPESRLKRKMATRSASRARPMRSLAATYASP
IALPAAALASPPQSPLFLAPLDLEQANGRSPARGDVSIAASPPVDGRGTA
LGGETGAVSRDQRSGASALQTRLAAIGGGGVTAATGGDRDANGIKAGTPG
GAPGKIDGAAAGVGSRSEDGGKRSPAKDRGSSGVIEGQGDDPSLDADSAV
ASRPETTKTAAAPPDVAGSGSECTNRKRRSFDGGGGGDTEDEARRPPPPW
PRQGACAAKPDPGDQTSPSRPPSQGTQKVGDVLQGVAAGPVRNVLAALLT
STIMTENGRRVLAPTFPSVSALRELKYCGPVDPSEALALQRIVIVRPGVL
VRLSLPGKRVGDEGAAALAPALAGIRSVDLRSNNIGDAGAVAIGSALREA
TATVSKVSKTNGKGGGWTSDLIILKSLSLAGNRMGDAGVGALSELLEDDK
GGRESGKGQAEETGRAPTALASAAAAPVRSRSPARPQEWAGFLGWLSVAG
NPGISDEAKQRLLRAGSNRRCRWDSHGHDGNNTPAMVIIA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf