mRNA_P-fluviatile_contig12.1430.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1430.1
Unique NamemRNA_P-fluviatile_contig12.1430.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig12.1430.1 vs. uniprot
Match: D8LDF9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDF9_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 3.320e-62
Identity = 144/291 (49.48%), Postives = 181/291 (62.20%), Query Frame = 1 
Query:  757 QGACAAKPDPGDQTSPSRPPSQGTQKVGDVLQGVAAGPVRNVLAALLTSTIMTENGRRVLAPTFPSVSALRELKYCGPVDPSEALALQRIVIVRPGVLVRLSLPGKRVGDEGAAALAPALAGIRSVDLRSNNIGXXXXVAIGSALREATATVSKVSKTNGKGGGWT---SDLIILKSLSLAGNRMGDAGVGALSELLE-DDKGGRESGKGQAEETGRAPTALASAAAAPVRSRSPARPQEWAGFLGWLSVAGNPGISDEAKQRLLRAGSNRRCRWDSHGHDGNNTPAMVII 1617
            +G     P  GD     RP   G ++   +L+GV  GP+R+ LAALLTST+M E+G RVLAP+FPS+SAL ELKY  P+ P +A A++R ++ RPGVL+RLSL GKR+GD GA ALAPALA IRSVDLRSNNIG      I SALREA ATV    +  G   G     S L +L+SLSLAGNR+ DAG  ALS++LE  ++  +ES       T R P           R R+     E    L WLSVAGNPGIS +A++RLL+AG NR+      G + N  P+MV+I
Sbjct:  248 RGPSELHPADGDNKRLLRPSKPGAEEA--LLRGVREGPLRDALAALLTSTVMGEDGGRVLAPSFPSISALCELKYSEPIGPPQASAVERAILARPGVLLRLSLAGKRIGDRGAMALAPALAAIRSVDLRSNNIGDVGTTTIASALREAAATV----RLGGPAAGANQTKSSLCVLESLSLAGNRIEDAGAAALSDMLEVQNENDKES------ITNRHP-----------RGRNVTSAPELFPSLAWLSVAGNPGISGDARERLLQAGVNRQEMRRRRGSE-NQQPSMVVI 514
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BLAST of mRNA_P-fluviatile_contig12.1430.1 vs. uniprot
Match: A0A6H5JCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ5_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.040e-47
Identity = 139/341 (40.76%), Postives = 179/341 (52.49%), Query Frame = 1 
Query:  787 GDQTSPSRPPSQGTQKVGDVLQGVAAGPVRNVLAALLTSTIMTENGRRVLAPTFPSVSALRELKYCGPVDPSEALALQRIVIVR-----------------------------------------------------------PGVLVRLSLPGKRVGDEGAAALAPALAGIRSVDLRSNNIGXXXXVAIGSALREATATVSKVSKTNGKGGGWT---SDLIILKSLSLAGNRMGDAGVGALSELLE-DDKGGRESGKGQAEETGRAPTALASAAAAPVRSRSPARPQEWAGFLGWLSVAGNPGISDEAKQRLLRAGSNRRCRWDSHGHDGNNTPAMVIIA 1620
            GD     RP   G + +   L+GV  GP+R+ LAALLTST+M E+G RVLAP+FPS+SA+ ELKY  P+ P +A A++R+++ R                                                           PGVL+RLSL GKR+GD GA ALAPALA +RSVDLRSNNIG     AI SALREA  TV    +  G   G     +   IL++LSLAGNR+ DAG  ALS++LE  D+  +ES   +    GR      +A +AP          E    L WLSVAGNPGIS +A++RLL+AG +R+     H    N  P+MV+IA
Sbjct:  257 GDNKRFLRPSKPGEEAL---LRGVREGPLRDALAALLTSTVMGEDGGRVLAPSFPSISAMCELKYSEPIGPRQASAVERVILARSVILSLVVSINLANRLANDKTSVRCTVFHAGLAFSFGFPFVSFHCFSVLCMPRYGFPFRPGVLLRLSLAGKRIGDRGAMALAPALAAVRSVDLRSNNIGDVGTTAIASALREAAVTV----RLGGAAAGANHTKNRSCILETLSLAGNRIEDAGAAALSDMLEAQDENDKESTINR-HSWGR------NATSAP----------ELFPPLVWLSVAGNPGISGDARERLLQAGVHRQ-EMRRHSGSENQQPSMVVIA 572
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDF9_ECTSI3.320e-6249.48Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JCJ5_9PHAE1.040e-4740.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1580206..1582310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-15_000770.1
Exons3
Model size1623
Cds size1623
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1430.1prot_P-fluviatile_contig12.1430.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1580206..1582310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.4361355-CDS-P-fluviatile_contig12:1580205..15812421622815509.4361355-CDS-P-fluviatile_contig12:1580205..1581242Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1580206..1581242 +
1693562087.2941287-CDS-P-fluviatile_contig12:1580205..15812421693562087.2941287-CDS-P-fluviatile_contig12:1580205..1581242Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1580206..1581242 +
1622815509.45013-CDS-P-fluviatile_contig12:1581631..15817941622815509.45013-CDS-P-fluviatile_contig12:1581631..1581794Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1581632..1581794 +
1693562087.3029938-CDS-P-fluviatile_contig12:1581631..15817941693562087.3029938-CDS-P-fluviatile_contig12:1581631..1581794Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1581632..1581794 +
1622815509.4622228-CDS-P-fluviatile_contig12:1581887..15823101622815509.4622228-CDS-P-fluviatile_contig12:1581887..1582310Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1581888..1582310 +
1693562087.312034-CDS-P-fluviatile_contig12:1581887..15823101693562087.312034-CDS-P-fluviatile_contig12:1581887..1582310Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1581888..1582310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1430.1

>prot_P-fluviatile_contig12.1430.1 ID=prot_P-fluviatile_contig12.1430.1|Name=mRNA_P-fluviatile_contig12.1430.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=541bp
MSALRTTKILAAGATSRRLTPESRLKRKMATRSASRARPMRSLAATYASP
IALPAAALASPPQSPLFLAPLDLEQANGRSPARGDVSIAASPPVDGRGTA
LGGETGAVSRDQRSGASALQTRLAAIGGGGVTAATGGDRDANGIKAGTPG
GAPGKIDGAAAGVGSRSEDGGKRSPAKDRGSSGVIEGQGDDPSLDADSAV
ASRPETTKTAAAPPDVAGSGSECTNRKRRSFDGGGGGDTEDEARRPPPPW
PRQGACAAKPDPGDQTSPSRPPSQGTQKVGDVLQGVAAGPVRNVLAALLT
STIMTENGRRVLAPTFPSVSALRELKYCGPVDPSEALALQRIVIVRPGVL
VRLSLPGKRVGDEGAAALAPALAGIRSVDLRSNNIGDAGAVAIGSALREA
TATVSKVSKTNGKGGGWTSDLIILKSLSLAGNRMGDAGVGALSELLEDDK
GGRESGKGQAEETGRAPTALASAAAAPVRSRSPARPQEWAGFLGWLSVAG
NPGISDEAKQRLLRAGSNRRCRWDSHGHDGNNTPAMVIIA*
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mRNA from alignment at P-fluviatile_contig12:1580206..1582310+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1430.1 ID=mRNA_P-fluviatile_contig12.1430.1|Name=mRNA_P-fluviatile_contig12.1430.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2105bp|location=Sequence derived from alignment at P-fluviatile_contig12:1580206..1582310+ (Porterinema fluviatile SAG_2381)
ATGTCGGCCTTGAGAACTACAAAAATTCTCGCAGCAGGGGCGACTTCCCG
GCGGCTCACCCCCGAGAGCCGCCTGAAGCGCAAAATGGCGACAAGATCAG
CGTCGCGGGCGCGTCCGATGCGCTCCCTCGCCGCAACATATGCGAGTCCG
ATAGCGCTGCCAGCGGCGGCCCTCGCCAGCCCGCCGCAATCGCCACTGTT
CCTGGCGCCGCTGGACCTTGAACAGGCAAACGGCCGCTCGCCTGCCCGTG
GTGACGTCTCTATTGCTGCCTCCCCACCGGTCGACGGCAGAGGCACGGCG
CTCGGCGGTGAAACTGGCGCGGTGAGTCGCGATCAGCGAAGCGGCGCCAG
TGCTCTACAGACCCGGTTGGCGGCCATCGGTGGCGGGGGCGTTACCGCCG
CAACTGGCGGTGACCGCGACGCGAATGGCATCAAAGCTGGTACGCCAGGA
GGTGCTCCAGGAAAAATCGACGGCGCCGCTGCCGGCGTTGGCAGCCGGAG
CGAAGACGGCGGGAAGAGGTCGCCGGCCAAAGACCGCGGCAGCAGCGGTG
TAATCGAAGGCCAGGGCGATGATCCTTCGCTTGACGCAGATTCGGCTGTG
GCGTCACGCCCGGAGACGACGAAGACCGCCGCCGCACCCCCCGACGTCGC
CGGCTCTGGATCTGAGTGTACAAATCGCAAACGAAGAAGCTTCGACGGCG
GCGGCGGCGGTGATACGGAGGACGAAGCGCGCCGCCCGCCACCACCGTGG
CCACGGCAAGGTGCATGCGCCGCCAAACCCGACCCCGGGGATCAAACCTC
CCCGTCTCGACCGCCATCACAAGGGACTCAGAAGGTTGGGGATGTTCTTC
AAGGGGTGGCGGCGGGGCCGGTGAGGAATGTCCTCGCGGCTCTGCTGACT
TCCACGATCATGACCGAGAACGGGCGGAGGGTGCTGGCGCCGACATTTCC
GTCAGTGTCGGCGCTGCGGGAACTCAAGTACTGTGGCCCGGTGGATCCCT
CCGAGGCGTTGGCCCTGCAAAGGATTGTTATCGTCAGGTGTGTGATGGAA
AGCAGGAAAGACGTAGAGACAAGCGGTACGGTTGCAGAGTTTCCCCTGTA
GCCGTAAAATCTGGAAGGGTGTGCGCGATGAACTCAGGCCCCTCTCTTTC
GCCCAGTCGTGCATGAATTACTTCGAGACTAGATCGAACGCGGACAAGAG
GCGCCCCTCCCCACCTCCTACCCACTTCTAGTCGAAACGTCATCATCTTT
AGTGTTGGAGCGGGGGGGGGCTGTTGCCGTTAAATTGAGGGTCAACGTTG
TTTCGTCCTCTCGAGACATTCGTGTGGCAACATTTCTCGCCTTCTCGGCG
TTCCTGATCGCTCCCCGCTGTCTGCGTGTCTCTCCCGTCCGTGGCTGGCT
GATATTGTTGGCGTGCTGCGTCACAGGCCCGGCGTGCTCGTCCGCTTGAG
CCTCCCGGGGAAGCGGGTCGGTGACGAGGGAGCGGCGGCTCTCGCCCCGG
CTTTGGCCGGCATCCGGAGCGTTGACCTGCGGAGCAACAACATCGGGGAC
GCCGGCGCCGTGGCCATCGGTTCGGCGCTGCGAGAGGCAGTGGCGGCCGC
AACAGCAGCCGGTACAGCAACAACAGCATCGACGACAACAACAATAACAA
CAATGAACAGAACGCCGGCGGTATTGGGAGAGACGGCGACTGTTTCCAAG
GTATCGAAGACCAACGGGAAAGGAGGGGGCTGGACCAGCGACCTCATCAT
CCTGAAATCCCTCAGCCTTGCAGGAAATCGAATGGGGGATGCGGGTGTGG
GGGCTCTGAGTGAGCTACTGGAGGACGATAAGGGAGGCCGGGAAAGTGGG
AAAGGCCAAGCAGAGGAGACGGGGCGCGCGCCCACTGCGCTTGCCTCAGC
TGCGGCGGCACCAGTGAGGTCGCGATCGCCGGCAAGGCCGCAAGAGTGGG
CGGGGTTTTTGGGTTGGCTCAGTGTCGCCGGAAATCCGGGCATTTCGGAC
GAGGCAAAACAGCGGCTGCTTCGGGCCGGTTCCAATCGACGATGTCGTTG
GGACAGCCACGGTCACGATGGGAACAACACACCCGCGATGGTGATCATCG
CGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:1580206..1582310+

>mRNA_P-fluviatile_contig12.1430.1 ID=mRNA_P-fluviatile_contig12.1430.1|Name=mRNA_P-fluviatile_contig12.1430.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3246bp|location=Sequence derived from alignment at P-fluviatile_contig12:1580206..1582310+ (Porterinema fluviatile SAG_2381)
ATGTCGGCCTTGAGAACTACAAAAATTCTCGCAGCAGGGGCGACTTCCCG
GCGGCTCACCCCCGAGAGCCGCCTGAAGCGCAAAATGGCGACAAGATCAG
CGTCGCGGGCGCGTCCGATGCGCTCCCTCGCCGCAACATATGCGAGTCCG
ATAGCGCTGCCAGCGGCGGCCCTCGCCAGCCCGCCGCAATCGCCACTGTT
CCTGGCGCCGCTGGACCTTGAACAGGCAAACGGCCGCTCGCCTGCCCGTG
GTGACGTCTCTATTGCTGCCTCCCCACCGGTCGACGGCAGAGGCACGGCG
CTCGGCGGTGAAACTGGCGCGGTGAGTCGCGATCAGCGAAGCGGCGCCAG
TGCTCTACAGACCCGGTTGGCGGCCATCGGTGGCGGGGGCGTTACCGCCG
CAACTGGCGGTGACCGCGACGCGAATGGCATCAAAGCTGGTACGCCAGGA
GGTGCTCCAGGAAAAATCGACGGCGCCGCTGCCGGCGTTGGCAGCCGGAG
CGAAGACGGCGGGAAGAGGTCGCCGGCCAAAGACCGCGGCAGCAGCGGTG
TAATCGAAGGCCAGGGCGATGATCCTTCGCTTGACGCAGATTCGGCTGTG
GCGTCACGCCCGGAGACGACGAAGACCGCCGCCGCACCCCCCGACGTCGC
CGGCTCTGGATCTGAGTGTACAAATCGCAAACGAAGAAGCTTCGACGGCG
GCGGCGGCGGTGATACGGAGGACGAAGCGCGCCGCCCGCCACCACCGTGG
CCACGGCAAGGTGCATGCGCCGCCAAACCCGACCCCGGGGATCAAACCTC
CCCGTCTCGACCGCCATCACAAGGGACTCAGAAGGTTGGGGATGTTCTTC
AAGGGGTGGCGGCGGGGCCGGTGAGGAATGTCCTCGCGGCTCTGCTGACT
TCCACGATCATGACCGAGAACGGGCGGAGGGTGCTGGCGCCGACATTTCC
GTCAGTGTCGGCGCTGCGGGAACTCAAGTACTGTGGCCCGGTGGATCCCT
CCGAGGCGTTGGCCCTGCAAAGGATTGTTATCGTCAGATGTCGGCCTTGA
GAACTACAAAAATTCTCGCAGCAGGGGCGACTTCCCGGCGGCTCACCCCC
GAGAGCCGCCTGAAGCGCAAAATGGCGACAAGATCAGCGTCGCGGGCGCG
TCCGATGCGCTCCCTCGCCGCAACATATGCGAGTCCGATAGCGCTGCCAG
CGGCGGCCCTCGCCAGCCCGCCGCAATCGCCACTGTTCCTGGCGCCGCTG
GACCTTGAACAGGCAAACGGCCGCTCGCCTGCCCGTGGTGACGTCTCTAT
TGCTGCCTCCCCACCGGTCGACGGCAGAGGCACGGCGCTCGGCGGTGAAA
CTGGCGCGGTGAGTCGCGATCAGCGAAGCGGCGCCAGTGCTCTACAGACC
CGGTTGGCGGCCATCGGTGGCGGGGGCGTTACCGCCGCAACTGGCGGTGA
CCGCGACGCGAATGGCATCAAAGCTGGTACGCCAGGAGGTGCTCCAGGAA
AAATCGACGGCGCCGCTGCCGGCGTTGGCAGCCGGAGCGAAGACGGCGGG
AAGAGGTCGCCGGCCAAAGACCGCGGCAGCAGCGGTGTAATCGAAGGCCA
GGGCGATGATCCTTCGCTTGACGCAGATTCGGCTGTGGCGTCACGCCCGG
AGACGACGAAGACCGCCGCCGCACCCCCCGACGTCGCCGGCTCTGGATCT
GAGTGTACAAATCGCAAACGAAGAAGCTTCGACGGCGGCGGCGGCGGTGA
TACGGAGGACGAAGCGCGCCGCCCGCCACCACCGTGGCCACGGCAAGGTG
CATGCGCCGCCAAACCCGACCCCGGGGATCAAACCTCCCCGTCTCGACCG
CCATCACAAGGGACTCAGAAGGTTGGGGATGTTCTTCAAGGGGTGGCGGC
GGGGCCGGTGAGGAATGTCCTCGCGGCTCTGCTGACTTCCACGATCATGA
CCGAGAACGGGCGGAGGGTGCTGGCGCCGACATTTCCGTCAGTGTCGGCG
CTGCGGGAACTCAAGTACTGTGGCCCGGTGGATCCCTCCGAGGCGTTGGC
CCTGCAAAGGATTGTTATCGTCAGGCCCGGCGTGCTCGTCCGCTTGAGCC
TCCCGGGGAAGCGGGTCGGTGACGAGGGAGCGGCGGCTCTCGCCCCGGCT
TTGGCCGGCATCCGGAGCGTTGACCTGCGGAGCAACAACATCGGGGACGC
CGGCGCCGTGGCCATCGGTTCGGCGCTGCGAGAGGCAGCCCGGCGTGCTC
GTCCGCTTGAGCCTCCCGGGGAAGCGGGTCGGTGACGAGGGAGCGGCGGC
TCTCGCCCCGGCTTTGGCCGGCATCCGGAGCGTTGACCTGCGGAGCAACA
ACATCGGGGACGCCGGCGCCGTGGCCATCGGTTCGGCGCTGCGAGAGGCA
ACGGCGACTGTTTCCAAGGTATCGAAGACCAACGGGAAAGGAGGGGGCTG
GACCAGCGACCTCATCATCCTGAAATCCCTCAGCCTTGCAGGAAATCGAA
TGGGGGATGCGGGTGTGGGGGCTCTGAGTGAGCTACTGGAGGACGATAAG
GGAGGCCGGGAAAGTGGGAAAGGCCAAGCAGAGGAGACGGGGCGCGCGCC
CACTGCGCTTGCCTCAGCTGCGGCGGCACCAGTGAGGTCGCGATCGCCGG
CAAGGCCGCAAGAGTGGGCGGGGTTTTTGGGTTGGCTCAGTGTCGCCGGA
AATCCGGGCATTTCGGACGAGGCAAAACAGCGGCTGCTTCGGGCCGGTTC
CAATCGACGATGTCGTTGGGACAGCCACGGTCACGATGGGAACAACACAC
CCGCGATGGTGATCATCGCGTGAACGGCGACTGTTTCCAAGGTATCGAAG
ACCAACGGGAAAGGAGGGGGCTGGACCAGCGACCTCATCATCCTGAAATC
CCTCAGCCTTGCAGGAAATCGAATGGGGGATGCGGGTGTGGGGGCTCTGA
GTGAGCTACTGGAGGACGATAAGGGAGGCCGGGAAAGTGGGAAAGGCCAA
GCAGAGGAGACGGGGCGCGCGCCCACTGCGCTTGCCTCAGCTGCGGCGGC
ACCAGTGAGGTCGCGATCGCCGGCAAGGCCGCAAGAGTGGGCGGGGTTTT
TGGGTTGGCTCAGTGTCGCCGGAAATCCGGGCATTTCGGACGAGGCAAAA
CAGCGGCTGCTTCGGGCCGGTTCCAATCGACGATGTCGTTGGGACAGCCA
CGGTCACGATGGGAACAACACACCCGCGATGGTGATCATCGCGTGA
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