prot_P-fluviatile_contig12.1407.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-fluviatile_contig12.1407.1
Unique Name	prot_P-fluviatile_contig12.1407.1
Type	polypeptide
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length	240

Homology

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BLAST of mRNA_P-fluviatile_contig12.1407.1 vs. uniprot
Match: A0A6H5KKC3_9PHAE (LHCP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKC3_9PHAE)

HSP 1 Score: 359 bits (921), Expect = 1.340e-123
Identity = 188/239 (78.66%), Postives = 200/239 (83.68%), Query Frame = 0

Query:    1 MKCAAAVALMMASAEAFVPSTSVLPTSSRATSSSSLQMVFNFGKAAKSATKAVKKAVPKKQAAPTNAVEGLVGYDIETGGVPFDPLNFGKNCPPQQMQWYRAAELKHGRVAMLAAAGQITQHFTHWNDPSGIFDKTNSAWGAMQQVYEQRPFAFVQIILAIFAAEVYANKKYEETGVGGDLGFDPFGLRPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDSLADFA 239
            MKCA A ALM+ASA AFVPS + LPT +   SSSSLQM+  FG+ +K A KA     P  +   TNAV+GLVG DIETGG PFDPL FGKNCPPQQMQWYRAAELKHGRV MLAA GQITQHFTHWNDPSGIFDK+ SAWGAMQQVYEQRPFAF+QIILAIFA EVY NK+ EE   GGDLGFDP GL+PSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDSLA  A
Sbjct:    1 MKCATAFALMVASANAFVPS-APLPTVTSRASSSSLQMIGGFGRKSKPAPKA-----PPARPVSTNAVDGLVGADIETGG-PFDPLGFGKNCPPQQMQWYRAAELKHGRVCMLAAFGQITQHFTHWNDPSGIFDKSGSAWGAMQQVYEQRPFAFLQIILAIFAVEVYGNKRQEENEAGGDLGFDPLGLKPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDSLAGLA 232

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BLAST of mRNA_P-fluviatile_contig12.1407.1 vs. uniprot
Match: A0A0G4GYX1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GYX1_VITBC)

HSP 1 Score: 183 bits (465), Expect = 1.470e-54
Identity = 94/172 (54.65%), Postives = 117/172 (68.02%), Query Frame = 0

Query:   65 TNAVEGLVGYDIETGGVPFDPLNFGKNCPPQQMQWYRAAELKHGRVAMLAAAGQITQHFTHWNDPSGIFDKTNSAWGAMQQVYEQRPFAFVQIILAIFAAEVYANKKYEETGVG-GDLGFDPFGLRPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDSL 235
            TNA +GL+G D+E     FDPL F  N   + ++WYRAAELKHGRV MLAA GQ+ Q F H  DPSG+FD T+S++GA  +V  +RP+A +QI+LAIFA EV   K   + G   GDL FDPF +R  +PE WE  QLRELKNGRLAM  I  M+VQE I+G GV+ +   L
Sbjct:   48 TNA-QGLIGSDLEW--PEFDPLGFTNNISDETLEWYRAAELKHGRVCMLAALGQLVQSFWHLPDPSGVFDSTDSSFGAFNKVVSERPWAAIQILLAIFAVEVLGAKTQAKPGQAPGDLDFDPFKVRSDDPEIWEATQLRELKNGRLAMIGITAMLVQEAISGKGVIAQWQGL 216

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BLAST of mRNA_P-fluviatile_contig12.1407.1 vs. uniprot
Match: A0A835YT25_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT25_9STRA)

HSP 1 Score: 179 bits (453), Expect = 9.820e-53
Identity = 90/165 (54.55%), Postives = 112/165 (67.88%), Query Frame = 0

Query:   69 EGLVGYDIETGGVPFDPLNFGKNCPPQQMQWYRAAELKHGRVAMLAAAGQITQHFTHWNDPSGIFDKTNSAWGAMQQVYEQRPFAFVQIILAIFAAEVYANKKYEETGVG-GDLGFDPFGLRPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKV 232
            EGLVG D+E     +DPL F  N  P  + WYRAAELKHGRVAMLAA G+I Q + H  DP  +F ++   W A+QQVY +RP A  QI+LAIFA E     +  + G   GDL +DP  L+PS+PE WE+VQLRELKNGRLAM AI G  VQE++TG G +E++
Sbjct:   45 EGLVGSDLEL--ATWDPLGFTNNQNPDTINWYRAAELKHGRVAMLAALGEIFQSYYHLPDP--VFSQSARPWDALQQVYAERPLAVAQILLAIFACEAIGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMMAIAGFFVQENLTGQGPIEQI 205

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BLAST of mRNA_P-fluviatile_contig12.1407.1 vs. uniprot
Match: FCP_CHAMQ (Fucoxanthin-chlorophyll a-c binding protein, chloroplastic n=1 Tax=Chattonella marina var. antiqua TaxID=859642 RepID=FCP_CHAMQ)

HSP 1 Score: 171 bits (434), Expect = 6.770e-50
Identity = 91/166 (54.82%), Postives = 110/166 (66.27%), Query Frame = 0

Query:   66 NAVEGLVGYDIETGGVPFDPLNFGKNCPPQQMQWYRAAELKHGRVAMLAAAGQITQHFTHWNDPSGIFDKTNSAWGAMQQVYEQRPFAFVQIILAIFAAEVYANKKYEETG-VGGDLGFDPFGLRPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLE 230
            ++ EGL+G D+E     FDPL F  N  P  ++WYRAAELKHGRVAMLAA GQ+ Q F H  DP  +F ++   W A+ +V  +RP A VQI LAIFA E        + G   GDLG+DP  LR SN E +ER QLRELKNGRLAM AI  MIVQE++TG GV+E
Sbjct:   40 SSAEGLIGSDLEL--PEFDPLGFTNNPAPGALEWYRAAELKHGRVAMLAALGQLVQSFYHLPDP--VFSESAKPWQALVKVCNERPLAAVQIGLAIFACEAIGQANQAKPGQAAGDLGWDPLNLRGSNEEIFERAQLRELKNGRLAMIAITAMIVQENLTGYGVIE 201

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BLAST of mRNA_P-fluviatile_contig12.1407.1 vs. uniprot
Match: W7TCK1_9STRA (Chloroplast light harvesting protein isoform 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCK1_9STRA)

HSP 1 Score: 166 bits (421), Expect = 6.330e-48
Identity = 87/167 (52.10%), Postives = 110/167 (65.87%), Query Frame = 0

Query:   66 NAVEGLVGYDIETGGVPFDPLNFGKNCPPQQMQWYRAAELKHGRVAMLAAAGQITQHFTHWNDPSGIFDKTNSAWGAMQQVYEQRPFAFVQIILAIFAAEVYANKKYEETGVG-GDLGFDPFGLRPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEK 231
            ++ +GL G DIE     FDPL F  N  P+ + WYRAAELKHGRVAMLAA GQI QHF    D SG+F   +    A+ +V  +RP A +QI LAIFA E        + G   GDLG+DP  L+  +PE + +VQ RELKNGRLAM AI GM+VQE++TG+GV+E+
Sbjct:   39 SSAQGLAGSDIEF--PEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPIEALNKVVAERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYAKVQNRELKNGRLAMIAIAGMLVQENLTGLGVIEQ 203

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BLAST of mRNA_P-fluviatile_contig12.1407.1 vs. uniprot
Match: A0A0G4GRR2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GRR2_9ALVE)

HSP 1 Score: 158 bits (399), Expect = 9.620e-45
Identity = 102/231 (44.16%), Postives = 133/231 (57.58%), Query Frame = 0

Query:    4 AAAVALMMASAEAFVPSTSVLPTSSRATSSSSLQMVFNFGKAAKSATKAVKKAVPKKQAAPTNAVEGLVGYDIETGGVPFDPLNFGKNCPPQQMQWYRAAELKHGRVAMLAAAGQITQHFTHWNDPSGIFDKTNSAWGAMQQVYEQRPFAFVQIILAIFAAEVYANKKYEETG-VGGDLGFDPFGLRPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVD 233
            A A++L ++S  AFVPS++ L  SSR + S    +    G+                     NAV G+ G D E     FDP+ F +N P + ++WYRAAELKHGRV MLAA G I    TH   P   F+   S  GA+ ++ E+RP+A +QI+LAIFA E    K   E G  GGDLGFDP GL+PS+PE  E  QLRE+KNGRLAM AILG   QE++T   +++  D
Sbjct:    5 AVALSLSVSSCTAFVPSSNGL-LSSRPSRSGKSSLDMKLGR---------------------NAV-GMPGTDFELPD--FDPIGFTQNAPLETLEWYRAAELKHGRVCMLAALGNIVAGITHL--PDTCFEGKGSL-GAVYKIMEERPWAGLQIVLAIFAVEALGQKIQSEPGREGGDLGFDPLGLKPSDPELLEATQLREIKNGRLAMIAILGQWAQEYVTNRPIIDFDD 207

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BLAST of mRNA_P-fluviatile_contig12.1407.1 vs. uniprot
Match: A0A7S4UG07_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UG07_9DINO)

HSP 1 Score: 149 bits (375), Expect = 6.270e-42
Identity = 80/133 (60.15%), Postives = 94/133 (70.68%), Query Frame = 0

Query:   99 WYRAAELKHGRVAMLAAAGQITQHFTHWNDPSGIFDKTNSAWGAMQQVYEQRPFAFVQIILAIFAAEVYANKKYEETGVG-GDLGFDPFGLRPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLE 230
            WYRAAELKHGRVAMLAA GQI Q F    DP  +F +  + W AM +VYE+RP A VQI+LA FA E          G   GDLGFDP  L+ ++PE +ERVQLRELKNGRLAM+AI  MIVQE++TG GV+E
Sbjct:    1 WYRAAELKHGRVAMLAALGQIFQSFYTLPDP--VFAEKANPWQAMIKVYEERPLAMVQILLAAFACEAAGAFIQARPGQAPGDLGFDPLNLKSNDPEIFERVQLRELKNGRLAMWAIAAMIVQENLTGYGVIE 131

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BLAST of mRNA_P-fluviatile_contig12.1407.1 vs. uniprot
Match: A0A835Z156_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z156_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.680e-41
Identity = 94/231 (40.69%), Postives = 125/231 (54.11%), Query Frame = 0

Query:    4 AAAVALMMASAEAFVPSTSVLPTSSRATSSSSLQMVFNFGKAAKSATKAVKKAVPKKQAAPTNAVEGLVGYDIETGGVPFDPLNFGKNCPPQQMQWYRAAELKHGRVAMLAAAGQITQHFTHWNDPSGIFDKTNSAWGAMQQVYEQRPFAFVQIILAIFAAEVYANKKYEETGVGGDLGFDPFGLRPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDS 234
            A A   ++A A AFVPS+      +R  SSS++QM                            + +GLVG  +ETGGV +DP N       + + WYRAAELKHGRV MLAA G + Q +  W  P  +F  T +   A+ Q+Y +RP A  QI+LAI A EV  +   + T  G DL +DP GL P +PE    +QL+ELKNGRLAM A  G  +QE +TG G +E++ S
Sbjct:    6 AVAALALVAGASAFVPSSFSGAQVARVASSSAMQM----------------------------SADGLVGASVETGGV-WDPANLASKASEEDLAWYRAAELKHGRVCMLAAVGCLVQGY--WQLPDPVFSNTKAV-DAVAQIYTERPGAIYQILLAIAAIEVLGSSIQKYTAPG-DLKWDPLGLAPEDPEELATLQLKELKNGRLAMVATAGFFLQEALTGQGAVEQITS 203

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BLAST of mRNA_P-fluviatile_contig12.1407.1 vs. uniprot
Match: A0A0G4F0S3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0S3_VITBC)

HSP 1 Score: 147 bits (371), Expect = 2.180e-40
Identity = 75/163 (46.01%), Postives = 107/163 (65.64%), Query Frame = 0

Query:   70 GLVGYDIETGGVPFDPLNFGKNCPPQQMQWYRAAELKHGRVAMLAAAGQITQHFTHWNDPSGIFDKTNSAWGAMQQVYEQRPFAFVQIILAIFAAEVYANKKYEETGVGGDLGFDPFGLRPSNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKV 232
            GLVG DI+     FDPL   K    + ++WYRAAELKHGRVAMLAA G + Q+   +  P   F + N    A+ +++ +RP A +QI+ AI A EV  N+   +T  GGDL +DP G++P++PE + ++QLRELKNGRLAM ++LGM  QE +T  G ++++
Sbjct:   56 GLVGNDIDAPN--FDPLGLSKTADDETLKWYRAAELKHGRVAMLAALGFLVQNI--YQLPDSPFQEANPI-NAVYKLWSERPLAIMQILTAIAAIEVLGNQVQLQTEDGGDLKWDPLGIKPNDPEEFRKMQLRELKNGRLAMISVLGMTAQEALTDQGPIDQI 213

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BLAST of mRNA_P-fluviatile_contig12.1407.1 vs. uniprot
Match: A0A0G4ESK4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ESK4_VITBC)

HSP 1 Score: 147 bits (371), Expect = 2.720e-40
Identity = 83/171 (48.54%), Postives = 108/171 (63.16%), Query Frame = 0

Query:   70 GLVGYDIETGGVPFDPLNFGK-NCPPQQMQWYRAAELKHGRVAMLAAAGQITQHFTHWNDPSGIFDKTNSAWGAMQQVYEQRPFAFVQIILAIFAAEVYANKKYEETGVGGDLGFDPFGLRP-----SNPEAWERVQLRELKNGRLAMFAILGMIVQEHITGVGVLEKVDS 234
            GLVG DIE     FDP      +  P+ + WYRAAELKHGR+ MLAA G  TQ      DPSG+F +T     A+ +V  +RP A +Q++LAI A EV A  +  ++   GDLGFDP  L+      SNPEA+E++QLRELKNGRLAM A  GM++Q+ +TG   LE++ S
Sbjct:   50 GLVGSDIEAPN--FDPWKLAAGDLEPETLSWYRAAELKHGRICMLAALGLTTQEVVQLPDPSGVFSETKGI-PALVKVANERPGAIIQLLLAIGAIEVAALNR-ADSAAPGDLGFDPLNLQQKLGLASNPEAFEKMQLRELKNGRLAMVATAGMLIQQFLTGQATLEQLLS 216

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig12.1407.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig12.1407.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KKC3_9PHAE	1.340e-123	78.66	LHCP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
A0A0G4GYX1_VITBC	1.470e-54	54.65	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]
A0A835YT25_9STRA	9.820e-53	54.55	Light harvesting complex protein n=2 Tax=Tribonema...	[more]
FCP_CHAMQ	6.770e-50	54.82	Fucoxanthin-chlorophyll a-c binding protein, chlor...	[more]
W7TCK1_9STRA	6.330e-48	52.10	Chloroplast light harvesting protein isoform 4 n=2...	[more]
A0A0G4GRR2_9ALVE	9.620e-45	44.16	Uncharacterized protein n=1 Tax=Chromera velia CCM...	[more]
A0A7S4UG07_9DINO	6.270e-42	60.15	Hypothetical protein n=1 Tax=Alexandrium monilatum...	[more]
A0A835Z156_9STRA	1.680e-41	40.69	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A0G4F0S3_VITBC	2.180e-40	46.01	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]
A0A0G4ESK4_VITBC	2.720e-40	48.54	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 71..238 e-value: 7.1E-39 score: 135.5
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 80..221 e-value: 5.7E-37 score: 127.7
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 3..225
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 17..239
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 12..16
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..11
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..16
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..16 score: 0.586
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 79..231
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 3..225

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig12	contig	P-fluviatile_contig12:1261899..1266288 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig12.1407.1	mRNA_P-fluviatile_contig12.1407.1	Porterinema fluviatile SAG_2381	mRNA	P-fluviatile_contig12 1260562..1266288 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-fluviatile_contig12.1407.1 ID=prot_P-fluviatile_contig12.1407.1|Name=mRNA_P-fluviatile_contig12.1407.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=240bp
MKCAAAVALMMASAEAFVPSTSVLPTSSRATSSSSLQMVFNFGKAAKSAT
KAVKKAVPKKQAAPTNAVEGLVGYDIETGGVPFDPLNFGKNCPPQQMQWY
RAAELKHGRVAMLAAAGQITQHFTHWNDPSGIFDKTNSAWGAMQQVYEQR
PFAFVQIILAIFAAEVYANKKYEETGVGGDLGFDPFGLRPSNPEAWERVQ
LRELKNGRLAMFAILGMIVQEHITGVGVLEKVDSLADFA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln