prot_P-fluviatile_contig1.436.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig1.436.1
Unique Nameprot_P-fluviatile_contig1.436.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length288
Homology
BLAST of mRNA_P-fluviatile_contig1.436.1 vs. uniprot
Match: D8LNC5_ECTSI (Nuclear nucleic acid-binding protein C1D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC5_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 5.390e-77
Identity = 128/156 (82.05%), Postives = 139/156 (89.10%), Query Frame = 0
Query:    1 MASSSEENKGVESLKNFERALGHVRNSVRPLALMSRDEVVTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPLGHPVKAELDRIRGYFVRLKSLSQPPEQRTLKVDAEASRRFINAALSSDSVWQNAKSTDSKIAQKKRAAAGIGRSEPAGEPE 156
            MA +SEE+KGVESLKNFERALGHVRNSVRPL LMSR+EV  CVSA DRA LNLQVAYGVSSLFYMFLKTQGVSP  HPVK ELDRIRGYF RLK++ +PPEQRTLKVD +ASRRFINAALS DSVWQNAK TD K AQ+KRA+AGIGR+ PAG+PE
Sbjct:    1 MAGASEESKGVESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGDSVWQNAKGTDPKSAQQKRASAGIGRANPAGQPE 156          
BLAST of mRNA_P-fluviatile_contig1.436.1 vs. uniprot
Match: UPI001F04DAC0 (nuclear nucleic acid-binding protein C1D-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04DAC0)

HSP 1 Score: 94.0 bits (232), Expect = 5.210e-20
Identity = 45/113 (39.82%), Postives = 76/113 (67.26%), Query Frame = 0
Query:    8 NKGVESLKNFERALGHVRNSVRPLALMSRDEVVTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPLGHPVKAELDRIRGYFVRLKSLSQPPEQRTLKVDAEASRRFINAAL 120
            N+   ++K+F  + G V  ++ PL   S DE+   +   DRAKL+L V YG++++F+++L TQGV+P  H VK ELDRI+ Y  ++K +S+  ++ ++K+D +A+RRF+  AL
Sbjct:   13 NEIFSAMKDFHHSFGSVEETLEPLLRSSNDELHEKLDVLDRAKLDLMVVYGINTMFWIYLITQGVNPKEHGVKHELDRIKNYMKKVKDVSER-KKASMKIDKDAARRFVKGAL 124          
BLAST of mRNA_P-fluviatile_contig1.436.1 vs. uniprot
Match: L8HHM1_ACACA (Nuclear nucleic acid-binding protein C1D n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HHM1_ACACA)

HSP 1 Score: 90.9 bits (224), Expect = 1.130e-18
Identity = 42/110 (38.18%), Postives = 71/110 (64.55%), Query Frame = 0
Query:   13 SLKNFERALGHVRNSVRPLALMSRDEVVTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPLGHPVKAELDRIRGYFVRLKSLSQPPEQRTLKVDAEASRRFINAALSS 122
            ++   E+A+  V   +      S DE+   +S  D A+L++ +AY +++LFY++LKTQGV P  HPVK E++R++ Y  +LK L+QP E  ++ +D +A+ RFI  A++S
Sbjct:   16 TISTLEKAVSDVEKHIESYLKTSVDEITNDLSTEDGARLSVLLAYALNTLFYIYLKTQGVDPADHPVKDEIERVKEYIQKLKQLTQPKETPSMVLDKQAANRFIQHAVNS 125          
BLAST of mRNA_P-fluviatile_contig1.436.1 vs. uniprot
Match: A0A8J4PQY2_9MYCE (Nuclear nucleic acid-binding protein C1D n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PQY2_9MYCE)

HSP 1 Score: 88.2 bits (217), Expect = 5.890e-18
Identity = 49/132 (37.12%), Postives = 84/132 (63.64%), Query Frame = 0
Query:   12 ESLKNFERALGHVRNSVRPLALMSRDEVVTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPLGHPVKAELDRIRGYFVRLKSLSQPPEQRT-LKVDAEASRRFINAALSSDSVWQNAKSTD-SKIAQKKR 141
            + + NFE  L  +   + P   +S  E    ++  + AKLN+ VAY ++SLF+M+L+TQGVSP  H VK EL+RI+ Y ++LKS++   E++  +++D++A++R I+  L+ +    +  S+D S  +QKKR
Sbjct:   12 QDITNFENILDKLEGQLDPFFKVSLKEHQEKLTPVESAKLNITVAYALNSLFFMYLQTQGVSPHDHQVKNELERIKPYILKLKSMTNKTEEKPKMQIDSDAAKRMIDNTLAMNKKIDSTVSSDNSSSSQKKR 143          
BLAST of mRNA_P-fluviatile_contig1.436.1 vs. uniprot
Match: R1DEY4_EMIHU (Nuclear nucleic acid-binding protein C1D n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DEY4_EMIHU)

HSP 1 Score: 87.8 bits (216), Expect = 1.230e-17
Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 0
Query:   11 VESLKNFERALGHVRNSVRPLALMSRDEVVTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPLGHPVKAELDRIRGYFVRLKSLSQPPE--QRTLKVDAEASRRFINAAL 120
              ++ NFER LG +   VR L      E+   +   + A+L+L VAY +++LFYM+LKTQG+    HPV AEL+RI+GY  ++++ SQ  E  QR   ++A A++RFI  AL
Sbjct:   20 ASAVANFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIKGYIRKVRAASQEAEASQRQASLNASAAKRFIVHAL 131          
BLAST of mRNA_P-fluviatile_contig1.436.1 vs. uniprot
Match: A0A7S3W1R2_EMIHU (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W1R2_EMIHU)

HSP 1 Score: 87.8 bits (216), Expect = 1.530e-17
Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 0
Query:   11 VESLKNFERALGHVRNSVRPLALMSRDEVVTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPLGHPVKAELDRIRGYFVRLKSLSQPPE--QRTLKVDAEASRRFINAAL 120
              ++ NFER LG +   VR L      E+   +   + A+L+L VAY +++LFYM+LKTQG+    HPV AEL+RI+GY  ++++ SQ  E  QR   ++A A++RFI  AL
Sbjct:   26 ASAVANFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIKGYIRKVRAASQEAEASQRQASLNASAAKRFIVHAL 137          
BLAST of mRNA_P-fluviatile_contig1.436.1 vs. uniprot
Match: A0A2R2MU34_LINUN (Nuclear nucleic acid-binding protein C1D n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MU34_LINUN)

HSP 1 Score: 87.8 bits (216), Expect = 2.610e-17
Identity = 47/118 (39.83%), Postives = 75/118 (63.56%), Query Frame = 0
Query:   12 ESLKNFERALGHVRNSVRPLALMSRDEVVTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPLGHPVKAELDRIRGYFVRLKSLSQPPEQRTLKVDAEASRRFINAALSSDSVWQNA 129
            + L +F+ +L  V ++++PL +   +EV   ++  D AK+NL  AY V+SLF+ +L  +G +P  HPVK ELDRIRGY  R+K + +  +++  K+D  AS+RF+ +AL     WQ A
Sbjct:   18 DQLSSFDDSLTKVEDTLKPLLMTPLNEVHEKLNPLDCAKVNLVAAYAVNSLFWTYLNVRGENPKEHPVKQELDRIRGYMNRVKEIQE--KEKAPKLDKPASKRFVKSAL-----WQAA 128          
BLAST of mRNA_P-fluviatile_contig1.436.1 vs. uniprot
Match: C1D_XENLA (Nuclear nucleic acid-binding protein C1D n=2 Tax=Xenopus TaxID=8353 RepID=C1D_XENLA)

HSP 1 Score: 86.3 bits (212), Expect = 3.110e-17
Identity = 44/109 (40.37%), Postives = 72/109 (66.06%), Query Frame = 0
Query:   12 ESLKNFERALGHVRNSVRPLALMSRDEVVTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPLGHPVKAELDRIRGYFVRLKSLSQPPEQRTLKVDAEASRRFINAAL 120
            E L  FE ++G V   ++ +  +SR E++  +   ++AKL+L  AY ++SLF+++L TQG++P  HPVK EL+RIRGY  R+K ++    ++  ++D  A+RRFI  AL
Sbjct:   17 EYLMAFENSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIYLTTQGINPKEHPVKEELERIRGYMNRVKEITD--RKKAARLDKGAARRFIKHAL 123          
BLAST of mRNA_P-fluviatile_contig1.436.1 vs. uniprot
Match: A0A835ZH36_9STRA (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH36_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.500e-17
Identity = 46/110 (41.82%), Postives = 70/110 (63.64%), Query Frame = 0
Query:   11 VESLKNFERALGHVRNSVRPLALMSRDEVVTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPLGHPVKAELDRIRGYFVRLKSLSQPPEQRTLKVDAEASRRFINAAL 120
            V  L N  +AL ++++ +RPL   +R+E+ + V+  + AKLN  +AYG+SSL+YM L+T+G     H VK ELDRI+G   RL+ +  P  QR + V+  A++RFI   L
Sbjct:   22 VAPLTNLHKALHNLKSKLRPLTETTREELASQVTKQEMAKLNAAMAYGISSLYYMLLRTKGCDTTDHGVKKELDRIKGAMGRLQMVKVP--QRGIVVNVAAAQRFIKHGL 129          
BLAST of mRNA_P-fluviatile_contig1.436.1 vs. uniprot
Match: A0A2D4BWA5_PYTIN (Nuclear nucleic acid-binding protein C1D n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWA5_PYTIN)

HSP 1 Score: 86.7 bits (213), Expect = 5.000e-17
Identity = 48/123 (39.02%), Postives = 78/123 (63.41%), Query Frame = 0
Query:   11 VESLKNFERALGHVRNSVRPLALMSRDEVVTCVSAADRAKLNLQVAYGVSSLFYMFLKTQGVSPLG---HPVKAELDRIRGYFVRLKSLSQPPEQRTLKVDAEASRRFINAALSSDSVWQNAK 130
            VE+L + ++ L  V   ++ L   S +E +  +S  ++AK+ + +AY +++L Y++LKTQGVS        VK ELDR++G+  ++K   +  +  TLK+D EAS+RFIN ALS D V+ +AK
Sbjct:    6 VEALTSVDQTLAAVEEHLQVLKNKSLEEFLAELSPIEKAKVQVSLAYSINALLYVYLKTQGVSSKDIRQTHVKQELDRVKGFIKKIKDTEELAKGPTLKLDKEASQRFINNALSGDQVYVDAK 128          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.436.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC5_ECTSI5.390e-7782.05Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
UPI001F04DAC05.210e-2039.82nuclear nucleic acid-binding protein C1D-like n=1 ... [more]
L8HHM1_ACACA1.130e-1838.18Nuclear nucleic acid-binding protein C1D n=1 Tax=A... [more]
A0A8J4PQY2_9MYCE5.890e-1837.12Nuclear nucleic acid-binding protein C1D n=1 Tax=P... [more]
R1DEY4_EMIHU1.230e-1741.96Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
A0A7S3W1R2_EMIHU1.530e-1741.96Nuclear nucleic acid-binding protein C1D (Fragment... [more]
A0A2R2MU34_LINUN2.610e-1739.83Nuclear nucleic acid-binding protein C1D n=1 Tax=L... [more]
C1D_XENLA3.110e-1740.37Nuclear nucleic acid-binding protein C1D n=2 Tax=X... [more]
A0A835ZH36_9STRA3.500e-1741.82Nuclear nucleic acid-binding protein C1D (Fragment... [more]
A0A2D4BWA5_PYTIN5.000e-1739.02Nuclear nucleic acid-binding protein C1D n=2 Tax=P... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007146Sas10/Utp3/C1DPFAMPF04000Sas10_Utp3coord: 14..90
e-value: 9.8E-10
score: 38.9
IPR011082Exosome-associated factor Rrp47/DNA strand repair C1DPANTHERPTHR15341SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSORcoord: 10..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4905735..4908316 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.436.1mRNA_P-fluviatile_contig1.436.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig1 4905731..4909271 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig1.436.1 ID=prot_P-fluviatile_contig1.436.1|Name=mRNA_P-fluviatile_contig1.436.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=288bp
MASSSEENKGVESLKNFERALGHVRNSVRPLALMSRDEVVTCVSAADRAK
LNLQVAYGVSSLFYMFLKTQGVSPLGHPVKAELDRIRGYFVRLKSLSQPP
EQRTLKVDAEASRRFINAALSSDSVWQNAKSTDSKIAQKKRAAAGIGRSE
PAGEPEKIHKPKAASAAVAAGGAPAESAGVSGRSNSSGGGGSASGKRKHA
AADGSAGDSSSPAAGGWTAVEKRRSGGGERVIKRSEAGLAATHKAVSPQR
EDGPDAAAPGESLRATKKAKGTTGSGTNKKTARYHVW*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007146Sas10/Utp3/C1D
IPR011082Exosome-assoc_fac/DNA_repair