mRNA_P-fluviatile_contig9.15041.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15041.1
Unique NamemRNA_P-fluviatile_contig9.15041.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig9.15041.1 vs. uniprot
Match: D7G201_ECTSI (Sel1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G201_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 7.830e-30
Identity = 121/207 (58.45%), Postives = 137/207 (66.18%), Query Frame = 3 
Query:    3 ACVGDMLYNGTGCLRDYGAALRYYLRAANAGEASSANAVGLLYELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPLSALASAAGLPVFRAPYPAYL-PSQNQSDRQYGSGGXXXXXXXXXXXGNCAGGAKFAASLSQQTLGDGDVGSDPGEHAGIAERE---HRPQALVMFQRAAELGHTKATEEIRRLRVRERMDHL 611
            ACVGDMLY GTGCLRDYGAALRYY+RAA+AGEA+SANA       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    DPLSA+ASAAGLP+F+      L PS        G+G               AGG  F A+       DGD+    G   G+ +R    +RP AL MFQRAAELGH +A  E+ RLR+RER+DHL
Sbjct:  842 ACVGDMLYTGTGCLRDYGAALRYYVRAAHAGEATSANAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERGDPLSAIASAAGLPMFQEQQQLPLRPSSGFLTSMAGAG--CPATATPPRCSPPAGGGLFGANGGD----DGDLAVASGSTGGVGQRPLWGNRPLALQMFQRAAELGHPEAMREVHRLRLRERIDHL 1042
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G201_ECTSI7.830e-3058.45Sel1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:366708..368071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue1.6e-23
Seed eggNOG ortholog2880.D7G201
KEGG koko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Exons3
Model size611
Cds size594
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15041.1prot_P-fluviatile_contig9.15041.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 366725..368071 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817308.5569546-UTR-P-fluviatile_contig9:366707..3667241622817308.5569546-UTR-P-fluviatile_contig9:366707..366724Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 366708..366724 +
1693572009.9669714-UTR-P-fluviatile_contig9:366707..3667241693572009.9669714-UTR-P-fluviatile_contig9:366707..366724Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 366708..366724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817308.5677311-CDS-P-fluviatile_contig9:366724..3669091622817308.5677311-CDS-P-fluviatile_contig9:366724..366909Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 366725..366909 +
1693572009.9774494-CDS-P-fluviatile_contig9:366724..3669091693572009.9774494-CDS-P-fluviatile_contig9:366724..366909Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 366725..366909 +
1622817308.5785308-CDS-P-fluviatile_contig9:367581..3678891622817308.5785308-CDS-P-fluviatile_contig9:367581..367889Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 367582..367889 +
1693572009.9857118-CDS-P-fluviatile_contig9:367581..3678891693572009.9857118-CDS-P-fluviatile_contig9:367581..367889Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 367582..367889 +
1622817308.5887852-CDS-P-fluviatile_contig9:367970..3680711622817308.5887852-CDS-P-fluviatile_contig9:367970..368071Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 367971..368071 +
1693572009.9936423-CDS-P-fluviatile_contig9:367970..3680711693572009.9936423-CDS-P-fluviatile_contig9:367970..368071Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 367971..368071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15041.1

>prot_P-fluviatile_contig9.15041.1 ID=prot_P-fluviatile_contig9.15041.1|Name=mRNA_P-fluviatile_contig9.15041.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=198bp
MLYNGTGCLRDYGAALRYYLRAANAGEASSANAVGLLYELGRGVARDLAA
ASAWYQRAADLGSADGAFNAALLLERGDPLSALASAAGLPVFRAPYPAYL
PSQNQSDRQYGSGGSGGGGGSANSAGNCAGGAKFAASLSQQTLGDGDVGS
DPGEHAGIAEREHRPQALVMFQRAAELGHTKATEEIRRLRVRERMDHL
back to top

mRNA from alignment at P-fluviatile_contig9:366708..368071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15041.1 ID=mRNA_P-fluviatile_contig9.15041.1|Name=mRNA_P-fluviatile_contig9.15041.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1364bp|location=Sequence derived from alignment at P-fluviatile_contig9:366708..368071+ (Porterinema fluviatile SAG_2381)
CGGCTTGCGTGGGCGACATGCTCTACAACGGCACCGGGTGCCTGCGTGAT
TATGGCGCCGCCTTGCGATACTACCTTCGCGCGGCCAACGCGGGGGAAGC
CAGCTCCGCGAACGCTGTTGGACTTTTGTACGAGCTAGGGCGTGGCGTCG
CGAGGGACTTGGCGGCGGCGAGCGCATGGTATCAGAGAGCTGCCGATCTA
GGGTAAGATAAAATGAAGTTGCGAGCTTTGTCAAGTTATTATGGTGGTGT
TCAAGGGGTCACTTTAAATTACTTGGAAAAAATACGCAGCGTACAAGTAC
CAGGAGTCTTGGATGACGAAACGTACCTGTGACAACTCTATGTACAGCCA
TCCTCGCGTTAACGACACAAAGCGTTTTTTATCACTTCGGGTACCCTCAA
CGCGGGGAAGTGTCCCTAAGGTTCAGTGGAAGAGGGGCTCATAATAGCCC
CCGCTCCAGAAAAAAAGATCTTACAGCGGGGTGTGCCCTCAAATTTTTGT
GTCCTTCAAGCGGGCACGGCTGACGACGATAGACCTCCCCCCGCGCTTCA
CCCTCGAAATAATGAGTCCGTCTCGAGGTGGCTTTCCGCGCATCATGTCG
CGCCCGGTCATCGCGAATCTTTCCCCCTGTAAGGTTATCAGCGAGCCGAC
GGTGTCGGCATCTATGACATGAGTTCGTTCCGTCCACCGCTTCGTCTGAA
AACCTGAAGTACTTGCGTACATGCTCGTCCTGATCAGTGGATGCCTTTAC
AAAAACACATTTCAGCCCAGGCACGAAGGCGTTTGTCATTCACGGCACCT
TCCCGTCTCTGCCCCCCTACCTCCCGCCCCGGCGCACTCCTGGAATGCCT
TGTCTCCGCTCGCACCACCTTCAGTTCAGCGGATGGAGCTTTCAACGCCG
CCCTGCTTCTGGAACGTGGCGACCCGCTGTCGGCGCTTGCATCGGCAGCT
GGCCTACCGGTGTTTCGTGCGCCCTATCCGGCGTACCTTCCCTCCCAAAA
CCAGAGTGACAGACAATACGGCAGCGGGGGCAGCGGCGGCGGCGGCGGCA
GTGCCAACAGTGCAGGCAACTGTGCTGGCGGCGCAAAATTCGCGGCATCG
TTGTCGCAACAAACGCTTGGCGATGGTGATGTCGGCAGCGATCCGGGAGA
GCACGCGGGCATCGCCGAACGAGAACATCGGCGTCGAAACGAAGGCAGCA
ACCACGCACGACAGGGCGGAGGGAAGAGGGCTGGTCACCATTTGGCGTCG
TGCGGGAGCCGAGCACAGGCGTTGGTGATGTTCCAGCGGGCGGCTGAGCT
TGGACACACGAAGGCCACCGAAGAGATCCGCCGTTTGCGGGTACGAGAGA
GGATGGACCACCTT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig9:366708..368071+

>mRNA_P-fluviatile_contig9.15041.1 ID=mRNA_P-fluviatile_contig9.15041.1|Name=mRNA_P-fluviatile_contig9.15041.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1188bp|location=Sequence derived from alignment at P-fluviatile_contig9:366708..368071+ (Porterinema fluviatile SAG_2381)
ATGCTCTACAACGGCACCGGGTGCCTGCGTGATTATGGCGCCGCCTTGCG
ATACTACCTTCGCGCGGCCAACGCGGGGGAAGCCAGCTCCGCGAACGCTG
TTGGACTTTTGTACGAGCTAGGGCGTGGCGTCGCGAGGGACTTGGCGGCG
GCGAGCGCATGGTATCAGAGAGCTGCCGATCTAGGATGCTCTACAACGGC
ACCGGGTGCCTGCGTGATTATGGCGCCGCCTTGCGATACTACCTTCGCGC
GGCCAACGCGGGGGAAGCCAGCTCCGCGAACGCTGTTGGACTTTTGTACG
AGCTAGGGCGTGGCGTCGCGAGGGACTTGGCGGCGGCGAGCGCATGGTAT
CAGAGAGCTGCCGATCTAGGTTCAGCGGATGGAGCTTTCAACGCCGCCCT
GCTTCTGGAACGTGGCGACCCGCTGTCGGCGCTTGCATCGGCAGCTGGCC
TACCGGTGTTTCGTGCGCCCTATCCGGCGTACCTTCCCTCCCAAAACCAG
AGTGACAGACAATACGGCAGCGGGGGCAGCGGCGGCGGCGGCGGCAGTGC
CAACAGTGCAGGCAACTGTGCTGGCGGCGCAAAATTCGCGGCATCGTTGT
CGCAACAAACGCTTGGCGATGGTGATGTCGGCAGCGATCCGGGAGAGCAC
GCGGGCATCGCCGAACGAGAACATCGGCTTCAGCGGATGGAGCTTTCAAC
GCCGCCCTGCTTCTGGAACGTGGCGACCCGCTGTCGGCGCTTGCATCGGC
AGCTGGCCTACCGGTGTTTCGTGCGCCCTATCCGGCGTACCTTCCCTCCC
AAAACCAGAGTGACAGACAATACGGCAGCGGGGGCAGCGGCGGCGGCGGC
GGCAGTGCCAACAGTGCAGGCAACTGTGCTGGCGGCGCAAAATTCGCGGC
ATCGTTGTCGCAACAAACGCTTGGCGATGGTGATGTCGGCAGCGATCCGG
GAGAGCACGCGGGCATCGCCGAACGAGAACATCGGCCACAGGCGTTGGTG
ATGTTCCAGCGGGCGGCTGAGCTTGGACACACGAAGGCCACCGAAGAGAT
CCGCCGTTTGCGGGTACGAGAGAGGATGGACCACCTTCACAGGCGTTGGT
GATGTTCCAGCGGGCGGCTGAGCTTGGACACACGAAGGCCACCGAAGAGA
TCCGCCGTTTGCGGGTACGAGAGAGGATGGACCACCTT
back to top