mRNA_P-fluviatile_contig9.15036.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15036.1
Unique NamemRNA_P-fluviatile_contig9.15036.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15036.1 vs. uniprot
Match: D8LUC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC9_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.240e-42
Identity = 69/110 (62.73%), Postives = 87/110 (79.09%), Query Frame = 1 
Query:  205 LQGRRGLGSTIKQEPIVPEKLLVKDDWIITRDFFYKRDQNKNGADKLNVRDNRLAKFDKTGEVGYWKVVRRPIPGAPKRRIPLISEGMDFFVLDIPEQGERKNLIVSYEV 534
            +  RRG+   +K  P+V +    K DW ITRDFF+KRDQ KNGAD L  R+N+LA+F+ +GEVGYWK+VRRPIPGAPKR+ PL +EG+D+ VLDIPEQG R+NLIVSYE+
Sbjct:    1 MNSRRGIKGAVKNTPLVQDGSFAKADWRITRDFFFKRDQAKNGADFLTARENKLARFNNSGEVGYWKLVRRPIPGAPKRQSPLGNEGIDYLVLDIPEQGPRRNLIVSYEI 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC9_ECTSI1.240e-4262.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:310599..314860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004500.1
Exons4
Model size835
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15036.1prot_P-fluviatile_contig9.15036.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 310719..314741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817307.8487046-UTR-P-fluviatile_contig9:310598..3107181622817307.8487046-UTR-P-fluviatile_contig9:310598..310718Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 310599..310718 +
1693572009.2516139-UTR-P-fluviatile_contig9:310598..3107181693572009.2516139-UTR-P-fluviatile_contig9:310598..310718Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 310599..310718 +
1622817307.8986034-UTR-P-fluviatile_contig9:314741..3147581622817307.8986034-UTR-P-fluviatile_contig9:314741..314758Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 314742..314758 +
1693572009.2982633-UTR-P-fluviatile_contig9:314741..3147581693572009.2982633-UTR-P-fluviatile_contig9:314741..314758Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 314742..314758 +
1622817307.9111025-UTR-P-fluviatile_contig9:314774..3148601622817307.9111025-UTR-P-fluviatile_contig9:314774..314860Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 314775..314860 +
1693572009.3085454-UTR-P-fluviatile_contig9:314774..3148601693572009.3085454-UTR-P-fluviatile_contig9:314774..314860Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 314775..314860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817307.8626444-CDS-P-fluviatile_contig9:310718..3108561622817307.8626444-CDS-P-fluviatile_contig9:310718..310856Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 310719..310856 +
1693572009.2661607-CDS-P-fluviatile_contig9:310718..3108561693572009.2661607-CDS-P-fluviatile_contig9:310718..310856Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 310719..310856 +
1622817307.8750434-CDS-P-fluviatile_contig9:312548..3126111622817307.8750434-CDS-P-fluviatile_contig9:312548..312611Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 312549..312611 +
1693572009.2753093-CDS-P-fluviatile_contig9:312548..3126111693572009.2753093-CDS-P-fluviatile_contig9:312548..312611Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 312549..312611 +
1622817307.8864226-CDS-P-fluviatile_contig9:314330..3147411622817307.8864226-CDS-P-fluviatile_contig9:314330..314741Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 314331..314741 +
1693572009.2885175-CDS-P-fluviatile_contig9:314330..3147411693572009.2885175-CDS-P-fluviatile_contig9:314330..314741Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 314331..314741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15036.1

>prot_P-fluviatile_contig9.15036.1 ID=prot_P-fluviatile_contig9.15036.1|Name=mRNA_P-fluviatile_contig9.15036.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=204bp
MPRGRRTTCGFTGLLLMMLTVLVGLASALQGRRGLGSTIKQEPIVPEKLL
VKDDWIITRDFFYKRDQNKNGADKLNVRDNRLAKFDKTGEVGYWKVVRRP
IPGAPKRRIPLISEGMDFFVLDIPEQGERKNLIVSYEVCCLAYFGGPRGV
ALAINPIALFHYLGWRLASCWKNVSWLLGRWASCDIRSTVSADTRGDSRQ
YRR*
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mRNA from alignment at P-fluviatile_contig9:310599..314860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15036.1 ID=mRNA_P-fluviatile_contig9.15036.1|Name=mRNA_P-fluviatile_contig9.15036.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4262bp|location=Sequence derived from alignment at P-fluviatile_contig9:310599..314860+ (Porterinema fluviatile SAG_2381)
GGTGGCACAAATACCATCGAGAGCTTGCCCGCTTGGACCAAAGCGCAAGT
CCTTGACAAAAAAACTTTACGCGAGGAGCTGTGCGAAAGTCTTCGAACGC
GGAAGGACAGAGCTCTCATCATGCCGAGAGGGAGGAGGACGACATGTGGG
TTTACCGGCTTGTTGCTCATGATGCTCACGGTCCTGGTAGGCCTGGCTTC
TGCACTCCAGGGCCGCCGTGGATTGGGGAGCACGATCAAGCAAGAGCCAA
TAGTGCCGGTGAGTGCATTGCTCGTGGGACTGTGGTGGTTGCATGTTTTG
ACTGTGTTAACTTAAACTGTCGGTATGTTTGAACACGCGGCATCGTCTCC
GCCGGCGAGAAGCTCTAGGCCCCGTGTCTTGATGTGTCGAGGGTCGACAG
ACCTAGGTGCTCGCCTTTTTGCATCGCCATGCTGTTAAGTCTTGCTTCAT
TCACTTAAGAAGATGATGAAAATGACTTGCAAAAATCGACAAGAGAGAGT
CAGATGTGTCCTAACAACGTTTATGTGGAGTACACTGCTGGTCACTATTA
TAGTTGCTCCGCCCCTCCGCCTTGGGGTCTTCTCTGTGTAAGCGGGTAGA
CTGTTTATCGTACCGCATGCTGATCTGATGGAAACGAGCAGCAGTAGCGT
TTGTCAGGGCGCAAGGTCATCACCCGGCACGGAAGGCGGTAGGCTGGTCG
AGATTGGGCACGAAGTTTTGAGGGACGCCCGAATCCTCGAAACATGAATC
GCCACACTGCTTCGTGTTTCCTACTTTGACCCCTACAGAAACTTGCCGAA
CAGACAACCTATCAAGAATCTTGCGCTTCATTCGCTGCGTCGCTTGGTAG
CTTGCAATGCTCGTGGTTTCGTGGCTTCCTGGAGAGCTTCCACCCTCACT
CCCGAAGTATTTGTGGACGTCAGTTTCCTGAAGGCGTATGCGATGCTTTT
GTGTTGCGCGACGTCCTTCCTGCGCGAACACACCGGAAAGCTTTTGGTCT
TGTGCATTATGAAGCCAGGAGGCTGTGTCTAGTCGGTGCCTGTTCCTATC
ACCGTAGGGGCGGTGTTTCGCTCAGATGCTTATCGGTACATTGGTGATGT
ATCGGGAAAGTGAACAATTTTGCCGGGTTTTTTTTTTTTTTGGTGGGAGG
TTTGCTGACCTTGCAGCCGGGAGGCGAGGTGAAAAACGAAAAAGCAGCAG
TGCTCGTCTTCGCTGTATCCAATCCGGTAGTTAGGTAGCGAGTGTTTGTC
CTCGCCACGCAATTCCGCTTCGCCCGGTACAATGTTATAGCCAACAGAGT
CGCGTAAACATTGCCAGCAGTGATGACGATGGTTGAAAACGACCCGGAAA
CCGGAACAGTCATCAAAAACTGCCTCGGACGGCTTGAAGCCGCGTCTGAC
GCCGCCGGGGGGAGAGGGGACGATCTGGGGTTGCACTTCATCCAACGAGA
CGCTCCCAATACATCGACTTTCGGAGCATGTAAAACGTCGTTGAATTCAA
CAGATGCAAGATCCCTGGCGCCGCTGTTGCTATGCCGGACATTCTAGGCA
GGATCTGTTCAGCAAACATCACGTTTGACATTTCATCACCGGTTAATCGT
AGCTTTTAGTTGGAGATAAAGGATGCGGGTCTGGCGCGTTCATTCTTAAC
CCGGCCTAAACGTCACCCGCACCCCTTACACCATCATTCTCCAGGACCAC
GTGATCCGGTGTATCGTTTTTGACCTGGAACCACATTGCTATTTCCTTGT
CATGCTGTCGCTTCAAATTGTGCCGGTCTCTGTTTTGCATCTCATCATCA
ACAGCGCCGCCACGAACGGGGGAGACTTCTGTTGTCACCGGCAAACTACC
TGAACACAGCAAACTCGGGAATGCGACCGCACGAAAGGCAGTATGTCACG
TGATATGTCGTTTTTCCACGCCTCACATCGTTTTTCTCTTACACCAACAG
GAAAAATTGTTGGTGAAGGACGACTGGATCATCACGCGCGACTTTTTCTA
CAAGCGGGATCAGGTACGCACAGCAGATCAATGTCTCCCTCGCTTAAGGC
TTGCACGCTGCTTCAAGGTGCGACGTTGCATGTGTTGCTGCCTATGACAA
GGCATGTGCACCGATGTACGCATTTCTGCAGGCAGAGATATTGCGTGAAG
GGTTTTGCCTTTCAAGCAGTTGGCCTCTGCTACGGCGCTCTCGTCCGTTG
TGCACTTCTGCTATGTGTTCGACATCGTCAGGAGCCAGAGTGGGAGGTTT
TGACATCACTTCGTGAAATTGCCCGAGGAGTCTTGGCATGTAGCCTCAAG
AGCGAGCTCCGAAAACGGGCAGCAGCCCTCTCCCAAGCCGCACATCGTCT
TTCGTATCCGTTTTTCACGCTGCAGACCCTTGGTTGTTGTCACTGGAGGA
TCCGCTTGTCTGATGTAATGGTCAAGCATAGGCTGCGCATCGACAGGATC
GATAGATGATACGCGAATTCAAGTTATGCAGAGGGCTGGTCGAGATTCGA
CAGTAGTCCTGACCCACTCATTTTTGAGTCCCGGGCGTTCAACCTGGGTA
AGCTCCTTGGGTATGACCATGACACTTCTCTGAGCGGAGTGGCTTGAAGG
GGACCTCAAGCCCCGCATGTCTAATCTGTGGTTTTCAGGCCTGACCCCCG
GATTTGTGGCTTGTGATGCTGATATTTTCAGATTTTTCGATAGTAGTCCT
GACTCACTGGTTTTTTAGTCCTGGGCGTTCAATCTGTGAAAGCTCCTTGG
GTACGAATATCATTTTGAGCCGAGTGATCTGAAGGTGTCCTTTTAACCGG
GGATGTCTAATACCCTCCGGTATGTGGTTTTCAGGCCTGACACTAGGATT
TGTGGCTGTGATGCTGATTTTTCAGTTTTTTAGATAGTAGGCGACCCACT
GGTCTTTAGTCCTGGGCGTTCAACATCTGAAAGCCCCTTGGGTACGAATA
TCATTCTCTGAGCGGAGTGATCTGAAGGTGTCCCTTTAACCCGCACGTTT
CTTCCGTCGTTTGCGGGACTGACCCTCAGATTTTGTGGCTTGTGATGCCG
ATATTTTGAGACAACACCCTTTTCCTCATGGCACACCGGTCGCCCCAGCT
GTCCAGTTGGTATCTTGGTATCCCCGTAAACTTCTACTTGGCAAGTTCAT
GGGGTTCGGGTCCCAGCATGAGCGACTTTTCTCACAAAGACGAGTTTTTT
CTTGCGTTCTTGCCCGTGGATAGCGCTAAGTGGGTGTGTGCACAGTGGGA
AAGAGGTGGCTGAAACTCTTCTCTTAATAAAAACTATCAGCCAGTACCGC
GAGATGAGTGGGGGTCTCAGGAGAGAAGCCTTCTGTGCGACCGCGGTTCA
GATGTTCAGGCAAGGCGCCCCGGCTGGCAAGGCGCCCTTCGAACTCTGGA
AATAAAAGTGATCGTAAAAAAAAAAGGCCGAAGCATGAACTAAAAGAAGT
AAAATCGCATCGCGAGTAATTGACCGGCACATTAAAATCGCAGACAGACA
GTTCTTCGTGAACACGGTGTTGGCAGCCGGAATTAATCCAACGGGATGAG
GAATGTTCCCAATGGGTTGAACCGGCTCTTGATGCTTGCAAACGAGTGCG
TTCTAAACCCCGACAGAAGTTAGCGCCGATACGAGCGCCACGTGTTTTCC
AATCAAACTGTTTCACACACAACCAGCCTCACCATCCTTTCTGCTCCCAC
CCCCCCCGTTCATCCACTCCCGTGGCACACAGAATAAAAACGGGGCTGAT
AAGTTGAACGTGCGCGATAACAGACTCGCCAAATTCGACAAGACAGGCGA
GGTCGGCTATTGGAAGGTGGTGCGACGTCCCATTCCGGGGGCTCCAAAGA
GAAGAATCCCTCTCATAAGCGAAGGGATGGACTTCTTCGTGCTTGACATC
CCCGAACAGGGAGAGCGCAAGAACCTCATCGTGTCGTACGAGGTGTGTTG
TCTTGCGTATTTTGGTGGTCCACGGGGGGTCGCGTTGGCCATTAACCCGA
TAGCGCTCTTCCATTATCTGGGTTGGCGACTTGCTTCGTGTTGGAAAAAT
GTGTCGTGGCTGTTGGGCAGGTGGGCATCGTGTGACATACGGAGCACGGT
GTCCGCGGATACCCGGGGGGACAGCCGGCAGTACAGGCGGTAAGGGATCG
ATCGGTAAATGCTAGTACTACCTAAGACGTCTCCGCGGATGTTTGTTTTC
TTCCGTCTTCTTTTGGTATCCCAACGAAGTACTACCGTCCAGCTGGTCTG
TATTCCGAAAAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:310599..314860+

>mRNA_P-fluviatile_contig9.15036.1 ID=mRNA_P-fluviatile_contig9.15036.1|Name=mRNA_P-fluviatile_contig9.15036.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1224bp|location=Sequence derived from alignment at P-fluviatile_contig9:310599..314860+ (Porterinema fluviatile SAG_2381)
ATGCCGAGAGGGAGGAGGACGACATGTGGGTTTACCGGCTTGTTGCTCAT
GATGCTCACGGTCCTGGTAGGCCTGGCTTCTGCACTCCAGGGCCGCCGTG
GATTGGGGAGCACGATCAAGCAAGAGCCAATAGTGCCGATGCCGAGAGGG
AGGAGGACGACATGTGGGTTTACCGGCTTGTTGCTCATGATGCTCACGGT
CCTGGTAGGCCTGGCTTCTGCACTCCAGGGCCGCCGTGGATTGGGGAGCA
CGATCAAGCAAGAGCCAATAGTGCCGGAAAAATTGTTGGTGAAGGACGAC
TGGATCATCACGCGCGACTTTTTCTACAAGCGGGATCAGGAAAAATTGTT
GGTGAAGGACGACTGGATCATCACGCGCGACTTTTTCTACAAGCGGGATC
AGAATAAAAACGGGGCTGATAAGTTGAACGTGCGCGATAACAGACTCGCC
AAATTCGACAAGACAGGCGAGGTCGGCTATTGGAAGGTGGTGCGACGTCC
CATTCCGGGGGCTCCAAAGAGAAGAATCCCTCTCATAAGCGAAGGGATGG
ACTTCTTCGTGCTTGACATCCCCGAACAGGGAGAGCGCAAGAACCTCATC
GTGTCGTACGAGGTGTGTTGTCTTGCGTATTTTGGTGGTCCACGGGGGGT
CGCGTTGGCCATTAACCCGATAGCGCTCTTCCATTATCTGGGTTGGCGAC
TTGCTTCGTGTTGGAAAAATGTGTCGTGGCTGTTGGGCAGGTGGGCATCG
TGTGACATACGGAGCACGGTGTCCGCGGATACCCGGGGGGACAGCCGGCA
GTACAGGCGGTAAAATAAAAACGGGGCTGATAAGTTGAACGTGCGCGATA
ACAGACTCGCCAAATTCGACAAGACAGGCGAGGTCGGCTATTGGAAGGTG
GTGCGACGTCCCATTCCGGGGGCTCCAAAGAGAAGAATCCCTCTCATAAG
CGAAGGGATGGACTTCTTCGTGCTTGACATCCCCGAACAGGGAGAGCGCA
AGAACCTCATCGTGTCGTACGAGGTGTGTTGTCTTGCGTATTTTGGTGGT
CCACGGGGGGTCGCGTTGGCCATTAACCCGATAGCGCTCTTCCATTATCT
GGGTTGGCGACTTGCTTCGTGTTGGAAAAATGTGTCGTGGCTGTTGGGCA
GGTGGGCATCGTGTGACATACGGAGCACGGTGTCCGCGGATACCCGGGGG
GACAGCCGGCAGTACAGGCGGTAA
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