mRNA_P-fluviatile_contig9.15001.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig9.15001.1
Unique NamemRNA_P-fluviatile_contig9.15001.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig9.15001.1 vs. uniprot
Match: A0A6H5KSN1_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSN1_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 1.600e-83
Identity = 157/193 (81.35%), Postives = 168/193 (87.05%), Query Frame = 3 
Query: 1332 MADEVDFEPEYEEEQPMEEADDG---AXXXXXXXXXXXXXXXXNGGAAPAQGGKGRKGGAKGRGHRNVPAEVEDRYEGRGGVFESVDTGPHGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAQLAIDEMDGSQLLEQEISVTWAFVRGGGKGAGQPRRRR 1901
            MADEVDFEPEYEEEQPM++AD+G         XXXXXXXXXXX       +GGKGRKGGAKGRGH+    EVEDRYEGRGGVFESVD G  GGPQRSVEGWILFVRNVHEEAQEDDIMDKFSE+GAVKNLHVNLDRRTGFVKGYCLVEFEK+EEAQ AIDEMDGSQLL+Q+ISV+WAFV+GG KGAGQPRRRR
Sbjct:    1 MADEVDFEPEYEEEQPMDDADNGQAGGREGQAXXXXXXXXXXXXXXXXXXKGGKGRKGGAKGRGHQGGSMEVEDRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQAAIDEMDGSQLLDQDISVSWAFVKGG-KGAGQPRRRR 192
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BLAST of mRNA_P-fluviatile_contig9.15001.1 vs. uniprot
Match: A0A7S2G621_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G621_9STRA)

HSP 1 Score: 181 bits (460), Expect = 4.010e-49
Identity = 106/190 (55.79%), Postives = 123/190 (64.74%), Query Frame = 3 
Query: 1338 DEVDF-EPEYEEEQPMEEADDGAXXXXXXXXXXXXXXXXNGGAAPAQGGKGRKGGAKGRGHRNVPAEVEDRYEGRGGVFESVDTGPHGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAQLAIDEMDGSQLLEQEISVTWAFV-RGGGKGAGQPRRRR 1901
            DE+D+ E E  EEQP EE                          P   GKG+ GG K +G        E+RY+GRGGVFESVD G  GGP +SVEGWILFVRNVHEEAQEDDI+DKFSE G V+N+HVNLDRRTGFVKGY LVEFE REEA+ AI+ ++G +LL Q ISV WAF+  G GK  G+   RR
Sbjct:    6 DEIDYGEDEMAEEQPAEEXXXXX---------------------PPARGKGKGGGGKQKGRGFKGGNDEERYDGRGGVFESVDAGGEGGPLQSVEGWILFVRNVHEEAQEDDILDKFSESGDVRNIHVNLDRRTGFVKGYALVEFESREEAENAIETLNGEELLGQTISVDWAFLDAGSGKKKGRKGGRR 174
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BLAST of mRNA_P-fluviatile_contig9.15001.1 vs. uniprot
Match: A0A7S2DBP5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DBP5_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.750e-46
Identity = 86/133 (64.66%), Postives = 99/133 (74.44%), Query Frame = 3 
Query: 1503 KGRGHRNVPAEVEDRYEGRGGVFESVDTGPHGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAQLAIDEMDGSQLLEQEISVTWAFVRGGGKGAGQPRRRR 1901
            KGRGH     + EDRY+GRGG+FESV+T    GP  SVEGWILF+R VHEEAQEDDI+DKF E G V+N+HVNLDRRTGFVKGY LVE+E  EEA  AI+  +G +LL Q ISV WAF+   GK    PRRRR
Sbjct:   31 KGRGHTGTAMDTEDRYDGRGGIFESVETADGVGPAESVEGWILFIRGVHEEAQEDDILDKFLECGEVRNIHVNLDRRTGFVKGYALVEYESFEEATSAIETFNGQELLGQTISVDWAFLSDSGK---HPRRRR 160
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BLAST of mRNA_P-fluviatile_contig9.15001.1 vs. uniprot
Match: A0A7S3GV69_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV69_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.190e-42
Identity = 77/119 (64.71%), Postives = 94/119 (78.99%), Query Frame = 3 
Query: 1503 KGRGHRNV-PAEVEDRYEGRGGVFESVDTGPHGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAQLAIDEMDGSQLLEQEISVTWAF 1856
            KGRGH +    +  DRY GRGGVFE++  G   GP +S+EGWI+FV NVH+EAQEDDI+DKFSE+G VKN+HVNLDRRTGFVKGY LVEFE+ ++AQ AI  +DG +LL+Q I V WAF
Sbjct:   39 KGRGHNSGHDGDDGDRYNGRGGVFENIQRGSGAGPLQSIEGWIVFVTNVHQEAQEDDILDKFSEYGTVKNIHVNLDRRTGFVKGYALVEFEELKDAQAAIQGLDGKKLLDQVIQVDWAF 157
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BLAST of mRNA_P-fluviatile_contig9.15001.1 vs. uniprot
Match: A0A7S2S198_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S198_9STRA)

HSP 1 Score: 161 bits (407), Expect = 5.650e-42
Identity = 91/176 (51.70%), Postives = 114/176 (64.77%), Query Frame = 3 
Query: 1332 MADEVDFEPEYEEEQPMEEADDGAXXXXXXXXXXXXXXXXNGGAAPAQGGKGRKGGAKGRGHRNVPAEVEDRYEGRGGVFESVDTGPHGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAQLAIDEMDGSQLLEQEISVTWAFV 1859
            MA+EVDFEP+ E +   EEA                         PA  GK  K   KGRGH     + E+RYEGRGGVF+S+  G   GP +SVEGWILFVR VHEEAQEDDI+DKF++FG V+N+ VNLDRRTGFVKGY L+E+ + +EA  A++ M+G ++L Q ISV WAF+
Sbjct:    9 MAEEVDFEPDEETQMVAEEA-------------------------PASTGKSVK--RKGRGHV-AAMDAEERYEGRGGVFDSI-AGDGPGPAKSVEGWILFVRGVHEEAQEDDILDKFADFGEVRNIAVNLDRRTGFVKGYALIEYAEHDEAAKALEAMNGDEILGQTISVDWAFL 155
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BLAST of mRNA_P-fluviatile_contig9.15001.1 vs. uniprot
Match: A0A813G6W1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G6W1_POLGL)

HSP 1 Score: 155 bits (391), Expect = 4.260e-40
Identity = 80/144 (55.56%), Postives = 101/144 (70.14%), Query Frame = 3 
Query: 1458 GAAPAQGGKGRKGGAKGRGHRNVPAEVEDRYEGRGGVFESV-DTGPHGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAQLAIDEMDGSQLLEQEISVTWAFVRGGGKGAGQ 1886
            GA PA    GRK   KGRG      E ++RY G+ G F+S+ D G  GGP RS+EGW++ V  VHEEAQEDD+ + FSEFG +KNLH+NLDRRTGFVKGY  +E+E ++EA  AI  MDG  LL+Q++SV WAF + GGK  G+
Sbjct:   16 GAKPA----GRK--VKGRG-----GEQDERYAGKAGQFDSLQDDGGEGGPARSIEGWVVIVSGVHEEAQEDDVFEAFSEFGEIKNLHLNLDRRTGFVKGYAFIEYEAKQEADSAIKGMDGQALLDQKLSVQWAFTKAGGKRRGR 148
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BLAST of mRNA_P-fluviatile_contig9.15001.1 vs. uniprot
Match: A0A7S2V458_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V458_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.240e-39
Identity = 84/153 (54.90%), Postives = 101/153 (66.01%), Query Frame = 3 
Query: 1482 KGRKGGAKGRGHRNVPAEVEDRYEGRGGVFESVDTG-PHGGP------------QRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAQLAIDEMDGSQLLEQEISVTWAFVRGGGKGAGQPRRRR 1901
            KG  G  K +G  +V A+ ++RY G  G F+++  G    G             QRSVEGWI+FVR VHEEAQEDDI+D FSEFG VKN+HVNLDRRTGFVKGY LVE+E+  EAQ AI EM G +LL QE++V WAF + GG   G  RR R
Sbjct:   52 KGSSGQVKTKGRGHVGAQTDERYGGASGEFDALGEGVAEAGESTSSTKLAAVAAQRSVEGWIVFVRGVHEEAQEDDILDVFSEFGDVKNIHVNLDRRTGFVKGYALVEYEQLAEAQAAIQEMSGKELLGQEVTVDWAFTKPGGSARGSRRRAR 204
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BLAST of mRNA_P-fluviatile_contig9.15001.1 vs. uniprot
Match: A0A6U2CUA9_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A6U2CUA9_HEMAN)

HSP 1 Score: 154 bits (390), Expect = 1.570e-39
Identity = 79/139 (56.83%), Postives = 100/139 (71.94%), Query Frame = 3 
Query: 1485 GRKGGAKGRGHRNVPA--EVEDRYEGRGGVFESVDTGPHGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAQLAIDEMDGSQLLEQEISVTWAFVRGGGKGAGQPRR 1895
            GRK   KGRG ++  A  E E+RY GR G FESVD     GP +SVEGWI FV  ++EEA E+D+ DKFS+FG +KNL + LDRRTGFVKGY LVE+E R+EAQ AI+EM+G++ +EQ ++V WAF +G  KG    RR
Sbjct:   43 GRK--VKGRGAKDAAAQMEAEERYSGRAGQFESVDNEGGKGPAKSVEGWICFVTGINEEANEEDVYDKFSDFGEIKNLQLPLDRRTGFVKGYALVEYELRKEAQAAIEEMNGAEFMEQTLTVDWAFTKGPFKGRQSTRR 179
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BLAST of mRNA_P-fluviatile_contig9.15001.1 vs. uniprot
Match: A0A7S0E2Z3_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E2Z3_9CRYP)

HSP 1 Score: 151 bits (381), Expect = 1.260e-38
Identity = 70/120 (58.33%), Postives = 92/120 (76.67%), Query Frame = 3 
Query: 1539 EDRYEGRGGVFESVDTGPHGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAQLAIDEMDGSQLLEQEISVTWAFVRGGGKGAGQPRRR 1898
            EDRY G+ G FESVDT    GP +SVEGWI+FV  +HEEA E+DI DKFSE+G +K + + LDRRTGFVKGY LVE+EK+ EAQ AI++M+G++L+EQ ++V WAF +G  +G    RR+
Sbjct:   37 EDRYAGKSGQFESVDTEGGPGPSKSVEGWIVFVMGIHEEANEEDIYDKFSEYGEIKQMQLPLDRRTGFVKGYALVEYEKKSEAQKAIEQMNGAELMEQTLTVDWAFSKGPIRGRASTRRK 156
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BLAST of mRNA_P-fluviatile_contig9.15001.1 vs. uniprot
Match: A0A6I9U898_SESIN (RNA-binding protein 8A n=6 Tax=Lamiales TaxID=4143 RepID=A0A6I9U898_SESIN)

HSP 1 Score: 152 bits (385), Expect = 1.270e-38
Identity = 85/177 (48.02%), Postives = 112/177 (63.28%), Query Frame = 3 
Query: 1335 ADEVDFEPEYEEEQPMEEADDGAXXXXXXXXXXXXXXXXNGGAAPAQGGKGRKGGAKGRGHRNVPAEVEDRYEGRGGVFESVDTGPHGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKREEAQLAIDEMDGSQLLEQEISVTWAFVRG 1865
            A+ VDFEPE +++   E+  DG+                 GG + A     +K   KGRG R+  A   DR+      F+S+D+    GP+RS+EGWI+ V  VHEEAQEDD+ + F EFG +KNLH+NLDRRTGFVKGY L+EFEK +EAQ AI EMDG++LL Q ++V WAF +G
Sbjct:    6 AEAVDFEPE-DDDLMDEDVGDGSPNRGAAASIPRLKSAITGGGSSAP----KK--TKGRGFRDEAAAEADRHARMSARFDSLDSEGGPGPERSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEFEKFDEAQRAISEMDGTELLTQTLNVDWAFSKG 175
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig9.15001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSN1_9PHAE1.600e-8381.35RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2G621_9STRA4.010e-4955.79Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2DBP5_9STRA3.750e-4664.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3GV69_9STRA1.190e-4264.71Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2S198_9STRA5.650e-4251.70Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A813G6W1_POLGL4.260e-4055.56Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S2V458_9STRA1.240e-3954.90Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U2CUA9_HEMAN1.570e-3956.83Hypothetical protein n=3 Tax=Hemiselmis TaxID=7792... [more]
A0A7S0E2Z3_9CRYP1.260e-3858.33Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A6I9U898_SESIN1.270e-3848.02RNA-binding protein 8A n=6 Tax=Lamiales TaxID=4143... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig9contigP-fluviatile_contig9:44421..50089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.9
Seed ortholog evalue1.8e-72
Seed eggNOG ortholog2880.D7FPG0
Preferred nameRBM8A
KEGG koko:K03037,ko:K12876
KEGG Pathwayko03013,ko03015,ko03040,ko03050,ko05169,map03013,map03015,map03040,map03050,map05169
KEGG ModuleM00341,M00430
GOsGO:0000003,GO:0000018,GO:0000184,GO:0000226,GO:0000335,GO:0000337,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0000578,GO:0000956,GO:0001709,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007017,GO:0007028,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007173,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007294,GO:0007308,GO:0007309,GO:0007310,GO:0007314,GO:0007315,GO:0007316,GO:0007317,GO:0007350,GO:0007351,GO:0007389,GO:0008104,GO:0008150,GO:0008152,GO:0008298,GO:0008358,GO:0008380,GO:0008595,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009798,GO:0009880,GO:0009892,GO:0009893,GO:0009948,GO:0009950,GO:0009952,GO:0009953,GO:0009987,GO:0009994,GO:0010467,GO:0010468,GO:0010528,GO:0010529,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019094,GO:0019219,GO:0019222,GO:0019439,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030425,GO:0030706,GO:0030716,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0035282,GO:0036477,GO:0038127,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043900,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044703,GO:0045165,GO:0045184,GO:0045292,GO:0045451,GO:0045595,GO:0045910,GO:0045934,GO:0045995,GO:0046483,GO:0046595,GO:0046700,GO:0046907,GO:0048024,GO:0048468,GO:0048469,GO:0048477,GO:0048518,GO:0048519,GO:0048523,GO:0048599,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050684,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051028,GO:0051052,GO:0051053,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051252,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051663,GO:0051704,GO:0051716,GO:0060255,GO:0060281,GO:0060284,GO:0060341,GO:0060810,GO:0060811,GO:0065007,GO:0070013,GO:0070727,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097447,GO:0097458,GO:0120025,GO:0120038,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1902875,GO:1903311,GO:1903429,GO:1904580,GO:1905879,GO:1990904,GO:2000026,GO:2000241
EggNOG free text desc.establishment of pole plasm mRNA localization
EggNOG OGsKOG0130@1,KOG0130@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041,ko03051
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-14_004800.1
Exons4
Model size2820
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig9.15001.1prot_P-fluviatile_contig9.15001.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig9 45752..49173 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817304.4510927-UTR-P-fluviatile_contig9:44420..457511622817304.4510927-UTR-P-fluviatile_contig9:44420..45751Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 44421..45751 +
1693572002.3521762-UTR-P-fluviatile_contig9:44420..457511693572002.3521762-UTR-P-fluviatile_contig9:44420..45751Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 44421..45751 +
1622817304.5049136-UTR-P-fluviatile_contig9:49173..500891622817304.5049136-UTR-P-fluviatile_contig9:49173..50089Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 49174..50089 +
1693572002.6114619-UTR-P-fluviatile_contig9:49173..500891693572002.6114619-UTR-P-fluviatile_contig9:49173..50089Porterinema fluviatile SAG_2381UTRP-fluviatile_contig9 49174..50089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817304.4645414-CDS-P-fluviatile_contig9:45751..459661622817304.4645414-CDS-P-fluviatile_contig9:45751..45966Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 45752..45966 +
1693572002.4632428-CDS-P-fluviatile_contig9:45751..459661693572002.4632428-CDS-P-fluviatile_contig9:45751..45966Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 45752..45966 +
1622817304.4756732-CDS-P-fluviatile_contig9:47725..479271622817304.4756732-CDS-P-fluviatile_contig9:47725..47927Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 47726..47927 +
1693572002.4762604-CDS-P-fluviatile_contig9:47725..479271693572002.4762604-CDS-P-fluviatile_contig9:47725..47927Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 47726..47927 +
1622817304.485519-CDS-P-fluviatile_contig9:48489..486071622817304.485519-CDS-P-fluviatile_contig9:48489..48607Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 48490..48607 +
1693572002.4867604-CDS-P-fluviatile_contig9:48489..486071693572002.4867604-CDS-P-fluviatile_contig9:48489..48607Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 48490..48607 +
1622817304.495081-CDS-P-fluviatile_contig9:49135..491731622817304.495081-CDS-P-fluviatile_contig9:49135..49173Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 49136..49173 +
1693572002.4968972-CDS-P-fluviatile_contig9:49135..491731693572002.4968972-CDS-P-fluviatile_contig9:49135..49173Porterinema fluviatile SAG_2381CDSP-fluviatile_contig9 49136..49173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig9.15001.1

>prot_P-fluviatile_contig9.15001.1 ID=prot_P-fluviatile_contig9.15001.1|Name=mRNA_P-fluviatile_contig9.15001.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=191bp
MADEVDFEPEYEEEQPMEEADDGAEVGGDAEVAGEDVMVGNGGAAPAQGG
KGRKGGAKGRGHRNVPAEVEDRYEGRGGVFESVDTGPHGGPQRSVEGWIL
FVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKRE
EAQLAIDEMDGSQLLEQEISVTWAFVRGGGKGAGQPRRRR*
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mRNA from alignment at P-fluviatile_contig9:44421..50089+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig9.15001.1 ID=mRNA_P-fluviatile_contig9.15001.1|Name=mRNA_P-fluviatile_contig9.15001.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5669bp|location=Sequence derived from alignment at P-fluviatile_contig9:44421..50089+ (Porterinema fluviatile SAG_2381)
GCCTCACCACCGTGCCGAGCTGACCAAGCGTTGGATCCTCGCGGAACACG
AAGAGATAAAGGTGGATGGTGGCCTGGGCAGTGTTGGTGTAGGGATGACG
ATGTTGCATCGATACACTGCCGCTTGGACGCATTCGTGGTGAAAATCAGA
GGGTGTGGGGGGGGCGAAATCGGGGGTTGTTGGCCTGGTTAGAGGGTCGC
TTTTTGCCCACCGCTCGCCTCCCTCACACGCACGTGCCAGGATTTTCGTA
AAGGCACGCACTTGCGACGATAATCTTGAAGCATACGATCGAATACGGTC
TCGTGTGGAAAAAATGAGAGGGAAGGGGGAGGCGGAGGATAGATACCTGA
CCGGACAAGCTTAGTAGTATCTGCAGGGTGTGTGGCCATGGGGGGAGGAC
GAGAGGGGAGAAGGGGGTGGGGTGTGGGGGTTGAAGCTGCAAGATGTGAA
TCATGGCGTGATGCATTTTGCCGTGTGACCGTGTATGGTTCACGACGGCA
CAACGGCGACGAAAGTAAAGTCATGCGGGAGGGGGTTCCGCGAATCCAAA
GGATTTTGTCACGCTCCACTCGCACATCGCAACGGCTGATTCCATCAAAC
CAGCCGAGCTGTGTATGTATCTACGAGAGCTTGTGGCGTGCTTAAGTGGA
CAACGAAAGGTTAAGCACGTCCAATCTGACGATTTGCCGCGTGTTTGCTA
AGGAGACAGATCTGTTTGGGATCGCACCCGCTGCCTATCCACATGAGATA
CTTTCCAGCCGTCGAACCCCCCCACCCCCCCCCTCTCTCTCTCGTTGCAG
ACGCCACCAAATCTGCTCGAAGCTCATCAAATGGGTGCGATAAAGCAAGT
CATAGGAGAGGATTCCCAATTCTGGGTTCTGGTGTATTGCACTGGACGTG
TTGCGAAAACAACGCTCTGGAGATTTTCAAAAGGGGGAAGAATTTTTTTC
AAGTTTGAATTTTTCTGTCCCCGTTTCAAAGCCGTCCCATCTCCGATTTT
CTACGCCGATAAGCGCTCTCTCCCGTGCCATCCACAATCATTCGGTCGTG
GGCGGCACCGCCTGCAAAGCACTCAACCGAAAACGTGCGTGCCTAATGGG
CTCAATCGAATCGACGAAGCGAAATCCAGCAACATCCTCCTCCAAGAAGA
TTCTCCAAGATTTCCTCGACAAGACCCCTCAGTCCTCCTTCGTGCGTGAA
CGCAACTTCAGCAGCGCGGCGCGGCACACCAGCACATCAACACACTGCCA
GGGGAGCGGCAGCAGCAACAGCGGCAGGAGCAGCATCGGCATCAGCCAAG
AGGCGCGAGTCTCTCAGAACTCCAAAAAAACATGGCGGACGAGGTCGACT
TCGAGCCGGAGTACGAAGAGGAGCAACCCATGGAGGAAGCAGACGACGGT
GCGGAAGTAGGGGGTGACGCGGAGGTCGCGGGGGAGGACGTGATGGTGGG
GAACGGCGGCGCAGCACCCGCGCAGGGCGGCAAGGGGAGGAAAGGCGGCG
CGAAGGGGCGAGGGCACCGCAACGTCCCCGCGGAGGTGGAAGATAGGTGC
GCCACATATTGATCGCCGTCTAGTTTGGCTACCAGCTGTCGCTCAGCTCG
AGGAGGCAGCCAGCGGGTAGTAGAGCGTGACCAAACGGCGGGAGCAGAGC
GGGGGGATAGGTGCGGAAAGCATGTGCTTGCAAGCCGCAGGAAGCAAAAG
CCAAAGGGCCAATGAACAGCACACGAGAACAAGCAAGGGGCTCCCGCTTG
CTCCCCGCTCCCGAGCTGCTGAAGTATTGTGCTAGGTACCACCTATATTC
TCTCCCCCCAAAGCGCAAACGGATGACGAGAAACTGCACTCGCCAGCCGG
CACTCAGAACGATTTAGCAGCGAAAGGCCAGTGTAGAGTGTCGATAGATT
TTGTTTCACCTTTTCCCGCAGCCGCCTCGAAGGTTGCACTGCTGTAACTA
AATCGTCATATTATTAGCAGACGTCTTCCGTCGAAGAGGTCCCATCTCCG
TCACCCCTCCGTCACGCATTCCCCCCCTGTGCAACCGACCTGCGCCCTAA
TCACCCTTGTCGCAGCCTTTCTCTCATCCCCAGCGCCTAAAGTAGGAGAT
ACCTCTGAAAACGGTCGCTGTCTAACTGGTCCGCAAGCGTGTGCGCCCCA
TGAGTAACTTTATTAGCATTTGTGTTCGGGCTGGGCAAAATGGCAGCTGG
AGGAACACACAAGTGGGGTAAGGGAAGGGAAGGGCTGAAGGTCTCAACCG
CTCGTCGCGCGGCGTGCGACAGCAAGGGGCCCCGTGGTGGACCGAACAGC
CTCCGCTCCTTACGGCGACTGTAGCCCCTGCCCGCCCTCTCGATTCTGTT
GGCCCACCTGACGGACATGCATTGCGCTGTAAGCGACCAAATTGCCCGTC
CCCCTACCCTGCCCCGCCGACACACACAAACTAGTCTTCTCTCGTGCCCC
GTGTACACGCCCCTGCGGTGACTCGTATCTCGTCTCTGTTGCTCCTACAT
ATTTTTGCCCGGTTTATATTTCGTTACTGTGGGATGATTTTCCTTGCGAT
TGTCTTTCAATCTGCCGGTGGTTTGCCTGGGAAGTCGATGAGGGCAGAAG
GCGTCTCCTCGGTTGGGCCGGGTTGTTTGGATGTCCAGGAGCATTTCGCA
GATATCGGAATGTTATCATGAGTGACGGCGACGACGAAGCGAGTCCAAAG
ACGAAAATTTCAGCGACGAAAAGCAGCAGAAGCAGCAGCAGTAGCAGCGG
CGGCGGCGGCAGCAGCAGCAACAGCAACACCAGCGCGAACAACATCACCA
CTACCAATACCAACAGCAACAACGATACCGACAACAATAGCAGCAGCAGC
AGAGAAAAGAACAGAATAATACTTAGTAACCACAACAGCAACAAGAATAG
CAGGGGGAAAAATCGACGACAACGGCCCATCGTAGCCGGCAATCCAGATT
CACATGCATGCCAGTGCGTGTCGTGTTTCTCTCGAATCACCGCGGGGTCG
GCACACGACCGATGCAGTTGCCTGTGCACAAGGGCGTCATACATGCCTTC
ATTTTGTGCGTGTTCTTAGCTTTTGCTTTTCCAAACACCATGCACATGCC
GCACACGTCAGGGCCATTCCGCTCGTGATTAGAGTAACGCCTTCGAGAAC
CGTTCAAATGGCCACATAAGGGGAATCAGGTATCTACGTGTCCGAATCCA
GCTCAACTGTTATTCTCACAGATAATGTGTTTTGAAGGTTGTGACGATTT
TTAAACGTAATATAGTTTGTGAGATGCAACATATTAAAGAAACACAAATA
CACAGATACGAGGGTCGCGGAGGCGTTTTCGAGTCCGTGGACACGGGGCC
ACACGGCGGACCTCAGCGCAGCGTGGAGGGATGGATCCTTTTCGTTCGCA
ACGTGCATGAGGAGGCCCAGGAGGACGACATAATGGACAAGTTCTCCGAG
TTCGGGGCGGTGAAAAACTTGCACGTGAACCTCGACAGGAGGACGGGTTT
CGTCAAGGTCCGTACGTCGCTGTGATGCGCGTGTGTGTTTCGTAGGTTTT
CTCGTCGGTTTTATTTCCCTGTCTTTGCCGTCGGTTCGTGCTTCGGTTCG
TCTGTGTAATTTGTTTCATGGATTGCCTGCGTTTGTGTTCAAACAGCGTT
CGGTGCTTTCTTCACCTTGTGTTCATTGTGTTCATGGCGTGCCTGCGTAG
GGCTTCGTCGCTCTCTTCGCATGTTGTGGGCAGGCCGCGAGAAGTTCTCT
TGTGTGATTCGTGCGGTAGACCGGCGCCTCCGATCCTTGTCTCCAGCGAT
TGGTTCACTTCCACCTCTGGTGACATCCGACCGCGCACGACGCTGTTTGA
ATTTACAGACCGGACCTTCATGGTTCGCTGGTCCCCGCGAGCAGGGCGAT
GGCAATGGGTTGCGTCGGTGAACGCTCCGTCCGCGCTTTCCGTCTATCCG
CGACTTCCTTCCCGTGCGATTTATACTCTTGGCAATCCTCGCTTGCTTGC
TTGCTTGCTTGCTGCCGCTGCGACCACTGCTGCCACTGCCGCCGCCTCCG
CTGCCCTTGACCCGACCAGGGGTACTGTTTGGTGGAGTTTGAGAAGAGGG
AGGAGGCGCAATTGGCTATCGACGAAATGGACGGGTCCCAGCTCTTGGAG
CAGGAAATCTCCGTGACGTGGGCCTTCGTCAGGGGCGGTAAGGGCCGTTT
TGTCCCATCTTGCGGTTTCCCGACATGGTCGTCCTCAGAAGCTCCGTTGT
CCGAACATCTCTGTTCTGTCTGTGTCGACGGTTTTCGCTAAATTTGCGTG
TTCGCACGCTTCTTTCCTTCTTGCAGTATGGTATCAGTCTCAAAGTCGAA
TTTTCAGCGCACACCGGCATTGACACGAGCGTCAGCACTGCCGCGAGCTC
ACGAACATCCGCCGTGCTTGTTGTTTGTCGACTGACATTATTTACCCCGT
TCTTGATGACGAGAGTGAGCTCCAAGACATTCAGGACCAAAAACGCCGCT
GTTTTCCTCCTCCCAAGTCCTCCTTTGATGCTGGAGGAGTCGCCGACTCG
AGGGGCGTGTTCACGTCTCGCAAGGACAAGCAGAACACTTCGCTCCGACA
CAAGCGTGCCCGTGCTTAATCGTCGTGCACAAGATGTAATCGTTTTGCTT
ATGTCCTCTTAACGCTCTGTTTTTTTCTTGTTCCTTCTTTCTTTTCCTTT
CCCTTTTTCGCGAAGGAGGAAAGGGCGCGGGGCAACCCCGGAGGCGACGG
TAGGCGAGCAAAATGAACCGTAGGTGCGCGTGTCGGCGGCGGGGGAGTTA
TTTCTTGGTGTTCTACGGGCACGAGGAAGTGTGCTGCCGGTGAAGACACC
CGCCCATCTCCGCACCTGCTCCCTTGTCCTTGAGCCCTCGTGAGTCCGAG
CTCTTCCGAAGATTTCCGACCAAGATTGGAGCAGGTTTTGGATTCTGCCA
GAGTTTGGGACGCGGAGGGCGCCAGCCGGGTCGAGGGGTACGGGCGCCGG
GCGGATAAGGAGGGAGGAGCGGGGCTTCCAAGTAGGCGACAAAAGAGCGT
GTATGCGAAAGAACAAGGCCGAGTGCAGTGTTGTCACCGGCTTTGTGAGT
CTAGGGAACGGGGCGGGGAGGATTTTGTGATATTGCTGCCTCTGGTTTTG
TTTTGTTATCCGCCCTTTCGAGTGCATGGCTCTCGGGCTGAAATTTAATG
GACTGGGGCAACGAGTGCCACACTATCCGCTGTTTTCGCATCTACCTAGC
GGGAAAGTCGCACATGTGTTTCATCTAAGCGCGTACCTTTTATTTGGTGG
CGTTGATCAGGGGAAAGCTACCAGCCCTCTTCGGTATCCGACTCGCGATG
CAGCAGGCAGGTCAGGCCTTGAGAAAGCGAGTTTAGGAACGGAGCACCTG
TGAACGGTACTTCTACGCACGCAAACCCCGGGCGGGAAACATTCCTCGGT
GCGGTGGTCGTGACGGGTGGAGAGGGGGGCCGGCATCGTTGGGGTGGGGT
AGGAGGGGGTTGATGGCGCCTCGACGGGCTTCCCTCCCACGCTTGACTTG
GGGGAAGTAGGGGTTCAATAGAGCGTCCTTGAGAAAAAAACATTGTGTTA
ACCTCCTGCGCGATCCCGGCTCATGCGCCCACGCGCGGCCGGAGGTTGAC
CGGCGCCCAGATCAAATGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig9:44421..50089+

>mRNA_P-fluviatile_contig9.15001.1 ID=mRNA_P-fluviatile_contig9.15001.1|Name=mRNA_P-fluviatile_contig9.15001.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1146bp|location=Sequence derived from alignment at P-fluviatile_contig9:44421..50089+ (Porterinema fluviatile SAG_2381)
ATGGCGGACGAGGTCGACTTCGAGCCGGAGTACGAAGAGGAGCAACCCAT
GGAGGAAGCAGACGACGGTGCGGAAGTAGGGGGTGACGCGGAGGTCGCGG
GGGAGGACGTGATGGTGGGGAACGGCGGCGCAGCACCCGCGCAGGGCGGC
AAGGGGAGGAAAGGCGGCGCGAAGGGGCGAGGGCACCGCAACGTCCCCGC
GGAGGTGGAAGATAGATGGCGGACGAGGTCGACTTCGAGCCGGAGTACGA
AGAGGAGCAACCCATGGAGGAAGCAGACGACGGTGCGGAAGTAGGGGGTG
ACGCGGAGGTCGCGGGGGAGGACGTGATGGTGGGGAACGGCGGCGCAGCA
CCCGCGCAGGGCGGCAAGGGGAGGAAAGGCGGCGCGAAGGGGCGAGGGCA
CCGCAACGTCCCCGCGGAGGTGGAAGATAGATACGAGGGTCGCGGAGGCG
TTTTCGAGTCCGTGGACACGGGGCCACACGGCGGACCTCAGCGCAGCGTG
GAGGGATGGATCCTTTTCGTTCGCAACGTGCATGAGGAGGCCCAGGAGGA
CGACATAATGGACAAGTTCTCCGAGTTCGGGGCGGTGAAAAACTTGCACG
TGAACCTCGACAGGAGGACGGGTTTCGTCAAGATACGAGGGTCGCGGAGG
CGTTTTCGAGTCCGTGGACACGGGGCCACACGGCGGACCTCAGCGCAGCG
TGGAGGGATGGATCCTTTTCGTTCGCAACGTGCATGAGGAGGCCCAGGAG
GACGACATAATGGACAAGTTCTCCGAGTTCGGGGCGGTGAAAAACTTGCA
CGTGAACCTCGACAGGAGGACGGGTTTCGTCAAGGGGTACTGTTTGGTGG
AGTTTGAGAAGAGGGAGGAGGCGCAATTGGCTATCGACGAAATGGACGGG
TCCCAGCTCTTGGAGCAGGAAATCTCCGTGACGTGGGCCTTCGTCAGGGG
CGGGGTACTGTTTGGTGGAGTTTGAGAAGAGGGAGGAGGCGCAATTGGCT
ATCGACGAAATGGACGGGTCCCAGCTCTTGGAGCAGGAAATCTCCGTGAC
GTGGGCCTTCGTCAGGGGCGGAGGAAAGGGCGCGGGGCAACCCCGGAGGC
GACGGTAGGAGGAAAGGGCGCGGGGCAACCCCGGAGGCGACGGTAG
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