mRNA_P-fluviatile_contig89.14957.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig89.14957.1
Unique NamemRNA_P-fluviatile_contig89.14957.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig89.14957.1 vs. uniprot
Match: PSBA_ECTSI (Photosystem II protein D1 n=1129 Tax=Eukaryota TaxID=2759 RepID=PSBA_ECTSI)

HSP 1 Score: 670 bits (1728), Expect = 1.110e-242
Identity = 327/331 (98.79%), Postives = 330/331 (99.70%), Query Frame = 1 
Query:    1 IGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAVSAPAVVG 993
            IGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAAS+EEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILM PFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVA+SAP+VVG
Sbjct:   30 IGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMRPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 360
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BLAST of mRNA_P-fluviatile_contig89.14957.1 vs. uniprot
Match: A0A1N7TJI8_9PHAE (Photosystem II protein D1 n=412 Tax=Eukaryota TaxID=2759 RepID=A0A1N7TJI8_9PHAE)

HSP 1 Score: 666 bits (1718), Expect = 3.710e-241
Identity = 321/331 (96.98%), Postives = 329/331 (99.40%), Query Frame = 1 
Query:    1 IGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAVSAPAVVG 993
            IGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA S+EEWLYNGGPYQL+VFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPV+ IWLT+LG+STMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNE+LPVAVSAP++VG
Sbjct:   30 IGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEALSIEEWLYNGGPYQLVVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVIAIWLTSLGISTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEVLPVAVSAPSIVG 360
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BLAST of mRNA_P-fluviatile_contig89.14957.1 vs. uniprot
Match: PSBA_PHATC (Photosystem II protein D1 n=590 Tax=root TaxID=1 RepID=PSBA_PHATC)

HSP 1 Score: 641 bits (1654), Expect = 2.100e-231
Identity = 311/331 (93.96%), Postives = 322/331 (97.28%), Query Frame = 1 
Query:    1 IGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAVSAPAVVG 993
            IGWFGCLM PTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNII+GAVIPSSNAIGIHFYPIWEAASV+EWLYNGGPYQLIV HFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTA+GVSTMAFNLNGFNFNQSVVDS+GRVINTWADIINRADLGMEVMHERNAHNFPLDLAS E+LPVA++APAV G
Sbjct:   30 IGWFGCLMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIITGAVIPSSNAIGIHFYPIWEAASVDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESTNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWLTAMGVSTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEVLPVALTAPAVNG 360
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BLAST of mRNA_P-fluviatile_contig89.14957.1 vs. uniprot
Match: A0A023JEK8_9STRA (Photosystem II protein D1 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A023JEK8_9STRA)

HSP 1 Score: 630 bits (1624), Expect = 7.820e-227
Identity = 303/331 (91.54%), Postives = 319/331 (96.37%), Query Frame = 1 
Query:    1 IGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAVSAPAVVG 993
            IGWFGC+M PTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAV+PSSNAIGIH YPIWEAAS++EWLYNGGPYQLIV HF IGV  +MGREWELSYRLGMRPWIFVAFSAPVAAA+AVF+VYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES ++GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTA+G+STMAFNLNGFNFNQSVVDS+GRVINTWADIINRADLGMEVMHERNAHNFPLDLAS E+LPVA++APAV G
Sbjct:   30 IGWFGCVMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGIHLYPIWEAASIDEWLYNGGPYQLIVLHFFIGVCTYMGREWELSYRLGMRPWIFVAFSAPVAAAAAVFVVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESPDFGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWLTAMGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEVLPVALTAPAVNG 360
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BLAST of mRNA_P-fluviatile_contig89.14957.1 vs. uniprot
Match: A0A451FLR3_9STRA (Photosystem II protein D1 n=179 Tax=Eukaryota TaxID=2759 RepID=A0A451FLR3_9STRA)

HSP 1 Score: 629 bits (1623), Expect = 1.110e-226
Identity = 301/329 (91.49%), Postives = 318/329 (96.66%), Query Frame = 1 
Query:    1 IGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAVSAPAV 987
            IGWFG LMIP LLTA SC+II FIAAPPVDIDGIREPVAGSLLYGNNIISGA++PSSNAIGIHFYPIWEAAS++EWLYNGGPYQLIVFHFL+GVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET +  S NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTALG+STMAFNLNGFNFNQSVVDS+GRVINTWADI+NRA+LG+EVMHERNAHNFPLDLA + +LPVA++APAV
Sbjct:   30 IGWFGVLMIPLLLTATSCFIIGFIAAPPVDIDGIREPVAGSLLYGNNIISGAIVPSSNAIGIHFYPIWEAASLDEWLYNGGPYQLIVFHFLLGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETEDGVSANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAIWPVVGIWLTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGIEVMHERNAHNFPLDLAVSNVLPVALNAPAV 358
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BLAST of mRNA_P-fluviatile_contig89.14957.1 vs. uniprot
Match: A0A7S2RD40_9STRA (Photosystem II protein D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RD40_9STRA)

HSP 1 Score: 627 bits (1616), Expect = 2.020e-225
Identity = 301/331 (90.94%), Postives = 319/331 (96.37%), Query Frame = 1 
Query:    1 IGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAVSAPAVVG 993
            IGWFG +MIPTLLTA SC+II FIAAPPVDIDGIREPVAGSL+YGNNIISGAVIPSSNAIG+HFYPIWEAASV+EWLYNGGPYQLIV HFL+GVA +MGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET++ ES N GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPV+GIW+TA+G+STMAFNLNGFNFNQSVVDSEGRVINTWADI+NRADLG+EVMHERNAHNFPLDLA+ E+ PVAVSAPAV G
Sbjct:   42 IGWFGVVMIPTLLTATSCFIIGFIAAPPVDIDGIREPVAGSLMYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTDSESTNNGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVLGIWITAMGISTMAFNLNGFNFNQSVVDSEGRVINTWADILNRADLGIEVMHERNAHNFPLDLAAGEVFPVAVSAPAVNG 372
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BLAST of mRNA_P-fluviatile_contig89.14957.1 vs. uniprot
Match: PSBA_TRIAZ (Photosystem II protein D1 n=457 Tax=root TaxID=1 RepID=PSBA_TRIAZ)

HSP 1 Score: 619 bits (1595), Expect = 2.050e-222
Identity = 289/331 (87.31%), Postives = 319/331 (96.37%), Query Frame = 1 
Query:    1 IGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAVSAPAVVG 993
            IGWFG LMIPTL++A +C++IAFIAAPPVDIDGIREPVAGSLLYGNNIISGAV+PSSNAIG+HFYPIWEAAS++EWLYNGGPYQL++FHFLIGVAC++GREWELSYRLGMRPWI VAFSAPVAAA+AVFL+YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHM GVAGVFGGSLFSAMHGSLVTSSL+RET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSR+LHFFLAAWPV+GIW TALGVSTMAFNLNGFNFNQS++DS+GRVI TWAD+INRA+LGMEVMHERNAHNFPLDLA+ ++ PVA++AP + G
Sbjct:   30 IGWFGVLMIPTLVSAIACFVIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGVACYLGREWELSYRLGMRPWICVAFSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGVSTMAFNLNGFNFNQSIIDSQGRVIGTWADVINRANLGMEVMHERNAHNFPLDLAAGDVAPVALTAPPING 360
[Close]
BLAST of mRNA_P-fluviatile_contig89.14957.1 vs. uniprot
Match: A0A140KBD8_9CYAN (Photosystem II protein D1 n=7 Tax=Cyanobacteria TaxID=1117 RepID=A0A140KBD8_9CYAN)

HSP 1 Score: 618 bits (1593), Expect = 4.130e-222
Identity = 285/331 (86.10%), Postives = 318/331 (96.07%), Query Frame = 1 
Query:    1 IGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAVSAPAVVG 993
            +GWFG LMIPTLLTA +C+IIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAV+PSSNAIG+HFYPIWEAAS++EWLYNGGPYQL+VFHFLIG+ CWMGR+WELSYRLGMRPWI VA+SAPV+AA+AVFL+YP+GQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHM GVAGVFGGSLFSAMHGSLVTSSL+RET+E ES+NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSR+LHFFL AWPV+GIW TA+G+STMAFNLNGFNFNQS++DS+G V+NTWADI+NRA+LG EVMHERNAHNFPLDLAS +I PVA++APA+ G
Sbjct:   30 VGWFGVLMIPTLLTATTCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVVFHFLIGIFCWMGRQWELSYRLGMRPWICVAYSAPVSAATAVFLIYPLGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESLNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLGAWPVIGIWFTAMGISTMAFNLNGFNFNQSIMDSQGHVVNTWADILNRANLGFEVMHERNAHNFPLDLASGDIAPVALTAPAING 360
[Close]
BLAST of mRNA_P-fluviatile_contig89.14957.1 vs. uniprot
Match: UPI000934559B (photosystem II q(b) protein n=1 Tax=Spirulina major TaxID=270636 RepID=UPI000934559B)

HSP 1 Score: 617 bits (1590), Expect = 1.180e-221
Identity = 289/331 (87.31%), Postives = 318/331 (96.07%), Query Frame = 1 
Query:    1 IGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAVSAPAVVG 993
            +GWFG LMIPTLLTA +C+IIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAV+PSSNAIG+HFYPIWEAAS++EWLYNGGPYQL++FHFLIG+ C+MGR+WELSYRLGMRPWI VA+SAPV+AASAVFL+YP+GQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHM GVAGVFGG+LFSAMHGSLVTSSL+RET+E+ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFL AWPV+GIW TALGVSTMAFNLNGFNFNQSV+DS+GRVINTWADI+NRA+LG EVMHERNAHNFPLDLAS E  PVA++APA+ G
Sbjct:   30 VGWFGVLMIPTLLTATTCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGIFCYMGRQWELSYRLGMRPWICVAYSAPVSAASAVFLIYPMGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMLGVAGVFGGALFSAMHGSLVTSSLVRETTEIESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGAWPVIGIWFTALGVSTMAFNLNGFNFNQSVLDSQGRVINTWADILNRANLGFEVMHERNAHNFPLDLASAESAPVALTAPAING 360
[Close]
BLAST of mRNA_P-fluviatile_contig89.14957.1 vs. uniprot
Match: A0A5P8VR66_9NOSO (Photosystem II protein D1 n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A5P8VR66_9NOSO)

HSP 1 Score: 615 bits (1586), Expect = 4.820e-221
Identity = 287/331 (86.71%), Postives = 317/331 (95.77%), Query Frame = 1 
Query:    1 IGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAVSAPAVVG 993
            IGWFG +MIPTLL A +C++IAFIAAPPVDIDGIREPVAGSL+YGNNIISGAV+PSSNAIG+HFYPIWEAAS++EWLYNGGPYQL++FHFLIGV C++GREWELSYRLGMRPWI +A+SAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH  GVAGVFGGSLFSAMHGSLVTSSL+RET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSR+LHFFLAAWPV+GIW TALGVSTMAFNLNGFNFNQS++DS GRVI+TWAD+INRA+LGMEVMHERNAHNFPLDLA+ ++ PVA++APA+ G
Sbjct:   30 IGWFGVVMIPTLLAATACFVIAFIAAPPVDIDGIREPVAGSLIYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLVIFHFLIGVFCYLGREWELSYRLGMRPWIAIAYSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGSLFSAMHGSLVTSSLVRETTETESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGVSTMAFNLNGFNFNQSIIDSSGRVISTWADVINRANLGMEVMHERNAHNFPLDLAAGDVAPVALTAPAING 360
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig89.14957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBA_ECTSI1.110e-24298.79Photosystem II protein D1 n=1129 Tax=Eukaryota Tax... [more]
A0A1N7TJI8_9PHAE3.710e-24196.98Photosystem II protein D1 n=412 Tax=Eukaryota TaxI... [more]
PSBA_PHATC2.100e-23193.96Photosystem II protein D1 n=590 Tax=root TaxID=1 R... [more]
A0A023JEK8_9STRA7.820e-22791.54Photosystem II protein D1 n=4 Tax=Bacillariophyta ... [more]
A0A451FLR3_9STRA1.110e-22691.49Photosystem II protein D1 n=179 Tax=Eukaryota TaxI... [more]
A0A7S2RD40_9STRA2.020e-22590.94Photosystem II protein D1 n=1 Tax=Rhizochromulina ... [more]
PSBA_TRIAZ2.050e-22287.31Photosystem II protein D1 n=457 Tax=root TaxID=1 R... [more]
A0A140KBD8_9CYAN4.130e-22286.10Photosystem II protein D1 n=7 Tax=Cyanobacteria Ta... [more]
UPI000934559B1.180e-22187.31photosystem II q(b) protein n=1 Tax=Spirulina majo... [more]
A0A5P8VR66_9NOSO4.820e-22186.71Photosystem II protein D1 n=6 Tax=Cyanobacteria Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig89contigP-fluviatile_contig89:32756..33794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score656.0
Seed ortholog evalue9.3e-186
Seed eggNOG ortholog2880.D1J6Z2
Preferred namepsbA
KEGG koko:K02703
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
EggNOG OGs28IP8@1,2QR09@2759
EC1.10.3.9
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Hectar predicted targeting categorysignal peptide
Exons1
Model size1039
Cds size975
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig89.14957.1prot_P-fluviatile_contig89.14957.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig89 32777..33751 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.3338675-UTR-P-fluviatile_contig89:32755..327761622817299.3338675-UTR-P-fluviatile_contig89:32755..32776Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 32756..32776 +
1693571984.5239968-UTR-P-fluviatile_contig89:32755..327761693571984.5239968-UTR-P-fluviatile_contig89:32755..32776Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 32756..32776 +
1622817299.3558002-UTR-P-fluviatile_contig89:33751..337941622817299.3558002-UTR-P-fluviatile_contig89:33751..33794Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 33752..33794 +
1693571984.5452595-UTR-P-fluviatile_contig89:33751..337941693571984.5452595-UTR-P-fluviatile_contig89:33751..33794Porterinema fluviatile SAG_2381UTRP-fluviatile_contig89 33752..33794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817299.3455615-CDS-P-fluviatile_contig89:32776..337511622817299.3455615-CDS-P-fluviatile_contig89:32776..33751Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 32777..33751 +
1693571984.5359714-CDS-P-fluviatile_contig89:32776..337511693571984.5359714-CDS-P-fluviatile_contig89:32776..33751Porterinema fluviatile SAG_2381CDSP-fluviatile_contig89 32777..33751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig89.14957.1

>prot_P-fluviatile_contig89.14957.1 ID=prot_P-fluviatile_contig89.14957.1|Name=mRNA_P-fluviatile_contig89.14957.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=325bp
MIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSS
NAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYR
LGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVF
QAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYG
YKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLT
ALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNA
HNFPLDLASNEILPVAVSAPAVVG*
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mRNA from alignment at P-fluviatile_contig89:32756..33794+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig89.14957.1 ID=mRNA_P-fluviatile_contig89.14957.1|Name=mRNA_P-fluviatile_contig89.14957.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1039bp|location=Sequence derived from alignment at P-fluviatile_contig89:32756..33794+ (Porterinema fluviatile SAG_2381)
ATTGGTTGGTTTGGTTGTTTAATGATCCCTACGTTATTAACAGCAGCTTC
TTGTTACATCATCGCTTTCATCGCAGCACCGCCTGTAGATATCGATGGTA
TTCGTGAGCCTGTAGCTGGATCTTTATTATATGGTAACAACATCATCAGT
GGTGCTGTTATACCTAGCTCAAACGCAATTGGTATTCATTTCTACCCAAT
CTGGGAAGCTGCTTCAGTTGAAGAGTGGTTATACAACGGTGGTCCTTACC
AATTAATCGTATTCCATTTCTTAATTGGTGTTGCTTGTTGGATGGGTCGT
GAGTGGGAACTTAGCTACCGTTTAGGTATGCGTCCATGGATTTTCGTAGC
ATTCTCTGCTCCTGTAGCAGCGGCATCTGCAGTATTCTTAGTTTACCCTA
TCGGTCAAGGTAGCTTCTCTGATGGTATGCCATTAGGTATTTCTGGTACA
TTTAACTTCATGATCGTTTTCCAAGCTGAACATAACATTTTAATGCACCC
ATTCCATATGGCTGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCAGTG
CTATGCACGGATCTTTAGTAACTTCAAGTTTAATTCGTGAAACAAGCGAA
GTTGAATCTGTTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTA
CAACATCGTAGCTGCTCACGGTTACTTTGGACGTTTAATTTTCCAATATG
CTAGTTTCAACAACTCTAGAGCTTTACATTTCTTCCTTGCAGCATGGCCT
GTAGTTGGAATTTGGTTAACAGCTTTAGGTGTAAGCACTATGGCATTCAA
CTTAAACGGTTTTAACTTCAACCAATCTGTTGTTGATAGCGAAGGTCGTG
TTATTAACACATGGGCTGACATCATCAACCGTGCAGATTTAGGTATGGAA
GTAATGCACGAACGTAACGCTCATAACTTCCCATTAGATTTAGCATCTAA
CGAGATTTTACCAGTTGCAGTTTCTGCACCTGCAGTTGTAGGTTAATCAT
CGATAAAGAAAAATAACTTGTAATAAAATTTTTGGACTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig89:32756..33794+

>mRNA_P-fluviatile_contig89.14957.1 ID=mRNA_P-fluviatile_contig89.14957.1|Name=mRNA_P-fluviatile_contig89.14957.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1950bp|location=Sequence derived from alignment at P-fluviatile_contig89:32756..33794+ (Porterinema fluviatile SAG_2381)
ATGATCCCTACGTTATTAACAGCAGCTTCTTGTTACATCATCGCTTTCAT
CGCAGCACCGCCTGTAGATATCGATGGTATTCGTGAGCCTGTAGCTGGAT
CTTTATTATATGGTAACAACATCATCAGTGGTGCTGTTATACCTAGCTCA
AACGCAATTGGTATTCATTTCTACCCAATCTGGGAAGCTGCTTCAGTTGA
AGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTATTCCATTTCT
TAATTGGTGTTGCTTGTTGGATGGGTCGTGAGTGGGAACTTAGCTACCGT
TTAGGTATGCGTCCATGGATTTTCGTAGCATTCTCTGCTCCTGTAGCAGC
GGCATCTGCAGTATTCTTAGTTTACCCTATCGGTCAAGGTAGCTTCTCTG
ATGGTATGCCATTAGGTATTTCTGGTACATTTAACTTCATGATCGTTTTC
CAAGCTGAACATAACATTTTAATGCACCCATTCCATATGGCTGGTGTTGC
TGGTGTTTTCGGTGGTTCATTATTCAGTGCTATGCACGGATCTTTAGTAA
CTTCAAGTTTAATTCGTGAAACAAGCGAAGTTGAATCTGTTAACTACGGT
TACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCTCACGG
TTACTTTGGACGTTTAATTTTCCAATATGCTAGTTTCAACAACTCTAGAG
CTTTACATTTCTTCCTTGCAGCATGGCCTGTAGTTGGAATTTGGTTAACA
GCTTTAGGTGTAAGCACTATGGCATTCAACTTAAACGGTTTTAACTTCAA
CCAATCTGTTGTTGATAGCGAAGGTCGTGTTATTAACACATGGGCTGACA
TCATCAACCGTGCAGATTTAGGTATGGAAGTAATGCACGAACGTAACGCT
CATAACTTCCCATTAGATTTAGCATCTAACGAGATTTTACCAGTTGCAGT
TTCTGCACCTGCAGTTGTAGGTTAAATGATCCCTACGTTATTAACAGCAG
CTTCTTGTTACATCATCGCTTTCATCGCAGCACCGCCTGTAGATATCGAT
GGTATTCGTGAGCCTGTAGCTGGATCTTTATTATATGGTAACAACATCAT
CAGTGGTGCTGTTATACCTAGCTCAAACGCAATTGGTATTCATTTCTACC
CAATCTGGGAAGCTGCTTCAGTTGAAGAGTGGTTATACAACGGTGGTCCT
TACCAATTAATCGTATTCCATTTCTTAATTGGTGTTGCTTGTTGGATGGG
TCGTGAGTGGGAACTTAGCTACCGTTTAGGTATGCGTCCATGGATTTTCG
TAGCATTCTCTGCTCCTGTAGCAGCGGCATCTGCAGTATTCTTAGTTTAC
CCTATCGGTCAAGGTAGCTTCTCTGATGGTATGCCATTAGGTATTTCTGG
TACATTTAACTTCATGATCGTTTTCCAAGCTGAACATAACATTTTAATGC
ACCCATTCCATATGGCTGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTC
AGTGCTATGCACGGATCTTTAGTAACTTCAAGTTTAATTCGTGAAACAAG
CGAAGTTGAATCTGTTAACTACGGTTACAAATTCGGACAAGAAGAAGAAA
CTTACAACATCGTAGCTGCTCACGGTTACTTTGGACGTTTAATTTTCCAA
TATGCTAGTTTCAACAACTCTAGAGCTTTACATTTCTTCCTTGCAGCATG
GCCTGTAGTTGGAATTTGGTTAACAGCTTTAGGTGTAAGCACTATGGCAT
TCAACTTAAACGGTTTTAACTTCAACCAATCTGTTGTTGATAGCGAAGGT
CGTGTTATTAACACATGGGCTGACATCATCAACCGTGCAGATTTAGGTAT
GGAAGTAATGCACGAACGTAACGCTCATAACTTCCCATTAGATTTAGCAT
CTAACGAGATTTTACCAGTTGCAGTTTCTGCACCTGCAGTTGTAGGTTAA
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