mRNA_P-fluviatile_contig87.14920.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig87.14920.1
Unique NamemRNA_P-fluviatile_contig87.14920.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig87.14920.1 vs. uniprot
Match: D8LKA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA3_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 6.560e-68
Identity = 173/279 (62.01%), Postives = 184/279 (65.95%), Query Frame = 1 
Query:    1 MGEFSQNRAAWLIAGFLGRKFMKDLLGRWSVLPVLAVACCLWNKWRSSQLEGKLEQAKLEEVRRSTRRQLQLLRTRSASGAPPSAGHSSERR------------PGDRLGGIPTSSLSTMPEQQRAQRQHLSPTAVXXXXXXXXXXXXXXXXXXXXXXXXXXVPAPKDALASELWAWLGGVGSGR-SCNADRPSRSRGGEGGAAAGGRG-AGEWRGAFHNRMGNLPRRNAFKTARGKVYLRDGRRGXXXXXSRSCLLA---GGLEPVREEDESGVATAT 786
            MGEF  NRAAWLIAGFLGRKFMKD LGRWSV+PVLAVA CLWNKWR+ QLEGKLEQ KLEEVRRSTRRQLQLLR                              PGDRLGGIP++S+ST                       XXXXXXXXXXXXXXXXXXXX  APKDALASELWAWLGGVGSGR SC+ADRP  S     G        +GEWRGAF+NRMGNLPRRNAFKTARGKVYLR GR G     +R  + A   GGL  VREEDE GVA  +
Sbjct:    1 MGEFGSNRAAWLIAGFLGRKFMKDFLGRWSVIPVLAVAACLWNKWRARQLEGKLEQCKLEEVRRSTRRQLQLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDRLGGIPSASISTXXXXXXXXXXXXX----------XXXXXXXXXXXXXXXXXXXXXAAPKDALASELWAWLGGVGSGRRSCSADRPKCSSSPRSGXXXXXXXXSGEWRGAFYNRMGNLPRRNAFKTARGKVYLRGGRIGSGG--TREGVQAPPLGGLASVREEDE-GVAVVS 266
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig87.14920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKA3_ECTSI6.560e-6862.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig87contigP-fluviatile_contig87:27166..32177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_009520.1
Exons4
Model size2406
Cds size807
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig87.14920.1prot_P-fluviatile_contig87.14920.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig87 28765..32177 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817295.4900606-UTR-P-fluviatile_contig87:27165..287641622817295.4900606-UTR-P-fluviatile_contig87:27165..28764Porterinema fluviatile SAG_2381UTRP-fluviatile_contig87 27166..28764 -
1693571974.2057567-UTR-P-fluviatile_contig87:27165..287641693571974.2057567-UTR-P-fluviatile_contig87:27165..28764Porterinema fluviatile SAG_2381UTRP-fluviatile_contig87 27166..28764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817295.501776-CDS-P-fluviatile_contig87:28764..289521622817295.501776-CDS-P-fluviatile_contig87:28764..28952Porterinema fluviatile SAG_2381CDSP-fluviatile_contig87 28765..28952 -
1693571974.216063-CDS-P-fluviatile_contig87:28764..289521693571974.216063-CDS-P-fluviatile_contig87:28764..28952Porterinema fluviatile SAG_2381CDSP-fluviatile_contig87 28765..28952 -
1622817295.512354-CDS-P-fluviatile_contig87:30048..304841622817295.512354-CDS-P-fluviatile_contig87:30048..30484Porterinema fluviatile SAG_2381CDSP-fluviatile_contig87 30049..30484 -
1693571974.2260683-CDS-P-fluviatile_contig87:30048..304841693571974.2260683-CDS-P-fluviatile_contig87:30048..30484Porterinema fluviatile SAG_2381CDSP-fluviatile_contig87 30049..30484 -
1622817295.5234642-CDS-P-fluviatile_contig87:31675..317891622817295.5234642-CDS-P-fluviatile_contig87:31675..31789Porterinema fluviatile SAG_2381CDSP-fluviatile_contig87 31676..31789 -
1693571974.2434509-CDS-P-fluviatile_contig87:31675..317891693571974.2434509-CDS-P-fluviatile_contig87:31675..31789Porterinema fluviatile SAG_2381CDSP-fluviatile_contig87 31676..31789 -
1622817295.5388079-CDS-P-fluviatile_contig87:32108..321771622817295.5388079-CDS-P-fluviatile_contig87:32108..32177Porterinema fluviatile SAG_2381CDSP-fluviatile_contig87 32109..32177 -
1693571974.2615564-CDS-P-fluviatile_contig87:32108..321771693571974.2615564-CDS-P-fluviatile_contig87:32108..32177Porterinema fluviatile SAG_2381CDSP-fluviatile_contig87 32109..32177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig87.14920.1

>prot_P-fluviatile_contig87.14920.1 ID=prot_P-fluviatile_contig87.14920.1|Name=mRNA_P-fluviatile_contig87.14920.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=269bp
MGEFSQNRAAWLIAGFLGRKFMKDLLGRWSVLPVLAVACCLWNKWRSSQL
EGKLEQAKLEEVRRSTRRQLQLLRTRSASGAPPSAGHSSERRPGDRLGGI
PTSSLSTMPEQQRAQRQHLSPTAVAAAAAAAAAASGSTDKKSSISAAAAA
VPAPKDALASELWAWLGGVGSGRSCNADRPSRSRGGEGGAAAGGRGAGEW
RGAFHNRMGNLPRRNAFKTARGKVYLRDGRRGGGGGSSRSCLLAGGLEPV
REEDESGVATATATAAAS*
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mRNA from alignment at P-fluviatile_contig87:27166..32177-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig87.14920.1 ID=mRNA_P-fluviatile_contig87.14920.1|Name=mRNA_P-fluviatile_contig87.14920.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5012bp|location=Sequence derived from alignment at P-fluviatile_contig87:27166..32177- (Porterinema fluviatile SAG_2381)
ATGGGAGAGTTCTCACAGAACCGGGCAGCGTGGCTGATAGCAGGGTTCCT
CGGGCGGAAGTTTATGAAGGTGAGACGCTTGGAGCATGCAAGAGAGGAGA
CGCACGTTTTTGAGCGACACGCACCGACGACGGTCAGAGAACAGCAGTGA
ATGAAATGTTCGCTCGCAATTACCAATAATGCATCCTCTCAACAGCATCG
CACACACCAGCACTTGAGGGCATTGTCTTGCGCTTGAGCAGTTGAATCCG
GCCTCTCATACTGATTGTTCTCCCTCCCTCTCAGGCTCTGTAACGCGAAT
GCGGCTATGGCCGCTGTCTCATCAACGCTTCATTCGGTGTTGCCCCGTCA
CCCCCTCCCCCCTCGAATTTGAACCCTAATTTTTTCAGGATTTGCTTGGA
CGATGGAGTGTGCTCCCGGTGTTGGCCGTGGCTTGCTGCCTATGGAACAA
GTGGAGATCGAGCCAGCTTGAGGGGAAGCTAGAGCAGGCCAAGCTTGAGG
AGGTGAGAGCCCGCGACTCTTGCTTGATCTTCGTGCTGCTCCAAATGATG
GAAAACGTTTTTTTTTTTGCCGTCTGTGACGCGCCTCCCACTCCGGCGAC
CGTCGACCGCGACGTCACCATCTCTTGTTTTATGCGAGAATTTGAATCCT
CTCCCTCCTGTTCCCCCCCCTCTCTTTAGAACTCGAAGCGATGACGTCTT
ACCCACAGTCACGAAATTCGTTGTTCAGATCTACGCGGGCTTGCCCAGCC
TTGCCCCGTGCCTATGAAACTTTCTGCGCATGTAGTGGAGGTCCAGACCT
GGATCCGAAAATCGACACACGCGCAGCTGCTGCAGTGACACCGTCTCCCC
TCCCTCGCTCTCTCAACTCTCTATCTCGCTCTTTGTCTCTCTCGGATCTC
CGCTGCCCACCGCACCACGCTCTCGCTGTTGCTCACTCACCCTGACTAGC
TATTTTGTCTCACCTCCCCTCAACTTGCATTGGGTGGTTCTTGGGCCGAG
GTTGAGTGCGTACTGGCTTTGCGATCGAGCGCGTTTTCCCCTCAAAATCA
CCGCCTGTGCCCTGTTGTTTCGCCGTTGCACGGTACACATCGGCTGTTTG
ACACGGGCGGCGGCTGCCTCTCTTCTGAGTGCACCATTTCTGTCCGTGGG
TCCAATTCTTCGCGTTGATAGCCCAGAGCTACGACGACGTTCAACACGAT
CGATGGATGGATTCACTCAAATGGCGCGTCTGAGATTTGTTGTTTCTGCG
AGCCCTCGCGTTCCCCGCGACGGCTCTCGTTGGACTTGGACGTCGTCTTC
TAGATAACCCCCTCGCCAGGCGTTGATGGCTGCTGTGTTTGTTTTAGTCC
CGCCGCAAGTTTGCGCCGAGCAGGGATTTTCACGGCATCTGGGGACCCAC
TCACGCAGAGCGCGTATGCCGCGGGAGTCCAATGTTGGCTCAGTTTCAAG
CGTGTTCTCATTCACCGAGGATTTTGCGGTTTTGCTGTCGTCGGCCAAGC
TTTTGCTAATCTCGTCTCGAGCAAATCACGTGTAAGATGAACAAGACCTG
GTCATGCATTGGCAACTGCTGCTCATGCAGGGCTGGTGTACATTTTGTTT
GGGAGTCTCCTCTCTCTGCAATCTTTGCTTCGATTGTTTTTGTTTTTTTT
TCATGTTCGAGCGCTCTCGCTGCCCCCCCCCCCGCACCCTCAGGTTCGGC
GGAGCACCCGGCGACAACTGCAGCTTTTGAGGACAAGATCAGCATCGGGG
GCCCCGCCATCAGCAGGCCATAGCAGCGAGAGGCGGCCGGGCGATCGACT
CGGAGGCATTCCGACCTCCTCACTCTCCACCATGCCGGAGCAGCAGCGAG
CACAGCGGCAGCACCTGTCTCCTACCGCCGTCGCCGCTGCCGCTGCTGCC
GCCGCCGCTGCCAGCGGGAGCACCGACAAAAAGAGCAGCATCAGTGCAGC
AGCAGCAGCAGTGCCAGCGCCCAAGGATGCTCTGGCCTCGGAGCTGTGGG
CTTGGCTCGGGGGTGTCGGGTCGGGGCGATCATGCAACGCCGACCGTCCC
TCGCGATCTCGGGGGGGAGAAGGGGGCGCCGCCGCCGGGGGGCGGGGTGC
GGGCGAGTGGAGGGGCGCATTTCACAACCGTGAGTGTTATACGTGTGTGT
AATTGATCGGCGGATTTTCTGTGCTGTGTCGTGTCGTGTGAGGTGGTCGA
GTTGATTTGGAGCACGCACACACAGATAGACGGACCGACCGACAAGAATC
AGGGAGTCAGGAAGGCAAGTAAACAGACAGCCGGACGGACGAACTGACAA
ACAGGCAGGCAGAGATCGAGACAGAAAAAGGTGGCAAGTGAACTGGCGGT
TGTGACGAAAATGCGATCGCACGGTCGCTGTGGCTGTCGTTATTTATGCC
TCAGTACTGTTGTTCCATACTGTATTCTTCAGTTGGCTATTAGTCCTCCC
TGTTTTCTTGAACTGGCTACCTATTGGGCATGAGTATAAGTCCGAGCCAA
AGGGGAGCAACGCAGTCAACATAAACGAAGAATCAAATACCAAAACACGA
CGCAAAGCAGTCATCGCGGGTTTATCTCCCCTCGCCAGCACATCAAAAGA
AACAGCTGGTGTGTGTGTGTACCCTCCGCGAACGATCGTCGTCGGCGATA
GGCAATGCGCTCCGATCGGCCGTAACCACGTGTGTCGCGCTGTTCCACGT
TCCAAACTGGGCGGAAGCTCCCCCGTAGAACTCCGCAAAGAAGGCGACAG
GCAGCACGCTCTGCAACATCACTGGGCGCAGATGGATGCCTCTGACCTGC
CTTCCTGAAGCGAGCTCGGTCCCTGTGACCAACGACTTATCCAAGAGCGC
AGACTATTTCGAAAGGGTGGAAATATAAATAGCAGGACCCACGTAGCTTA
TGGAAACTTCCTTGTCAGAGAATTCCGATGGATTCACGAAAACGCCCGAA
GGATCCGGCAATTAATCTCCCCGTCACTTCGGATATACATGCCAGGCCAA
GTAGCACCAAAATTGTGGGTGTACTCATCGTGGCGCTGTGACCTTGGTTT
ATGCTTACGGTCTTCTCTGCCTCCCTCTTTGTCCCTGGACTGCCTTAGGT
TTGCTATCTGGTAGCCGTCTCGATCCTCGCGGAACAACGCTCAACCTTCG
CTGCGCGTGCCTCACCCGTCTGCCTCCCTCCCTCACCCACTCACTCACTC
CCTAACTCCCTCACTCTCTCGACAGGCATGGGCAACCTCCCGCGACGAAA
CGCCTTCAAGACCGCGCGGGGCAAGGTCTACTTGCGAGACGGCCGCAGGG
GCGGTGGCGGAGGTTCGTCTCGGTCATGCTTGCTCGCCGGCGGGTTGGAG
CCTGTGCGGGAAGAGGACGAGTCGGGCGTCGCCACCGCCACCGCCACCGC
CGCCGCGTCTTGATGATGGCGTCGCGTCGAGAGACTGTCCATCCAGCCGC
ACCTCGCTGTCCGTTCGTTGTCGATCGCGACGGGCTTCTTGGTGTTGCTT
TTGCATGGCAGGGACGTTTATTAGAAGAAGGGGAGACTGTAGGAAAGAAT
TCAGAGACGAGGACTGTGTTTCGGTGTGTTTTTTATGGAATGGATGTGGG
TGTGTACGCGCGTGAGTTCTTGTAGTGTTACGGATTGCTCGGCTTGTTTT
CCGGCGTTAGCTTGGGGAACAATTTTCAGGGGGCAAGTGTTCGGGGAGCT
TCGCCTGGCGGGTGTAAACGGATATCGTATCTTTTCTCTCTTCCTCTGGA
CGTATAGGGCACCCCCCTCCTGCCCGTTACCCCCCTTGGTTGACAAGCTC
GACATGAACAGATATCTCACGTAGCTGACGGTTCATTCAGAACCTTCGTA
CATTGTGGTCGTTTCTTGTGGTCGCCTTCGATGGTTTTTGCTGCATGCCC
CCACAGCTCTTGCATACTTCCTATGCGTGCTCACCACGACTGTCTGGTTG
CACACTCCCCCCCTTTCCCGTCAAGCGTTCGAAAGGGGGTAGGACGCACA
GGGGAAGGCGTTCCGTCGCGCCGCTTTAACTGCTGCCGGTTCAAATCACC
ACGGCTGCAGCAGCTCGGTTAATGTGTTCAAGTTTGGTTCATATTGGATG
TGAGTCTAACCGGGTGGTCTTGTTGGTCTTGCTATTATCTTCGCCGCGAA
GTCGCTCCTCGTGGCGACTACTGCAAAAGTGGTCGGAATGTTGGCGAGAA
GAGGAAGGGCGGGGGGCACCGCATTGGCCGCATCTGGTATGTTCCAAATT
TGAGGGGGGGGAACCCTCCCTTGGCGTCGTGCAGTATCTTTCAAAATTTC
GGGTCTTTCGAGAACTTCACCTAAGTTGATTTCTTGGTAGCTGCCAGGAT
GCGTGCGTCTCATCACAGCGAAGAGAGCGGTACGATGGGTGAAGCACGGA
GGTCGTGGTGGATAGCTGGCGGGTTCTCGACCTTAGACAAACGTGGTAAC
AACCGTGGTTTGTTGCACTGCATTTTTGAATGCTCATGCAGGATTTTCGT
CGAGATCATACAGTGGACGCGTGCTCCACAACTGCGGTCGTCGTTGCCTT
GGCCTGAGTCGTGTCTAGCTGAGTTGAATTCATCGTCCAGGAGGTGTTCC
CAAGTGATGTTGGATAGTTACGAAAGAATCAACGCCATCTTGCACATGCT
GCATCTAGGAACAAGGGTGTCTCTCGTCTTTCCGAAGTACTCTACCACAT
GATTAATGAGTTCAAAAAAACAGTCTCAAAAGGTTAGGCAGGCAACCCGA
CGTGTCAACGCTGCGATTTGGAAGGGACTCCGTGGCCCAGTGTGATGTAA
GGGCGCGTTTTTCAGTGCAAAAGATCAAGGCAGGTTGGCGTGCGCGTTGT
GGGCGGCGCACATCTGCCATGGTGCAGGCAGCCTCGCACGTGTGCGAGGG
ACACGGGTGCACGCGCGCGCAGCCCTGCGCGTAAAAACTCATATCGCCCA
GCATATCGCAGCCCGACCCTGCGCAAGTGCCGCACCGTGGCCTTTCAAAA
TTTTGTCATGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig87:27166..32177-

>mRNA_P-fluviatile_contig87.14920.1 ID=mRNA_P-fluviatile_contig87.14920.1|Name=mRNA_P-fluviatile_contig87.14920.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1614bp|location=Sequence derived from alignment at P-fluviatile_contig87:27166..32177- (Porterinema fluviatile SAG_2381)
ATGGGAGAGTTCTCACAGAACCGGGCAGCGTGGCTGATAGCAGGGTTCCT
CGGGCGGAAGTTTATGAAGATGGGAGAGTTCTCACAGAACCGGGCAGCGT
GGCTGATAGCAGGGTTCCTCGGGCGGAAGTTTATGAAGGATTTGCTTGGA
CGATGGAGTGTGCTCCCGGTGTTGGCCGTGGCTTGCTGCCTATGGAACAA
GTGGAGATCGAGCCAGCTTGAGGGGAAGCTAGAGCAGGCCAAGCTTGAGG
AGGATTTGCTTGGACGATGGAGTGTGCTCCCGGTGTTGGCCGTGGCTTGC
TGCCTATGGAACAAGTGGAGATCGAGCCAGCTTGAGGGGAAGCTAGAGCA
GGCCAAGCTTGAGGAGGTTCGGCGGAGCACCCGGCGACAACTGCAGCTTT
TGAGGACAAGATCAGCATCGGGGGCCCCGCCATCAGCAGGCCATAGCAGC
GAGAGGCGGCCGGGCGATCGACTCGGAGGCATTCCGACCTCCTCACTCTC
CACCATGCCGGAGCAGCAGCGAGCACAGCGGCAGCACCTGTCTCCTACCG
CCGTCGCCGCTGCCGCTGCTGCCGCCGCCGCTGCCAGCGGGAGCACCGAC
AAAAAGAGCAGCATCAGTGCAGCAGCAGCAGCAGTGCCAGCGCCCAAGGA
TGCTCTGGCCTCGGAGCTGTGGGCTTGGCTCGGGGGTGTCGGGTCGGGGC
GATCATGCAACGCCGACCGTCCCTCGCGATCTCGGGGGGGAGAAGGGGGC
GCCGCCGCCGGGGGGCGGGGTGCGGGCGAGTGGAGGGGCGCATTTCACAA
CCGTTCGGCGGAGCACCCGGCGACAACTGCAGCTTTTGAGGACAAGATCA
GCATCGGGGGCCCCGCCATCAGCAGGCCATAGCAGCGAGAGGCGGCCGGG
CGATCGACTCGGAGGCATTCCGACCTCCTCACTCTCCACCATGCCGGAGC
AGCAGCGAGCACAGCGGCAGCACCTGTCTCCTACCGCCGTCGCCGCTGCC
GCTGCTGCCGCCGCCGCTGCCAGCGGGAGCACCGACAAAAAGAGCAGCAT
CAGTGCAGCAGCAGCAGCAGTGCCAGCGCCCAAGGATGCTCTGGCCTCGG
AGCTGTGGGCTTGGCTCGGGGGTGTCGGGTCGGGGCGATCATGCAACGCC
GACCGTCCCTCGCGATCTCGGGGGGGAGAAGGGGGCGCCGCCGCCGGGGG
GCGGGGTGCGGGCGAGTGGAGGGGCGCATTTCACAACCGCATGGGCAACC
TCCCGCGACGAAACGCCTTCAAGACCGCGCGGGGCAAGGTCTACTTGCGA
GACGGCCGCAGGGGCGGTGGCGGAGGTTCGTCTCGGTCATGCTTGCTCGC
CGGCGGGTTGGAGCCTGTGCGGGAAGAGGACGAGTCGGGCGTCGCCACCG
CCACCGCCACCGCCGCCGCGTCTTGAGCATGGGCAACCTCCCGCGACGAA
ACGCCTTCAAGACCGCGCGGGGCAAGGTCTACTTGCGAGACGGCCGCAGG
GGCGGTGGCGGAGGTTCGTCTCGGTCATGCTTGCTCGCCGGCGGGTTGGA
GCCTGTGCGGGAAGAGGACGAGTCGGGCGTCGCCACCGCCACCGCCACCG
CCGCCGCGTCTTGA
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