mRNA_P-fluviatile_contig80.14751.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig80.14751.1
Unique NamemRNA_P-fluviatile_contig80.14751.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig80.14751.1 vs. uniprot
Match: A0A6H5JMH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH8_9PHAE)

HSP 1 Score: 541 bits (1395), Expect = 3.000e-185
Identity = 307/415 (73.98%), Postives = 337/415 (81.20%), Query Frame = 1
Query:  181 AVSAFGFGGGLPQQ-SLSRSLRWVGVAGRGEGQALHLARDAKLRSRAPAPPKDAEALPATGRRRSAFVVEGGG-HPAAASMTKDWRDLSVEEETVLCEQIIENRRVQDLQLELERKQSRPVTVHEWAVAAGHPSAHQLMAALQEGRKAQRTMVLCHQGLVRSVAFRYKQITRSLSLEDLVQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIAGKDRLVRVPVHAQDTAMRILAASHALQLEDPEGSPPTDAQLALALSIPEASIALYRKSYLPQNVADLDDAGLAGGXXXXXXXXXXXXXXXXVGGERWPWETARLAQAHVVRRDMMRAMAACLSPAEERALRLRFGLGAGEKEGAGGEAGGALTFKEIGRTMELSAEGIRKMVFRAIAKLQASDEANVLLLAYADLL 1419
            AV AFG+ G L QQ S SRSLR    AG G G           R R P+ P   +AL AT RRR+AFVVEGGG +P  +S T DWRDL+ EEET LCE I+ENRR+QDLQ+ELERK+SRPVTV EWAVAAGHPSAHQLMAALQEGRKAQRT+ LCHQGLVRSVA+RYKQ++R+LSL+DL QEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIA KDRLVRVPVHAQD AMRILAASHALQLE   G  PTDAQLA+AL +PEAS+ALYRKS LPQN+ADLD++ L+G                 VGGE+WPWE ++LAQA+VVRRDMMRAM ACLSP EERALRLRFGLG  EKEGA G  GGALTFKEIGRTMELSAEGIRKMVFR+IAKLQASDEAN LLLAYADL+
Sbjct:   39 AVCAFGYVGVLSQQQSSSRSLR---PAGGGRGGIR--------RPRVPSSPAQEKALFATARRRNAFVVEGGGANPVTSSSTADWRDLTKEEETALCELIVENRRIQDLQVELERKESRPVTVQEWAVAAGHPSAHQLMAALQEGRKAQRTLALCHQGLVRSVAYRYKQVSRNLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDAAMRILAASHALQLES-GGDVPTDAQLAVALGMPEASVALYRKSLLPQNIADLDNSALSGSPQGRAAGGGSRGGR--VGGEQWPWEASQLAQAYVVRRDMMRAMQACLSPTEERALRLRFGLGGAEKEGAAGGGGGALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYADLI 439          
BLAST of mRNA_P-fluviatile_contig80.14751.1 vs. uniprot
Match: D7FPW8_ECTSI (RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW8_ECTSI)

HSP 1 Score: 501 bits (1289), Expect = 3.990e-170
Identity = 269/349 (77.08%), Postives = 294/349 (84.24%), Query Frame = 1
Query:  379 VVEGGGHPAAASMTKDWRDLSVEEETVLCEQIIENRRVQDLQLELERKQSRPVTVHEWAVAAGHPSAHQLMAALQEGRKAQRTMVLCHQGLVRSVAFRYKQITRSLSLEDLVQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIAGKDRLVRVPVHAQDTAMRILAASHALQLEDPEGSPPTDAQLALALSIPEASIALYRKSYLPQNVADLDDAGLAGGXXXXXXXXXXXXXXXX--VGGERWPWETARLAQAHVVRRDMMRAMAACLSPAEERALRLRFGLGAGEKEGAGGEAGGALTFKEIGRTMELSAEGIRKMVFRAIAKLQASDEANVLLLAYADLL 1419
            V  GG +P  +S T DWRDL+ EEET LCE IIENRR+QDLQ+ELERK+SRPVTV EWAVAAGHPSAHQLMAALQEGRKAQRT+ LCHQGLVRSVA+RYKQ++R+LSL+DL QEGNVGLL+AVEKFD TKGTRFSSYAVFRIKASVLRAIA KDRLVRVPVHAQD AMRILAASHALQLE   G  PTDAQLA+AL +PEAS+ALYRKS LPQN+ADLD+  L                     VGGE+WPWE ++LAQAHVVRRDMMRAM ACLSP EERALRLRFGLG  EKEGA  + GGALTFKEIGRTMELSAEGIRKMVFR+IAKLQASDEAN LLL+YADL+
Sbjct:   34 VRGGGANPVTSSSTTDWRDLTKEEETALCELIIENRRIQDLQVELERKESRPVTVQEWAVAAGHPSAHQLMAALQEGRKAQRTLALCHQGLVRSVAYRYKQVSRNLSLDDLTQEGNVGLLEAVEKFDSTKGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDAAMRILAASHALQLES-GGDVPTDAQLAVALGMPEASVALYRKSLLPQNIADLDNPALPSSPQGRGGSGAAGGGSLGGRVGGEQWPWEASQLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGAEKEGAVADGGGALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLSYADLI 381          
BLAST of mRNA_P-fluviatile_contig80.14751.1 vs. uniprot
Match: A0A835ZDU2_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDU2_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.820e-53
Identity = 135/332 (40.66%), Postives = 191/332 (57.53%), Query Frame = 1
Query:  433 DLSVEEETVLCEQIIENRRVQDLQLELERKQSRPVTVHEWAVAAGHPSAHQLMAALQEGRKAQRTMVLCHQGLVRSVAFRYKQITRSLSLEDLVQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIAGKDRLVRVPVHAQDTAMRILAASHALQLEDPEGSPPTDAQLALALSIPEASIALYR----KSYLPQN-VADLDDAGLAGGXXXXXXXXXXXXXXXXVGGERWPWETARLAQAHVVRRDMMRAMAACLSPAEERALRLRFGLGAGEKEGAGGEAGGALTFKEIGRTMELSAEGIRKMVFRAIAKLQASDEANVLLLAYAD 1413
            +L  + E  L   I E+ R+   Q +LE    R   V EWA AAG+  +  ++AAL+EG+KAQ  +V   + +VR++A +Y  IT+SL+L+DL+QEGN+GLL A +KFDP KG RF +YA FR+KASVLRAIA KDR +R+PVH QD A ++ +A+  LQ+    G PPTDA++A  L +  + +  +R    K  +  N V+D D    A                               A++ +V  D+ R +   L+P E  AL+LRFGL         G+A G LTFKE+G +M+ SAEGIR++V RA+ KL+   EA  LL  YA+
Sbjct:   46 ELDPDVENALYAAIREHSRIHAKQEQLECILGRSALVAEWASAAGYMDSMSMLAALREGQKAQTKLVKSQRAMVRAIAKKYAFITKSLTLDDLIQEGNLGLLSAADKFDPDKGARFGTYAAFRVKASVLRAIANKDRQIRIPVHIQDVAGKVRSATQRLQVT--LGRPPTDAEIAATLDMLPSEVTAHREMMDKEAVTVNAVSDRDVMAFAA-------------------------RATPQARSEMVE-DLKRVLELYLAPKEIEALQLRFGLD--------GQAAGPLTFKEVGGSMQTSAEGIRRIVSRALDKLR-EGEAWRLLSDYAE 340          
BLAST of mRNA_P-fluviatile_contig80.14751.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.140e-27
Identity = 103/325 (31.69%), Postives = 158/325 (48.62%), Query Frame = 1
Query:  436 LSVEEETVLCEQIIENRRVQDLQLELERKQSRPVTVHEWAVAAGHPSAHQLMAALQEGRKAQRTMVLCHQGLVRSVAFRYKQITRSLSLEDLVQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIAGKDRLVRVPVHAQDTAMRILAASHALQLEDPEGSPPTDAQLALALSIPEASIALYRKSYLPQNVADLDDAGLAGGXXXXXXXXXXXXXXXXVGGERWPWETARLAQAHVVRRDMMRAMAACLSPAEERALRLRFGLGAGEKEGAGGEAGGALTFKEIGRTMELSAEGIRKMVFRAIAKLQASDEANVLLLAYA 1410
            L  EEE  L  QI      +  + EL  +  R  ++ EWA   G       +  ++  R A+ TM+  +  L  S+A RY++  R L+L DL+QEG+ GL++A E+FDP KG +FS+YA + IK S++RAIA + R +R+PVH  D    +  A+  L LE   G  PTD +LA+ L +    I  YR +   Q+V  ++ +                         R P         H + ++ +  +   LSP E+  +RLRFGL          + G A T +EIG+   ++ E +R++  RA+ KL+     N  L AYA
Sbjct:   30 LKPEEEIALARQIKLGIEWEAAREELAMRLERTPSLGEWAAHMGVDEDTLKLIMIRSAR-AKSTMISANLRLAVSIAKRYRR--RGLALPDLIQEGSFGLMKAAERFDPEKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDFLNSVKRATRELSLE--LGRHPTDEELAMRLQVTAQKIVFYRDA--AQSVLSMEQSRNFASRKGSGASQGGKSDMTLEDSLRDPEPLPEDRTQHAMLKENLLQLLGTLSPREQEVVRLRFGL----------DDGRARTLEEIGQVFCVTRERVRQIESRALQKLR-QPYRNHKLRAYA 336          
BLAST of mRNA_P-fluviatile_contig80.14751.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.140e-27
Identity = 109/313 (34.82%), Postives = 155/313 (49.52%), Query Frame = 1
Query:  493 QDLQLELERKQSRPVTVHEWAVAAGHPSAHQLMAALQEGRKAQRTMVLCHQGLVRSVAFRYKQITRSLSLEDLVQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIAGKDRLVRVPVHAQDTAMRILAASHALQLEDPEGSPPTDAQLALALSIPEASIALYR---KSYLPQ----NVADLDDAGLAGGXXXXXXXXXXXXXXXXVGGERWPWETARLAQAHVVRRDMMRAMAACLSPAEERALRLRFGLGAGEKEGAGGEAGGALTFKEIGRTMELSAEGIRKMVFRAIAKLQASDEANVLLLAYA 1410
            ++L + LER+ SR     EWA   G       +  ++  R A+ TM+  +  L  S+A RYK   R L+L DLVQEG+ GL++A E+FDP KG +FS+YA + IK S++RAIA + R +R+PVH  D    I  A+  L LE   G  PTD +L+L L +P   I  YR   +S L      N A    A   GG                      P    R  Q+ +  ++ M  +   LSP E+  +RLRFGL          + G A T +EIG+   ++ E +R++  RA+ KL+     N  L AYA
Sbjct:   94 EELAVRLERQPSRA----EWAAHMGVDEDTLKLIMIRSSR-AKTTMISANLRLAVSIAKRYKH--RGLALSDLVQEGSFGLMKAAERFDPDKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDLLNSIKRATRELSLE--LGRTPTDEELSLRLQVPTQKIEFYREAARSVLSMEQSLNNARKGSAASLGGKSDMTLEDSLRDPE--------PLPEDRTQQSML--KENMSQLLGTLSPREQEVVRLRFGL----------DDGRARTLEEIGQVFCVTRERVRQIESRALQKLR-QPYRNHKLRAYA 376          
BLAST of mRNA_P-fluviatile_contig80.14751.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 125 bits (315), Expect = 6.340e-27
Identity = 108/313 (34.50%), Postives = 167/313 (53.35%), Query Frame = 1
Query:  436 LSVEEETVLCEQIIENRRVQDLQLELERKQSRPVTVHEWAVAAGHPSAHQLMAALQEGRKAQRTMVLCHQGLVRSVAFRYKQITRSLSLEDLVQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIAGKDRLVRVPVHAQDTAMRILAASHALQLEDPEGSPPTDAQLALALSIPEASIA-LYRKSYLPQNVADLDDAGLAGGXXXXXXXXXXXXXXXXVGGERWPWETARLAQAHVVRRDMMRAMAACLSPAEERALRLRFGLGAGEKEGAGGEAGGALTFKEIGRTMELSAEGIRKMVFRAIAKLQ 1371
            L+ +EE +L   +    + ++++  LE + +RP T  EWA A G     +L   ++  ++A+  M+  +  LV S+A RY   T +LS++DL QEG++GL++AVEKFDP +G RFS+YA + IK SV+RAIA + R +R+PVH  D    +    H  +L    G  PT  ++A A  I    +  L++ S    +       G AG XXXXXXXX           E  P E A L+    + +D +  +   LS  E+  +R+RFGL          + G A T +EIG+   ++ E IR++  RA+ KL+
Sbjct:  187 LTAQEEVLLARHVQLLLKWEEVRERLEIELARPPTYAEWAAAVG-VDTKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYTSRTNTLSVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTV--RKHKRELTGKLGRQPTTEEIAEAAGITVDKLQFLWKSSRETMSFEQEIRVGGAGXXXXXXXXXTVILSDSITDKEHMPEEKAALS----LMKDDIDRLLGTLSVREQDVIRMRFGL----------DDGKAKTLEEIGKRFRVTRERIRQIEARALHKLR 482          
BLAST of mRNA_P-fluviatile_contig80.14751.1 vs. uniprot
Match: UPI0008F9CA57 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Geitlerinema sp. PCC 9228 TaxID=111611 RepID=UPI0008F9CA57)

HSP 1 Score: 119 bits (299), Expect = 4.870e-26
Identity = 106/317 (33.44%), Postives = 155/317 (48.90%), Query Frame = 1
Query:  436 LSVEEETVLCEQIIENRRVQDLQLELERKQSRPVTVHEWAVAAGHPSAHQLMAALQEGRKAQRTMVLCHQGLVRSVAFRYKQITRSLSLEDLVQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIAGKDRLVRVPVHAQDTAMRILAASHALQLEDPEGSPPTDAQLALALSIPEASIALYRKSY-----LPQNVADLDDAGLAGGXXXXXXXXXXXXXXXXVGGERWPWETARLAQAHVVRRDMMRAMAACLSPAEERALRLRFGLGAGEKEGAGGEAGGALTFKEIGRTMELSAEGIRKMVFRAIAKLQ 1371
            L+ EEE    +Q+ +  ++Q+++ EL   Q R  T+ EWA AA   S  QL   L  G  A+R MV  +  LV SVA +Y  I R++ L DL+QEG +G+ + VEKFDPTKG RFS+YA + I+ ++ RAIA K R +R+P+H  +   +I  A     L    G   T A+LA  L +    I  Y +       L Q V D  D  L                    G     + T    +A +   ++M+     L+P ++  L LRFGL          E G ALT  +IG  + +S E +R++   A+ KL+
Sbjct:   24 LTHEEEIYYGKQVQKFNQLQEVKKELTESQGREPTMSEWAAAADL-SVEQLQKQLARGEHAKRKMVEANLRLVVSVAKKY--IKRNVDLMDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQR--NLSQNLGRAATVAELAEELDLSPKQIREYLERARQPLSLEQRVGDNQDTELG-------------DLLEDTGPSPEDFATQSSLKADLT--ELMQD----LTPQQKEVLALRFGL----------EDGKALTLSKIGDRLNISRERVRQIEREALTKLR 306          
BLAST of mRNA_P-fluviatile_contig80.14751.1 vs. uniprot
Match: UPI0019DF3EF8 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019DF3EF8)

HSP 1 Score: 119 bits (298), Expect = 6.480e-26
Identity = 108/317 (34.07%), Postives = 159/317 (50.16%), Query Frame = 1
Query:  436 LSVEEETVLCEQIIENRRVQDLQLELERKQSRPVTVHEWAVAAGHPSAHQLMAALQEGRKAQRTMVLCHQGLVRSVAFRYKQITRSLSLEDLVQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIAGKDRLVRVPVHAQDTAMRILAASHALQLEDPEGSPPTDAQLALALSIPEASIALY-RKSYLPQN----VADLDDAGLAGGXXXXXXXXXXXXXXXXVGGERWPWETARLAQAHVVRRDMMRAMAACLSPAEERALRLRFGLGAGEKEGAGGEAGGALTFKEIGRTMELSAEGIRKMVFRAIAKLQ 1371
            L+ EEE VL + +     ++  +  LE K  R  T  EWA A+G  S   L AA++EG +A+R MV  +  LV SVA +Y  I R++ L DL+QEG +G+ + VEKFDPTKG RFS+YA + I+ ++ RAIA K R +R+P+H  +   +I  A    QL    G   T ++LA  L +    +  Y  KS  P +    V D  D  L+                        P E A  A    +RRD+ + M   L+P + + L LRFGL  G+           +T  +IG  + +S E +R++   A+ KL+
Sbjct:   23 LTHEEEIVLGKCVQRLTELERHREALEEKLGRSPTQAEWAEASGL-STQALAAAIREGEQAKRKMVEANLRLVVSVAKKY--IKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKRAQR--QLSQKHGRTATVSELAAELELSPKLVREYLEKSRQPLSLDLRVGDNQDTELSDLLEDDGPS---------------PEEFATQA---ALRRDLDKLMVD-LTPQQRQVLNLRFGLDDGQ----------TMTLAKIGEMLSISRERVRQIEREALTKLR 305          
BLAST of mRNA_P-fluviatile_contig80.14751.1 vs. uniprot
Match: A0A5J4Z7E3_PORPP (RNA polymerase sigma factor SigA n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7E3_PORPP)

HSP 1 Score: 122 bits (307), Expect = 8.070e-26
Identity = 109/358 (30.45%), Postives = 170/358 (47.49%), Query Frame = 1
Query:  355 TGRRRSAFVVEGGG-------HPAAASMTKDWRDLSVEE------ETVLCEQIIENRRVQDLQLELERKQSRPVTVHEWAVAAGHPSAHQLMAALQEGRKAQRTMVLCHQGLVRSVAFRYKQITRSLSLEDLVQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIAGKDRLVRVPVHAQDTAMRILAASHALQLEDPEGSPPTDAQLALALSIPEASI------ALYRKSYLPQNVADLDDAGLAGGXXXXXXXXXXXXXXXXVGGERWPWETARLAQAHVVRRDMMRAMAACLSPAEERALRLRFGLGAGEKEGAGGEAGGALTFKEIGRTMELSAEGIRKMVFRAIAKLQ 1371
            T RRRS     GG         PAA +M +    +S ++      E  L  Q+     +Q ++ +  RK  RPV ++EWA   G  +A  L  A+Q G +A+  +V  + GLV +VA +Y     +L+ +DLVQEG +GL++A EKFD  KG RFS+YA + I+AS++R +  ++R +RVP    D    +      + L   +G  PT+ +LA  L +    +       + + S + QNVA       A                  VG               +++ D+ R +   L+P E   +RLRFGL          E G   T +E+G+ ++LS E IR++VF A+ KL+
Sbjct:  176 TDRRRSGGGASGGHLRRNSSVGPAATAMRQYLAGISQDDLLERAQEIALANQVRALVDLQKVRSDAARKLGRPVPLNEWAEMVGM-TAQDLTLAMQLGTRAKNQLVTSNMGLVHNVAGKYAGKVETLTFQDLVQEGAMGLMRAAEKFDAKKGWRFSTYATWWIRASMMRCMDHQERSIRVPGPVLDQFRLVKKTFTVMSLR--KGREPTNEELAKELKLSTDKLRFILQSGVRKPSSVDQNVARSGSNDDAHKTLLDILRSDENVEENIVG--------------EMLKGDLDRVLRRYLNPQERGVVRLRFGL----------EDGHTRTLEEVGKALKLSRERIRQVVFTAMRKLR 506          
BLAST of mRNA_P-fluviatile_contig80.14751.1 vs. uniprot
Match: Q39515_CYACA (Chloroplast RNA polymerase sigma subunit n=2 Tax=Cyanidiaceae TaxID=265316 RepID=Q39515_CYACA)

HSP 1 Score: 122 bits (307), Expect = 1.420e-25
Identity = 95/317 (29.97%), Postives = 153/317 (48.26%), Query Frame = 1
Query:  448 EETVLCEQIIENRRVQDLQLELERKQSRPVTVHEWAVAAGH-PSAHQLMAALQEGRKAQRTMVLCHQGLVRSVAFRYKQITRSLSLEDLVQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIAGKDRLVRVPVHAQDTAMRILAASHALQLEDPEGSPPTDAQLALALSIPEASIALYRKSYLPQNVADLDDAGLAGGXXXXXXXXXXXXXXXXVGGERWPWETARLAQAHVVRRDMMRAMAACLSPAEERALRLRFGLGAGEKEGAGGEAGGALTFKEIGRTMELSAEGIRKMVFRAIAKLQASDEANVL 1395
            EE  L +Q+     ++  Q     +  +  T  EWA   G+     +L   +++GRKA+  MV  +  LV S+A RY    R ++L+DL+QEG++GL++ VEKFD  +G RFS+YA + I+ S+ RAI+   R +R+PVH  DT   I   + ALQ+E   G PP++ ++  ++ I  A   L  +    +N+  L+    +G                       P E A    +    R+ +  +  CLS  E   +R+RFGL  G             T +E+G    ++ E IR++  +A+ KL+   E N L
Sbjct:  295 EEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCGYGDDVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSN--RGVALQDLIQEGSIGLIRGVEKFDAERGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVE--LGRPPSEEEICESVGIDRAKYRLVMEC--SRNIVSLETPLRSGDDVHFLGESLIA-----------PEERAEENCSRDTLRESIEKVLHCLSTREREVIRMRFGLTDGRPR----------TLEEVGSRFNVTRERIRQIESKALKKLRTPAENNFL 584          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig80.14751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMH8_9PHAE3.000e-18573.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPW8_ECTSI3.990e-17077.08RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
A0A835ZDU2_9STRA1.820e-5340.66RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A835ZBY3_9STRA1.140e-2731.69RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A835ZES3_9STRA1.140e-2734.82RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7S1B782_9STRA6.340e-2734.50Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
UPI0008F9CA574.870e-2633.44RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
UPI0019DF3EF86.480e-2634.07RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
A0A5J4Z7E3_PORPP8.070e-2630.45RNA polymerase sigma factor SigA n=1 Tax=Porphyrid... [more]
Q39515_CYACA1.420e-2529.97Chloroplast RNA polymerase sigma subunit n=2 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig80contigP-fluviatile_contig80:393413..396198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score504.6
Seed ortholog evalue4.8e-140
Seed eggNOG ortholog2880.D7FPW8
KEGG koko:K03086
EggNOG free text desc.sigma factor activity
EggNOG OGs2QVXR@2759,COG0568@1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase sigma-70 region 2
Ec32 orthologEc-01_008400.1
Exons3
Model size2078
Cds size1359
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig80.14751.1prot_P-fluviatile_contig80.14751.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig80 393476..395542 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817273.172899-UTR-P-fluviatile_contig80:393412..3934751622817273.172899-UTR-P-fluviatile_contig80:393412..393475Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 393413..393475 +
1693571871.9239342-UTR-P-fluviatile_contig80:393412..3934751693571871.9239342-UTR-P-fluviatile_contig80:393412..393475Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 393413..393475 +
1622817273.2159781-UTR-P-fluviatile_contig80:395542..3961981622817273.2159781-UTR-P-fluviatile_contig80:395542..396198Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 395543..396198 +
1693571871.975127-UTR-P-fluviatile_contig80:395542..3961981693571871.975127-UTR-P-fluviatile_contig80:395542..396198Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 395543..396198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817273.1848483-CDS-P-fluviatile_contig80:393475..3938591622817273.1848483-CDS-P-fluviatile_contig80:393475..393859Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 393476..393859 +
1693571871.9420094-CDS-P-fluviatile_contig80:393475..3938591693571871.9420094-CDS-P-fluviatile_contig80:393475..393859Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 393476..393859 +
1622817273.1951637-CDS-P-fluviatile_contig80:394167..3943911622817273.1951637-CDS-P-fluviatile_contig80:394167..394391Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 394168..394391 +
1693571871.9532752-CDS-P-fluviatile_contig80:394167..3943911693571871.9532752-CDS-P-fluviatile_contig80:394167..394391Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 394168..394391 +
1622817273.205559-CDS-P-fluviatile_contig80:394791..3955421622817273.205559-CDS-P-fluviatile_contig80:394791..395542Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 394792..395542 +
1693571871.964742-CDS-P-fluviatile_contig80:394791..3955421693571871.964742-CDS-P-fluviatile_contig80:394791..395542Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 394792..395542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig80.14751.1

>prot_P-fluviatile_contig80.14751.1 ID=prot_P-fluviatile_contig80.14751.1|Name=mRNA_P-fluviatile_contig80.14751.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=453bp
MEQRYSGGMRMAAARRRRRQYCVVGAAALFSACSGGVGSAVSAFGFGGGL
PQQSLSRSLRWVGVAGRGEGQALHLARDAKLRSRAPAPPKDAEALPATGR
RRSAFVVEGGGHPAAASMTKDWRDLSVEEETVLCEQIIENRRVQDLQLEL
ERKQSRPVTVHEWAVAAGHPSAHQLMAALQEGRKAQRTMVLCHQGLVRSV
AFRYKQITRSLSLEDLVQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKAS
VLRAIAGKDRLVRVPVHAQDTAMRILAASHALQLEDPEGSPPTDAQLALA
LSIPEASIALYRKSYLPQNVADLDDAGLAGGPGSTGSSGAAAGRGGRVGG
ERWPWETARLAQAHVVRRDMMRAMAACLSPAEERALRLRFGLGAGEKEGA
GGEAGGALTFKEIGRTMELSAEGIRKMVFRAIAKLQASDEANVLLLAYAD
LL*
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mRNA from alignment at P-fluviatile_contig80:393413..396198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig80.14751.1 ID=mRNA_P-fluviatile_contig80.14751.1|Name=mRNA_P-fluviatile_contig80.14751.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2786bp|location=Sequence derived from alignment at P-fluviatile_contig80:393413..396198+ (Porterinema fluviatile SAG_2381)
CGTGCCTACTGTGTTATCACTACCTCTTTAACAGTCGAAGCAGCGTGTTT GCGACAGAGCGCGATGGAACAAAGATATAGCGGAGGAATGAGGATGGCTG CCGCGAGGAGACGAAGACGGCAGTACTGCGTGGTCGGAGCCGCAGCACTT TTTTCTGCCTGCAGCGGCGGCGTCGGCAGTGCTGTCTCCGCGTTTGGCTT CGGCGGTGGCCTACCACAGCAGTCCTTGAGCCGCTCGCTACGATGGGTCG GGGTCGCTGGCAGAGGCGAAGGACAAGCGTTGCATCTCGCGAGGGACGCG AAATTACGGTCGAGAGCGCCAGCCCCGCCGAAAGACGCTGAAGCTCTGCC GGCAACAGGCCGTCGAAGGAGTGCGTTCGTCGTCGAAGGCGGGGGCCACC CCGCCGCTGCGTCAATGACGAAGGACTGGCGAGATTTGAGTGTCGAGGTG CGTCGCCGTATCCTTGTCTGCTTGTTGAGAGTGAAGTGTTGCTTTGCCTT TATTGGTACCGAGCCCTGTCCTAAGATCGATGAGTGGGAAAGGAGATCGA TGAGAGGGAAAGGGGCGTTATGTAAGGCCGGTATGTCGAGTGCGTGGTGT AGTTGTCTGACAGGTTGTACCGCGTTTTTCTCTGTTCCCGCTCTTACCCC AACAGCCGTTTCTCTTAATGTTTCTTGAAGATGCCCCTGGGCGTGTGCCA GTGCCTCTCACACTCATGTGCCCTCGTTTGCCTCGCACGCCTAACGCGCT CGCAGGAGGAAACGGTGTTGTGCGAGCAAATAATAGAAAACCGACGAGTC CAAGACTTGCAGCTTGAGCTGGAGCGGAAACAGTCCAGGCCGGTCACCGT GCACGAGTGGGCGGTCGCCGCCGGGCACCCGAGCGCTCACCAGCTCATGG CGGCATTACAAGAGGGTAGAAAGGCTCAGCGAACAATGGTGCTCTGCCAC CAGGGGCTGGTGCGGAGCGTGGCGTTCAGGTGTGGGCTCGAACTCTGCTT TGCTCTGTCTTTTGTGGCACTGTCTCATGACATGTCGCACGATTGGACGG TCGTGGCGGGGATGCATGCTTGTCTTCGCGAGCCAGCAAGATTGTGGTGT TTTGCTCTGTATTGTGTGATTGCTGTGCTCTGCGTCGTTGTATCGGCCTA TGCCTTTGTGATTGTTGTGCTTCATGGTGTGCGCCAATGGCCCCTCTCCT TTCCATTCTGCGACTATTGGGCACACATGTGTATCTCTTCATTATGTGCT ATTATTGGACGATGCGTGAAAATCTGACCGCGCTTCCTCGTCGCCCTTCC CGTTTGCACACTATCACCCCGCAAATCCATTTTTCCGGGCCACCGGCGCG ACCAATCTGGTCTCTCGTGATCGAACCAGGTACAAACAGATCACCCGAAG TCTCTCCCTGGAGGACCTCGTGCAGGAGGGCAACGTTGGCCTCCTCCAGG CCGTGGAGAAGTTCGACCCTACCAAGGGGACCCGCTTCAGCTCCTACGCC GTCTTCCGCATCAAAGCCTCCGTCCTACGCGCCATCGCGGGGAAGGACCG CCTCGTGCGAGTCCCCGTGCACGCCCAGGACACCGCCATGCGGATCCTGG CGGCCTCTCACGCTCTGCAGCTTGAAGACCCGGAGGGCTCGCCGCCCACC GACGCCCAGCTGGCTCTTGCCCTCAGCATTCCGGAGGCTAGCATCGCCCT CTACAGGAAATCGTACCTCCCGCAGAACGTGGCGGACTTGGACGACGCTG GCCTGGCCGGCGGGCCGGGGAGTACTGGTAGCAGTGGGGCGGCGGCCGGC CGAGGCGGGAGGGTCGGCGGGGAGCGTTGGCCGTGGGAAACGGCGCGGCT CGCCCAGGCGCACGTGGTCCGGCGGGACATGATGAGGGCTATGGCGGCTT GCCTGTCGCCCGCGGAGGAAAGAGCGCTGAGGCTGAGGTTTGGGCTGGGG GCGGGCGAGAAAGAGGGCGCGGGCGGAGAGGCAGGGGGGGCGCTCACCTT CAAGGAGATCGGGAGGACGATGGAGCTGAGCGCCGAGGGCATACGGAAGA TGGTGTTCCGCGCCATCGCCAAGCTGCAGGCGTCGGACGAGGCTAACGTC CTGCTCCTCGCCTACGCTGACTTGTTATGATAGTAGAGGATTTCGATGCG TTTGAAGGTGTACGATATGAGGCTTTTGCCAAAGTCACGTATTGGTTTCC CGTCGAACATCCTTTCGTTGTGGAAGTGCTTTCCTCACGTGATGTCTGAA CCGGTCGCTAAGTACCTTAAATCGCCTCTACGTCCTTCACGCGTTTCACG TGAAAGCTTGGTGATGTCTCCATGCGGAGGCGATTTCGTCGGCGAAGATT TTGTCCGCACACAAATTGTCTTTCCAGTGTGTGCGTCGACGGCCTTTCTG TTCTGCTTTTAGGTCATCATGACTTCGGATGGGGTGTGTGATATACTCCG GAGTACTCAATGTTTTTGAAATGCGCCGTGGTGGCCGTCACGCTGCCGCC TGAACGGTTTGTTCGCCCCGTGTATGTGTATGTTTTTTTTGTTTGTTTTA TCCTGCCGCTCCTCGGCGGGCGAGTGGAAATCCAGGACGCGGAAAGAAGG AAGATAGATGAGTCCTTGTTGTTCAAAACTTTGTTGCGTTTATTTCGGTT CCCTTTTCCCATGTGTAGGTGCGCTGTGAAGGATTGTGCAGCTTTGCAGA CGTTGGTCGCGAGTCTGCAGGGAACTCTGCGTCTATGGAGGTTGATGTCT CTATTCAATAAGCAAAAGCAACGTCCTATGTTCGTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig80:393413..396198+

>mRNA_P-fluviatile_contig80.14751.1 ID=mRNA_P-fluviatile_contig80.14751.1|Name=mRNA_P-fluviatile_contig80.14751.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2718bp|location=Sequence derived from alignment at P-fluviatile_contig80:393413..396198+ (Porterinema fluviatile SAG_2381)
ATGGAACAAAGATATAGCGGAGGAATGAGGATGGCTGCCGCGAGGAGACG
AAGACGGCAGTACTGCGTGGTCGGAGCCGCAGCACTTTTTTCTGCCTGCA
GCGGCGGCGTCGGCAGTGCTGTCTCCGCGTTTGGCTTCGGCGGTGGCCTA
CCACAGCAGTCCTTGAGCCGCTCGCTACGATGGGTCGGGGTCGCTGGCAG
AGGCGAAGGACAAGCGTTGCATCTCGCGAGGGACGCGAAATTACGGTCGA
GAGCGCCAGCCCCGCCGAAAGACGCTGAAGCTCTGCCGGCAACAGGCCGT
CGAAGGAGTGCGTTCGTCGTCGAAGGCGGGGGCCACCCCGCCGCTGCGTC
AATGACGAAGGACTGGCGAGATTTGAGTGTCGAGATGGAACAAAGATATA
GCGGAGGAATGAGGATGGCTGCCGCGAGGAGACGAAGACGGCAGTACTGC
GTGGTCGGAGCCGCAGCACTTTTTTCTGCCTGCAGCGGCGGCGTCGGCAG
TGCTGTCTCCGCGTTTGGCTTCGGCGGTGGCCTACCACAGCAGTCCTTGA
GCCGCTCGCTACGATGGGTCGGGGTCGCTGGCAGAGGCGAAGGACAAGCG
TTGCATCTCGCGAGGGACGCGAAATTACGGTCGAGAGCGCCAGCCCCGCC
GAAAGACGCTGAAGCTCTGCCGGCAACAGGCCGTCGAAGGAGTGCGTTCG
TCGTCGAAGGCGGGGGCCACCCCGCCGCTGCGTCAATGACGAAGGACTGG
CGAGATTTGAGTGTCGAGGAGGAAACGGTGTTGTGCGAGCAAATAATAGA
AAACCGACGAGTCCAAGACTTGCAGCTTGAGCTGGAGCGGAAACAGTCCA
GGCCGGTCACCGTGCACGAGTGGGCGGTCGCCGCCGGGCACCCGAGCGCT
CACCAGCTCATGGCGGCATTACAAGAGGGTAGAAAGGCTCAGCGAACAAT
GGTGCTCTGCCACCAGGGGCTGGTGCGGAGCGTGGCGTTCAGGAGGAAAC
GGTGTTGTGCGAGCAAATAATAGAAAACCGACGAGTCCAAGACTTGCAGC
TTGAGCTGGAGCGGAAACAGTCCAGGCCGGTCACCGTGCACGAGTGGGCG
GTCGCCGCCGGGCACCCGAGCGCTCACCAGCTCATGGCGGCATTACAAGA
GGGTAGAAAGGCTCAGCGAACAATGGTGCTCTGCCACCAGGGGCTGGTGC
GGAGCGTGGCGTTCAGGTACAAACAGATCACCCGAAGTCTCTCCCTGGAG
GACCTCGTGCAGGAGGGCAACGTTGGCCTCCTCCAGGCCGTGGAGAAGTT
CGACCCTACCAAGGGGACCCGCTTCAGCTCCTACGCCGTCTTCCGCATCA
AAGCCTCCGTCCTACGCGCCATCGCGGGGAAGGACCGCCTCGTGCGAGTC
CCCGTGCACGCCCAGGACACCGCCATGCGGATCCTGGCGGCCTCTCACGC
TCTGCAGCTTGAAGACCCGGAGGGCTCGCCGCCCACCGACGCCCAGCTGG
CTCTTGCCCTCAGCATTCCGGAGGCTAGCATCGCCCTCTACAGGAAATCG
TACCTCCCGCAGAACGTGGCGGACTTGGACGACGCTGGCCTGGCCGGCGG
GCCGGGGAGTACTGGTAGCAGTGGGGCGGCGGCCGGCCGAGGCGGGAGGG
TCGGCGGGGAGCGTTGGCCGTGGGAAACGGCGCGGCTCGCCCAGGCGCAC
GTGGTCCGGCGGGACATGATGAGGGCTATGGCGGCTTGCCTGTCGCCCGC
GGAGGAAAGAGCGCTGAGGCTGAGGTTTGGGCTGGGGGCGGGCGAGAAAG
AGGGCGCGGGCGGAGAGGCAGGGGGGGCGCTCACCTTCAAGGAGATCGGG
AGGACGATGGAGCTGAGCGCCGAGGGCATACGGAAGATGGTGTTCCGCGC
CATCGCCAAGCTGCAGGCGTCGGACGAGGCTAACGTCCTGCTCCTCGCCT
ACGCTGACTTGTTATGAGTACAAACAGATCACCCGAAGTCTCTCCCTGGA
GGACCTCGTGCAGGAGGGCAACGTTGGCCTCCTCCAGGCCGTGGAGAAGT
TCGACCCTACCAAGGGGACCCGCTTCAGCTCCTACGCCGTCTTCCGCATC
AAAGCCTCCGTCCTACGCGCCATCGCGGGGAAGGACCGCCTCGTGCGAGT
CCCCGTGCACGCCCAGGACACCGCCATGCGGATCCTGGCGGCCTCTCACG
CTCTGCAGCTTGAAGACCCGGAGGGCTCGCCGCCCACCGACGCCCAGCTG
GCTCTTGCCCTCAGCATTCCGGAGGCTAGCATCGCCCTCTACAGGAAATC
GTACCTCCCGCAGAACGTGGCGGACTTGGACGACGCTGGCCTGGCCGGCG
GGCCGGGGAGTACTGGTAGCAGTGGGGCGGCGGCCGGCCGAGGCGGGAGG
GTCGGCGGGGAGCGTTGGCCGTGGGAAACGGCGCGGCTCGCCCAGGCGCA
CGTGGTCCGGCGGGACATGATGAGGGCTATGGCGGCTTGCCTGTCGCCCG
CGGAGGAAAGAGCGCTGAGGCTGAGGTTTGGGCTGGGGGCGGGCGAGAAA
GAGGGCGCGGGCGGAGAGGCAGGGGGGGCGCTCACCTTCAAGGAGATCGG
GAGGACGATGGAGCTGAGCGCCGAGGGCATACGGAAGATGGTGTTCCGCG
CCATCGCCAAGCTGCAGGCGTCGGACGAGGCTAACGTCCTGCTCCTCGCC
TACGCTGACTTGTTATGA
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