mRNA_P-fluviatile_contig80.14711.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig80.14711.1
Unique NamemRNA_P-fluviatile_contig80.14711.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig80.14711.1 vs. uniprot
Match: A0A6H5L1G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G3_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.380e-49
Identity = 101/159 (63.52%), Postives = 117/159 (73.58%), Query Frame = 1 
Query:    1 MNAMWRSVVIVLALIISICTAFHVSPATSLART----AAERQFHSTQPDHVSSATWRAYPAAGARQTTSCRASMTAQGPGSSKSAQRVATVAGLTSVAILTGSAVPAHAENFAQYFAQGVVGAINGPGILAIPIILGFGLASAVAFFIYFFSQPREYDD 465
            M A WR V++ LA ++S CTAFHVSP TS  R     AA  +  +TQ  HV+  T RAY   GA +T++   SM A  P SSKSAQRVA VA + S A LTGSAVPAHA+NFA+YFA G+VG INGPGILAIPI+LG GLASA+AFFIYFFSQPREYDD
Sbjct:    2 MGATWRLVLLALAFVLSACTAFHVSP-TSFGRQPVGRAASLRPSATQSQHVAPFT-RAYRHTGASRTSTRGPSMAAGEPLSSKSAQRVAAVAAVASAATLTGSAVPAHADNFAEYFANGIVGTINGPGILAIPIVLGIGLASAIAFFIYFFSQPREYDD 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig80.14711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1G3_9PHAE1.380e-4963.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig80contigP-fluviatile_contig80:44096..45182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_008920.1
Exons2
Model size522
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig80.14711.1prot_P-fluviatile_contig80.14711.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig80 44150..45182 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.5179317-UTR-P-fluviatile_contig80:44095..441491622817268.5179317-UTR-P-fluviatile_contig80:44095..44149Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 44096..44149 -
1693571849.6597269-UTR-P-fluviatile_contig80:44095..441491693571849.6597269-UTR-P-fluviatile_contig80:44095..44149Porterinema fluviatile SAG_2381UTRP-fluviatile_contig80 44096..44149 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.5282683-CDS-P-fluviatile_contig80:44149..444421622817268.5282683-CDS-P-fluviatile_contig80:44149..44442Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 44150..44442 -
1693571849.6716206-CDS-P-fluviatile_contig80:44149..444421693571849.6716206-CDS-P-fluviatile_contig80:44149..44442Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 44150..44442 -
1622817268.538347-CDS-P-fluviatile_contig80:45007..451821622817268.538347-CDS-P-fluviatile_contig80:45007..45182Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 45008..45182 -
1693571849.6816733-CDS-P-fluviatile_contig80:45007..451821693571849.6816733-CDS-P-fluviatile_contig80:45007..45182Porterinema fluviatile SAG_2381CDSP-fluviatile_contig80 45008..45182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig80.14711.1

>prot_P-fluviatile_contig80.14711.1 ID=prot_P-fluviatile_contig80.14711.1|Name=mRNA_P-fluviatile_contig80.14711.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=156bp
MNAMWRSVVIVLALIISICTAFHVSPATSLARTAAERQFHSTQPDHVSSA
TWRAYPAAGARQTTSCRASMTAQGPGSSKSAQRVATVAGLTSVAILTGSA
VPAHAENFAQYFAQGVVGAINGPGILAIPIILGFGLASAVAFFIYFFSQP
REYDD*
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mRNA from alignment at P-fluviatile_contig80:44096..45182-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig80.14711.1 ID=mRNA_P-fluviatile_contig80.14711.1|Name=mRNA_P-fluviatile_contig80.14711.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1087bp|location=Sequence derived from alignment at P-fluviatile_contig80:44096..45182- (Porterinema fluviatile SAG_2381)
ATGAACGCCATGTGGAGATCGGTCGTCATTGTCCTGGCTCTTATCATCTC
TATCTGTACCGCGTTTCATGTCTCACCCGCCACCAGCCTCGCCCGAACAG
CAGCAGAGAGGCAATTTCACTCGACACAGCCTGATCATGTATCCTCTGCC
ACCTGGAGGGCATACCCCGCTGCAGGTAAGTACGTACAGAACCTGCTGTC
AGTACCATATTGCTTGTGTTTGTCATGCTGAGCTGAGCACACGTTCGCGG
AGACACGTGGTGTGATACGACATTGTGGACCAAACATTGAGCTAGCGAAC
ACTGCAAAACGTGCGGTGCGTCTTTGCTGCTCTCGTCACTCATGTTCTGG
GGTCGTGTTCACATGAAGCGCATCCCACATTTCACGGGTGTCTCACCCTC
GAATTCGCGCGCGCTGGATTCGCGCAGTTGACTTTGTCAACGCACAAAAC
ACTTTGCAGAGTGCTGGAGTCGATTATGTTGCTCCCCCCCCTGCTTCCAA
CGCCCCGGCGACTATTTATTCATATTCTAGTGGAGAGGACGGGGAGTGTT
GCCGTATTGCTATCTGCCTGACATTCGAGGAGCCCACCACGCCGGGATTT
GTCTTCGAGACAGAAAAATGGAGCAATCGGGCTTCAATTAATCAGCACAT
ATTCCTTGAAGGCGTCTGCATTGCATAAATTGGCCGTCCTGCCTCGTTTC
ACGCGTACACGCCCTGCCTCCCCTCGTTTTTTTATGGCAGGAGCGCGCCA
GACAACTTCTTGCCGAGCTTCCATGACCGCACAGGGACCTGGAAGCAGCA
AAAGCGCGCAGCGCGTTGCTACCGTTGCTGGATTGACCTCTGTGGCGATC
CTTACCGGATCCGCCGTGCCCGCGCACGCGGAGAACTTCGCCCAGTACTT
CGCGCAGGGAGTGGTGGGTGCCATCAACGGCCCGGGAATCCTGGCGATCC
CTATCATTCTCGGCTTTGGGCTCGCCTCGGCAGTCGCGTTTTTCATCTAC
TTCTTCTCCCAGCCGCGAGAATACGACGACTAGGACGAAGGAGGGGGATT
GTTTTCTTCCCGCCTGGCGGAGGGGTGAGAGAGCGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig80:44096..45182-

>mRNA_P-fluviatile_contig80.14711.1 ID=mRNA_P-fluviatile_contig80.14711.1|Name=mRNA_P-fluviatile_contig80.14711.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=936bp|location=Sequence derived from alignment at P-fluviatile_contig80:44096..45182- (Porterinema fluviatile SAG_2381)
ATGAACGCCATGTGGAGATCGGTCGTCATTGTCCTGGCTCTTATCATCTC
TATCTGTACCGCGTTTCATGTCTCACCCGCCACCAGCCTCGCCCGAACAG
CAGCAGAGAGGCAATTTCACTCGACACAGCCTGATCATGTATCCTCTGCC
ACCTGGAGGGCATACCCCGCTGCAGATGAACGCCATGTGGAGATCGGTCG
TCATTGTCCTGGCTCTTATCATCTCTATCTGTACCGCGTTTCATGTCTCA
CCCGCCACCAGCCTCGCCCGAACAGCAGCAGAGAGGCAATTTCACTCGAC
ACAGCCTGATCATGTATCCTCTGCCACCTGGAGGGCATACCCCGCTGCAG
GAGCGCGCCAGACAACTTCTTGCCGAGCTTCCATGACCGCACAGGGACCT
GGAAGCAGCAAAAGCGCGCAGCGCGTTGCTACCGTTGCTGGATTGACCTC
TGTGGCGATCCTTACCGGATCCGCCGTGCCCGCGCACGCGGAGAACTTCG
CCCAGTACTTCGCGCAGGGAGTGGTGGGTGCCATCAACGGCCCGGGAATC
CTGGCGATCCCTATCATTCTCGGCTTTGGGCTCGCCTCGGCAGTCGCGTT
TTTCATCTACTTCTTCTCCCAGCCGCGAGAATACGACGACTAGGAGCGCG
CCAGACAACTTCTTGCCGAGCTTCCATGACCGCACAGGGACCTGGAAGCA
GCAAAAGCGCGCAGCGCGTTGCTACCGTTGCTGGATTGACCTCTGTGGCG
ATCCTTACCGGATCCGCCGTGCCCGCGCACGCGGAGAACTTCGCCCAGTA
CTTCGCGCAGGGAGTGGTGGGTGCCATCAACGGCCCGGGAATCCTGGCGA
TCCCTATCATTCTCGGCTTTGGGCTCGCCTCGGCAGTCGCGTTTTTCATC
TACTTCTTCTCCCAGCCGCGAGAATACGACGACTAG
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