mRNA_P-fluviatile_contig8.14556.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14556.1
Unique NamemRNA_P-fluviatile_contig8.14556.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14556.1 vs. uniprot
Match: D8LIN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN3_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 5.740e-50
Identity = 165/357 (46.22%), Postives = 183/357 (51.26%), Query Frame = 2 
Query:  236 MTLALAGSPLVGRHFKRTGKSSGSSALPAGSPRPSGTASALTAGESEIVLDRLEKEIATLLHAGRGAKKDTVRRRLRMGINEVTKFLEATAAAVTSHKSTCPSTSSPSRA-----PXXXXXXXXXXXXXXXXXXXXXXLSSPSPQSRFALQPAIVLVCRDVRPARLVEHVHALVSLTGTPHLVLSESSTSLGRVFGCKTMAALAICPASSPPPSHPSP-SPAG----------------------GRGAKAVTPQEQVGSRNSSNNIDSSGKGSNCSSIGKIGGGGVKAHGDGGDGGGGWTELEDGESRAGEVVANEREEAAGSGDGSGSDWVASDDHAAVDEDVDSFVEFLRRKVR 1222
            MTLALAGSPLVGR+ KR GKS   ++ P GS    G A AL   ES+IVLDRL KEI TLL AG G+KKD  RRRLRMGINEVTKFLE+ AAA  +   T  S S  S                              L +P+P       PAIVL+CRDVRPARLVEHVHALV LT TP LVLSE S+SLG VFGCKTMAALAICPA +P P+  S  SP                         RGA A T + +   +      D  G+   CS      GGG                        G       E   G  DG G +   SDD  AVDEDVDSFVEFLRRKVR
Sbjct:    1 MTLALAGSPLVGRNVKRGGKSPKHASSP-GSSGTKGAALALETNESKIVLDRLGKEIVTLLQAG-GSKKDAARRRLRMGINEVTKFLESKAAAAAAPPKTPSSASRGSSINRQGISKASGKCDSAQAGAGAEVGARASLVAPAPPHT---PPAIVLICRDVRPARLVEHVHALVVLTATPFLVLSEPSSSLGGVFGCKTMAALAICPARTPRPAQTSSISPPXXXXXXXXXXXXXXXXXXXXXXRARGATAATGEGEGEEK------DVEGR-EGCS------GGGXXXX---------XXXXXXXXXXRGXXXXXXXE---GRRDGGG-EVTVSDDRVAVDEDVDSFVEFLRRKVR 326
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BLAST of mRNA_P-fluviatile_contig8.14556.1 vs. uniprot
Match: W7TQK6_9STRA (Ribosomal protein L7Ae/L8/Nhp2 family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQK6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.270e-5
Identity = 24/51 (47.06%), Postives = 38/51 (74.51%), Query Frame = 2 
Query:  677 AIVLVCRDVRPARLVEHVHALVSLTGTPHLVLSESSTSLGRVFGCKTMAAL 829
            +++L+CRDVRPARLVEHV  L ++   P  +L +++++LG+  G K +AAL
Sbjct:  198 SLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAAL 248
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIN3_ECTSI5.740e-5046.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TQK6_9STRA4.270e-547.06Ribosomal protein L7Ae/L8/Nhp2 family n=1 Tax=Nann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2629223..2632413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog description50S ribosomal protein L30e-like
Ec32 orthologEc-11_004520.1
Exons4
Model size1576
Cds size1068
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14556.1prot_P-fluviatile_contig8.14556.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2629529..2632211 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817249.1873107-UTR-P-fluviatile_contig8:2629222..26295281622817249.1873107-UTR-P-fluviatile_contig8:2629222..2629528Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2629223..2629528 -
1693571701.6782951-UTR-P-fluviatile_contig8:2629222..26295281693571701.6782951-UTR-P-fluviatile_contig8:2629222..2629528Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2629223..2629528 -
1622817249.2452183-UTR-P-fluviatile_contig8:2632211..26324131622817249.2452183-UTR-P-fluviatile_contig8:2632211..2632413Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2632212..2632413 -
1693571701.7415307-UTR-P-fluviatile_contig8:2632211..26324131693571701.7415307-UTR-P-fluviatile_contig8:2632211..2632413Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2632212..2632413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817249.1979551-CDS-P-fluviatile_contig8:2629528..26300461622817249.1979551-CDS-P-fluviatile_contig8:2629528..2630046Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2629529..2630046 -
1693571701.6913576-CDS-P-fluviatile_contig8:2629528..26300461693571701.6913576-CDS-P-fluviatile_contig8:2629528..2630046Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2629529..2630046 -
1622817249.2085238-CDS-P-fluviatile_contig8:2630591..26309151622817249.2085238-CDS-P-fluviatile_contig8:2630591..2630915Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2630592..2630915 -
1693571701.7091181-CDS-P-fluviatile_contig8:2630591..26309151693571701.7091181-CDS-P-fluviatile_contig8:2630591..2630915Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2630592..2630915 -
1622817249.2195532-CDS-P-fluviatile_contig8:2631605..26317491622817249.2195532-CDS-P-fluviatile_contig8:2631605..2631749Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2631606..2631749 -
1693571701.7215233-CDS-P-fluviatile_contig8:2631605..26317491693571701.7215233-CDS-P-fluviatile_contig8:2631605..2631749Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2631606..2631749 -
1622817249.233137-CDS-P-fluviatile_contig8:2632129..26322111622817249.233137-CDS-P-fluviatile_contig8:2632129..2632211Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2632130..2632211 -
1693571701.7313771-CDS-P-fluviatile_contig8:2632129..26322111693571701.7313771-CDS-P-fluviatile_contig8:2632129..2632211Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2632130..2632211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14556.1

>prot_P-fluviatile_contig8.14556.1 ID=prot_P-fluviatile_contig8.14556.1|Name=mRNA_P-fluviatile_contig8.14556.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=356bp
MSARAKKRVRPMTLALAGSPLVGRHFKRTGKSSGSSALPAGSPRPSGTAS
ALTAGESEIVLDRLEKEIATLLHAGRGAKKDTVRRRLRMGINEVTKFLEA
TAAAVTSHKSTCPSTSSPSRAPAEGEGSTTTCRRRNEKEGEGGGLSSPSP
QSRFALQPAIVLVCRDVRPARLVEHVHALVSLTGTPHLVLSESSTSLGRV
FGCKTMAALAICPASSPPPSHPSPSPAGGRGAKAVTPQEQVGSRNSSNNI
DSSGKGSNCSSIGKIGGGGVKAHGDGGDGGGGWTELEDGESRAGEVVANE
REEAAGSGDGSGSDWVASDDHAAVDEDVDSFVEFLRRKVRAAAPSAFAEQ
DPTGR*
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mRNA from alignment at P-fluviatile_contig8:2629223..2632413-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14556.1 ID=mRNA_P-fluviatile_contig8.14556.1|Name=mRNA_P-fluviatile_contig8.14556.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3191bp|location=Sequence derived from alignment at P-fluviatile_contig8:2629223..2632413- (Porterinema fluviatile SAG_2381)
GTCCCTGTCCCTCTATTCCCCCTTACTCTGTCCTTCTCTGGTCTCTGTAT
CTATTTCCCTCACCCTATTTCTCTCCCTTTTTAGTTGGAGAGGAGGTGTG
GAAATATATCACATCCTGCCCGTGGCCTCGGGCAGCGAAAATCAACGCGG
CACCAGCCAGCGGAGACGCAGAGACAGCGACCGAGAGAAGTCTGCGGGTA
CCATGTCCGCTCGAGCGAAGAAGAGAGTCCGTCCGATGACCTTAGCCCTA
GCAGGCAGCCCTCTCGTGGGCCGACACTTCAAGCGTGAGTAGATGTGTCT
TACTGCCGCAGCGCCCACACGTCTTGTCGGGACCTAACACCTTCAATGCG
CTGTTGACATGCCCTACAGAAGTACATCAGTAATTCGGTTGCCGTTTATG
TGCGCCTCGGTAGCATGACTTGGAGCTGCCGCGGACATTCGGGACTGGAA
AATTTAGGCGGACGCGGGCGCATCTCGCTGATTTCGCGTTCCTGTCCACG
GTGAACTTTTTGAAAGAAACTCAACGCGGCTCACGGAGCCACTTTTATCG
CCAGTCCCGCGGCAAACACACACCCACGAGAAATGCCTGGAACTTCCCAC
TCACATCCCCGATCCGAAGCCAATTTTGTTGTGCGCGTTGACGGGTTGTC
GGTGGACTTTGAAGGCACTGGAAAGTCATCCGGCTCGTCTGCCTTGCCAG
CAGGGTCCCCGAGACCGAGCGGTACCGCCTCAGCCTTGACGGCAGGCGAG
AGTGAGATCGTCCTGGATAGGCTCGAGAAAGAGATCGCCACCCTGCTCCA
TGCAGGTAGTGAATAAGCCCAATGTTGTGAATATTCACGTGTGTGTGTTT
GTCGCTCGCGGTGGATGATATTACACGGTCAGAGGCCGACAGAGGGGCCG
GCTGTTCCCCGTTGTTGTTGTTTTTTTTGACAGGTAACACAGCGGCTACC
TCTGTTGGTGGTTGTCCTGCTCAATTGATTTGGAGCGATCTCGTCGTTGT
GCGTTGTGCAGCACGGGGCTTTTGTCGCCACGAATGTCGTCAAGAGGAAT
GGACGGGTTTGGCAGATACTTGCACAGCACTTTTCGAGCGTTTGTTCTGT
GGCAAGTGCATCTAGGTCACGTTCCTCTCGCTTGGCCCTTGGCCGTGGAA
ACAATAACATGCGTACAAAAGAGTGTTCGCAGCAGCAGCACGAGGTATCA
CATCGACTCACAACAGGTACCGAATTCTGCGGAGTTTGATAGATCCCCTT
GGGGCGATTTTCAAACGTCGACGGTTGCACTGTCGAGCGGGCTTCGATGC
CTGACGAGAGGCTTTCGGAAAGCTCTTAGTTTTGAAGCCGGCCGTTTCGG
TCTATACTTTCATCCTTATGTGGAACTTCCAAGCTTTGGAAAACTGGCTC
AGAGGGTCTTCTTTCGACTCCGCAGAATACGGAAGGCGCCGATGCTTACT
CCGATTCTCTAGAATTTAACACTATTCAATCGCCACCAAACCCATCAGGA
GGCGCTAAGAAAGACACCGTCAGGCGACGCCTTCGGATGGGAATCAACGA
GGTCACCAAGTTCCTCGAAGCCACTGCCGCCGCGGTCACTTCCCACAAGA
GTACGTGCCCATCCACATCGTCACCGAGCAGAGCCCCCGCAGAGGGCGAG
GGCTCGACGACGACTTGCCGGAGGCGAAACGAAAAAGAGGGCGAAGGCGG
GGGCCTGTCTTCCCCGAGCCCCCAGTCCCGTTTCGCCCTGCAACCTGCAA
TTGTCCTAGTCTGCAGGGATGTGCGGCCCGCGAGGCTGGTGGAACACGTC
CACGCCTTGGTGTCCCTCACCGGTGAGCTCAGAAAATTGGGGAACCGAAT
ATTCGGAACCGAACTGTTTTCACTTTTTGGCATGAACATTTCTTTTTTTC
TGCCCTTCTGCGCCGTCAGTACGTGGAGTTGTTTTTTGCCTTCTTCGTAT
GCGGCTTTAAGGAAAGCGCAAACCCGACCCATCCCTCTTATGACATCAGC
ACGTTCGTTCATGTTTCCTATCGTTCCTCGATGTCTATCTAGCTTTCTTC
ACATCTAGTCTTCTTGCGACCTTGGCCGCGCCCGCAGCCTGGCGTGTTCG
TTGCCCTCTTGCGCCCGGTGTGTATTTTTGACCAACCTAGGGAACGTGGT
CGCTCCCTATCTGTCCATGCCTGGATCTCTCGGTATCCGGCGGTACAGTA
GCATCCTCGCCTCTTGCTGCGTAACGTGTTCCCTGCGGACGCAGCCCTCC
CGATGATGCTCCTCCATCCCACTCCACTTCACCTTTTGGTTCCGTTGCAA
CCCATGGCCGTGTGCACGTGCGTGCTCCCCCCGTGTTGCCTCGTCTTGAC
CTACCCAAACCGTCCAGGGACTCCCCACCTTGTGCTGTCCGAGTCCAGCA
CCAGCCTTGGGAGAGTTTTCGGCTGCAAAACGATGGCGGCTTTGGCCATA
TGCCCTGCCAGTTCGCCGCCGCCGTCCCATCCCTCCCCGTCGCCGGCCGG
GGGAAGGGGTGCTAAGGCCGTCACCCCACAGGAACAGGTTGGTAGTCGCA
ACAGCAGCAATAACATCGACAGCAGCGGCAAAGGAAGCAATTGCAGTAGC
ATTGGCAAGATCGGCGGCGGTGGAGTCAAGGCGCACGGCGACGGCGGCGA
TGGCGGCGGTGGCTGGACGGAGTTGGAGGACGGGGAGTCAAGGGCAGGAG
AGGTTGTGGCCAATGAAAGGGAGGAGGCAGCGGGCAGCGGGGATGGGAGC
GGGAGTGATTGGGTAGCTTCTGACGATCACGCCGCTGTCGACGAGGACGT
AGATTCGTTCGTTGAGTTCCTGAGACGGAAAGTCCGGGCGGCGGCGCCTT
CAGCTTTCGCGGAACAAGACCCGACCGGTCGATGAGAGAGTTTCGTTTTG
GTCGCTCGTTCACCTCGCAATATTCTTCCGGGGTTCTTGCTGGCTTCGTT
CGGCATCCGGCACCCCCTTCGATCGTGGTCTGATTAATGTTTCCTCGAGC
TGTGCTATCGTAGTACTAGACTTGTTGGATTCGGTGGAAGCCTCGAGATC
GTCAACCCTGTCCGATTTCTTTGACCCCTGTCGTGTTTGGAGGTGTCTAA
GTATTCCTCGCTGTGGCTGTCGCGGCGGTGGAAGGTGCGCGTCGTGCGAC
GTCATCATCCCACTGTTCAAAGCAGCGTTCTTCAACCCGAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:2629223..2632413-

>mRNA_P-fluviatile_contig8.14556.1 ID=mRNA_P-fluviatile_contig8.14556.1|Name=mRNA_P-fluviatile_contig8.14556.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2136bp|location=Sequence derived from alignment at P-fluviatile_contig8:2629223..2632413- (Porterinema fluviatile SAG_2381)
ATGTCCGCTCGAGCGAAGAAGAGAGTCCGTCCGATGACCTTAGCCCTAGC
AGGCAGCCCTCTCGTGGGCCGACACTTCAAGCATGTCCGCTCGAGCGAAG
AAGAGAGTCCGTCCGATGACCTTAGCCCTAGCAGGCAGCCCTCTCGTGGG
CCGACACTTCAAGCGCACTGGAAAGTCATCCGGCTCGTCTGCCTTGCCAG
CAGGGTCCCCGAGACCGAGCGGTACCGCCTCAGCCTTGACGGCAGGCGAG
AGTGAGATCGTCCTGGATAGGCTCGAGAAAGAGATCGCCACCCTGCTCCA
TGCAGGTAGCACTGGAAAGTCATCCGGCTCGTCTGCCTTGCCAGCAGGGT
CCCCGAGACCGAGCGGTACCGCCTCAGCCTTGACGGCAGGCGAGAGTGAG
ATCGTCCTGGATAGGCTCGAGAAAGAGATCGCCACCCTGCTCCATGCAGG
TAGAGGCGCTAAGAAAGACACCGTCAGGCGACGCCTTCGGATGGGAATCA
ACGAGGTCACCAAGTTCCTCGAAGCCACTGCCGCCGCGGTCACTTCCCAC
AAGAGTACGTGCCCATCCACATCGTCACCGAGCAGAGCCCCCGCAGAGGG
CGAGGGCTCGACGACGACTTGCCGGAGGCGAAACGAAAAAGAGGGCGAAG
GCGGGGGCCTGTCTTCCCCGAGCCCCCAGTCCCGTTTCGCCCTGCAACCT
GCAATTGTCCTAGTCTGCAGGGATGTGCGGCCCGCGAGGCTGGTGGAACA
CGTCCACGCCTTGGTGTCCCTCACCGGAGGCGCTAAGAAAGACACCGTCA
GGCGACGCCTTCGGATGGGAATCAACGAGGTCACCAAGTTCCTCGAAGCC
ACTGCCGCCGCGGTCACTTCCCACAAGAGTACGTGCCCATCCACATCGTC
ACCGAGCAGAGCCCCCGCAGAGGGCGAGGGCTCGACGACGACTTGCCGGA
GGCGAAACGAAAAAGAGGGCGAAGGCGGGGGCCTGTCTTCCCCGAGCCCC
CAGTCCCGTTTCGCCCTGCAACCTGCAATTGTCCTAGTCTGCAGGGATGT
GCGGCCCGCGAGGCTGGTGGAACACGTCCACGCCTTGGTGTCCCTCACCG
GGACTCCCCACCTTGTGCTGTCCGAGTCCAGCACCAGCCTTGGGAGAGTT
TTCGGCTGCAAAACGATGGCGGCTTTGGCCATATGCCCTGCCAGTTCGCC
GCCGCCGTCCCATCCCTCCCCGTCGCCGGCCGGGGGAAGGGGTGCTAAGG
CCGTCACCCCACAGGAACAGGTTGGTAGTCGCAACAGCAGCAATAACATC
GACAGCAGCGGCAAAGGAAGCAATTGCAGTAGCATTGGCAAGATCGGCGG
CGGTGGAGTCAAGGCGCACGGCGACGGCGGCGATGGCGGCGGTGGCTGGA
CGGAGTTGGAGGACGGGGAGTCAAGGGCAGGAGAGGTTGTGGCCAATGAA
AGGGAGGAGGCAGCGGGCAGCGGGGATGGGAGCGGGAGTGATTGGGTAGC
TTCTGACGATCACGCCGCTGTCGACGAGGACGTAGATTCGTTCGTTGAGT
TCCTGAGACGGAAAGTCCGGGCGGCGGCGCCTTCAGCTTTCGCGGAACAA
GACCCGACCGGTCGATGAGGACTCCCCACCTTGTGCTGTCCGAGTCCAGC
ACCAGCCTTGGGAGAGTTTTCGGCTGCAAAACGATGGCGGCTTTGGCCAT
ATGCCCTGCCAGTTCGCCGCCGCCGTCCCATCCCTCCCCGTCGCCGGCCG
GGGGAAGGGGTGCTAAGGCCGTCACCCCACAGGAACAGGTTGGTAGTCGC
AACAGCAGCAATAACATCGACAGCAGCGGCAAAGGAAGCAATTGCAGTAG
CATTGGCAAGATCGGCGGCGGTGGAGTCAAGGCGCACGGCGACGGCGGCG
ATGGCGGCGGTGGCTGGACGGAGTTGGAGGACGGGGAGTCAAGGGCAGGA
GAGGTTGTGGCCAATGAAAGGGAGGAGGCAGCGGGCAGCGGGGATGGGAG
CGGGAGTGATTGGGTAGCTTCTGACGATCACGCCGCTGTCGACGAGGACG
TAGATTCGTTCGTTGAGTTCCTGAGACGGAAAGTCCGGGCGGCGGCGCCT
TCAGCTTTCGCGGAACAAGACCCGACCGGTCGATGA
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