mRNA_P-fluviatile_contig8.14499.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14499.1
Unique NamemRNA_P-fluviatile_contig8.14499.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig8.14499.1 vs. uniprot
Match: D7G646_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G646_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 1.030e-50
Identity = 139/312 (44.55%), Postives = 171/312 (54.81%), Query Frame = 3
Query:  225 SAFPASRLSRFIHAERRRRSTRTKSRSPPRNEPVAGHGSSARDLLGGEHGAAWGVLGWANVVLGRS-APAAAENTAT-------------GVTVSGFGGYGAGAVASSPHRGKS-AAREFTKLDQLDAGHLGRLAAHVLQRRRASDGWTCTCKQSNRAGVQQCEACFLARSQGKEDPGSSGCGGCGDYDDGERERET-----------------DNEAAGVKAVESGKGAEETTLSVREARLWRELSELRDLPVQDSLAVYPAGLDARAMTAMLQGENPLLLCGLMRFLMECDEAVALASDNHLNPLYAHAP 1064
            S   A+R SRF+    R +S+R + RS    EP  G G  A  LLG +HG+AW +L W N V GRS AP A    AT             G T    GG G+ +  SS   G S  + EF+ LD LD GHLGRLA +VL+R ++S+ W C C QSNR   Q CE CF+ R +G    G  G  G    D    ER                   D   +    V   + AEE   S+REA LWR+L +LR+LP QDSLAV+PAGLDA AM AML G  P LL GL+RFLMECDEA+ +  D+HLNPLY+H+P
Sbjct:   13 SPVEAARRSRFVPEYHRPKSSRPRPRSALEKEPP-GSGDPASLLLGSDHGSAWDILQWVNTVFGRSPAPTATPAPATPAAPIGANVSRAAGATRDDTGGAGSSSPWSSRSPGGSHPSGEFSSLDSLDVGHLGRLAGYVLERLKSSERWICGCNQSNRPQAQFCELCFVPRPKGNLVGGGGGGFGRPRSDQPAGERAVKGWPLKGGGSSEKLVGGDERGSDQSKVVGSREAEEPKFSLREANLWRKLLQLRELPTQDSLAVFPAGLDATAMKAMLCGTEPRLLSGLVRFLMECDEALVMRQDDHLNPLYSHSP 323          
BLAST of mRNA_P-fluviatile_contig8.14499.1 vs. uniprot
Match: A0A6H5JL00_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL00_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.730e-28
Identity = 111/305 (36.39%), Postives = 144/305 (47.21%), Query Frame = 3
Query:  225 SAFPASRLSRFIHAERRRRSTRTKSRSPPRNEPVAGHGSSARDLLGGEHGAAWGVLGWANVVLGRSAPAAAENTATGVTVSGFGGYGAGAVASSPHRGKSAAREFTKLDQLDAGHLGRLAAHVLQRRRASDGWTCTCKQSNRAGVQQCEACFLARSQG----------------KEDPGSSGC--------GGCGDYDDGERERETD-NEAAGVKAVESGKGAEETTLSVREARLWRELSELRDLPVQDSLAVYPAGLDARAMTAMLQGENPLLLCGLMRFLMECDEAVALASDNHLNPLYAHAP 1064
            S   A+R SRF+    R +S+R + RS    EP  G G  A  LLG EHG+AW +L W N +LGRS PA    +A              A  S+P                       + A+V +        T    + +  G   CE CF+ R +G                +  P             GG  +   G  ER +D NE AG +       AEE   S+REA LWR+L +L++LP QDSLAV+P GLD  AM AML G  P LL GL+RFLMECDEA+ +  D+HLNPLY+H+P
Sbjct:   13 SPVEAARRSRFVPEYHRPKSSRPRPRSALEKEPP-GSGDPASLLLGSEHGSAWDILQWVNTILGRS-PALTATSAP-------------ATPSAP-----------------------IGANVSR--------TAGATRDDTGGGGFCELCFVPRPKGNLVGGXXXXXXFGRPRRNRPAGERAVKGWPLKSGGSSEKLVGGDERGSDQNEVAGSRE------AEEPKFSLREANLWRKLLQLKELPTQDSLAVFPTGLDTVAMKAMLCGTEPRLLSGLVRFLMECDEALVMRQDDHLNPLYSHSP 265          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G646_ECTSI1.030e-5044.55Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JL00_9PHAE3.730e-2836.39Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:2005227..2010363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue4.3e-51
Seed eggNOG ortholog2880.D7G646
KEGG koko:K17902,ko:K18341,ko:K20242
KEGG Pathwayko04152,ko04919,ko04931,map04152,map04919,map04931
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsKOG4436@1,KOG4436@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons6
Model size3274
Cds size3105
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817216.3992379-CDS-P-fluviatile_contig8:2005226..20062641622817216.3992379-CDS-P-fluviatile_contig8:2005226..2006264Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2005227..2006264 -
1693571537.6270707-CDS-P-fluviatile_contig8:2005226..20062641693571537.6270707-CDS-P-fluviatile_contig8:2005226..2006264Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2005227..2006264 -
1622817216.4098887-CDS-P-fluviatile_contig8:2006591..20077611622817216.4098887-CDS-P-fluviatile_contig8:2006591..2007761Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2006592..2007761 -
1693571537.9188619-CDS-P-fluviatile_contig8:2006591..20077611693571537.9188619-CDS-P-fluviatile_contig8:2006591..2007761Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2006592..2007761 -
1622817216.4211857-CDS-P-fluviatile_contig8:2008057..20081971622817216.4211857-CDS-P-fluviatile_contig8:2008057..2008197Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2008058..2008197 -
1693571538.6401136-CDS-P-fluviatile_contig8:2008057..20081971693571538.6401136-CDS-P-fluviatile_contig8:2008057..2008197Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2008058..2008197 -
1622817216.4324222-CDS-P-fluviatile_contig8:2008474..20087551622817216.4324222-CDS-P-fluviatile_contig8:2008474..2008755Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2008475..2008755 -
1693571538.6585815-CDS-P-fluviatile_contig8:2008474..20087551693571538.6585815-CDS-P-fluviatile_contig8:2008474..2008755Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2008475..2008755 -
1622817216.4425108-CDS-P-fluviatile_contig8:2009079..20091781622817216.4425108-CDS-P-fluviatile_contig8:2009079..2009178Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2009080..2009178 -
1693571538.6707938-CDS-P-fluviatile_contig8:2009079..20091781693571538.6707938-CDS-P-fluviatile_contig8:2009079..2009178Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2009080..2009178 -
1622817216.4522457-CDS-P-fluviatile_contig8:2009819..20101961622817216.4522457-CDS-P-fluviatile_contig8:2009819..2010196Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2009820..2010196 -
1693571538.9552202-CDS-P-fluviatile_contig8:2009819..20101961693571538.9552202-CDS-P-fluviatile_contig8:2009819..2010196Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 2009820..2010196 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817216.4647262-UTR-P-fluviatile_contig8:2010196..20103631622817216.4647262-UTR-P-fluviatile_contig8:2010196..2010363Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2010197..2010363 -
1693571538.971378-UTR-P-fluviatile_contig8:2010196..20103631693571538.971378-UTR-P-fluviatile_contig8:2010196..2010363Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 2010197..2010363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14499.1prot_P-fluviatile_contig8.14499.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 2005227..2010196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14499.1

>prot_P-fluviatile_contig8.14499.1 ID=prot_P-fluviatile_contig8.14499.1|Name=mRNA_P-fluviatile_contig8.14499.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=1035bp
MEEECTARSLNNSGPRLLSSAFPASRLSRFIHAERRRRSTRTKSRSPPRN
EPVAGHGSSARDLLGGEHGAAWGVLGWANVVLGRSAPAAAENTATGVTVS
GFGGYGAGAVASSPHRGKSAAREFTKLDQLDAGHLGRLAAHVLQRRRASD
GWTCTCKQSNRAGVQQCEACFLARSQGKEDPGSSGCGGCGDYDDGERERE
TDNEAAGVKAVESGKGAEETTLSVREARLWRELSELRDLPVQDSLAVYPA
GLDARAMTAMLQGENPLLLCGLMRFLMECDEAVALASDNHLNPLYAHAPL
SVGRKAPSSTRDASPGLACRSTPLPGSSVSPVIVSTAKAEPAGVSTWGSG
SGNGGEARSLRVGDPGGEGRRKPWDIGTSSSSSSSTESKASSVARCLPSP
RPSPLSSSIGAAVGGGPDAAGTDARAVGAPIAQAGAKAVLPVAKEVRMLA
SSGITKPETQQRQSLAGVISPRWSAQASAQAGSFDGPVANVGQGGSDGSG
GGGGGGTGKSYFTRPSAVRAAARAAAMAGRNPFPPPFLPTSQFDSSAPAS
SVASAPPPPSTLPPPPCNENTVPRPAADFSRSIPAAAVASTFSRPIARAE
AAPATAAAKDPALAAGEAGAHANAAATAGWREGAECPRHTWEKRASLFPV
AGSQNGATGSLRADTTATGRYGGGRRERRSTHEKFSSAKAMFEKRPAEPT
TEHKDSGCSSSGDAGGGLPSRRDYSVDERHARAKPGPSQMGEDGEKERAP
SQETREDCLAAEAEQPASDPDFEAQQRVGGAWADEPSARRRQSPTPAAGA
NGERRSGADGVHSDVGGFKDISVDDEKEKLTRGRIFEYGLLGPVSTEEES
EDKRGREQVDEAGPSNIEADEPTTLEPHGLSSPPSPCQGGTRAKSSPDMS
PPAVMQKLSFTAKRPGEGRAAPELATADEPSRLPAPGAFGVGHDGGSIVA
SAAASSQAPTASAKGEGVTAVDSPKSDEDADLEEATTASLVATTASAQPK
AHASALICATSSSSSSFRTTSSDGKGGATGTTTIT
back to top

mRNA from alignment at P-fluviatile_contig8:2005227..2010363-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14499.1 ID=mRNA_P-fluviatile_contig8.14499.1|Name=mRNA_P-fluviatile_contig8.14499.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5137bp|location=Sequence derived from alignment at P-fluviatile_contig8:2005227..2010363- (Porterinema fluviatile SAG_2381)
CAATTTCTCACGCAGATTGTGCAACAGCGGAGCACTAGGTTCCTCCCGTG ATGCACCCGTAACATCACCGATGTGTGGGAATCGTACGCTGGAGAAAAGT TGTCGAGTTTCTTCACAATAAACAGCTCCTCGGCAGTGCAGTACACGCGC GTTCCTACACGGGCAGGATGGAGGAGGAGTGTACTGCGAGAAGCTTGAAC AACAGCGGACCGCGCTTGTTGTCTTCTGCCTTTCCGGCGAGCCGGCTATC GCGATTCATTCATGCCGAGCGCAGGCGTAGGTCGACGAGGACAAAGTCCC GTTCCCCTCCGCGGAACGAGCCGGTAGCAGGCCACGGCTCAAGCGCCAGA GACCTCCTCGGAGGCGAGCACGGTGCGGCATGGGGTGTTCTCGGGTGGGC GAACGTTGTTCTTGGAAGAAGCGCTCCTGCGGCTGCGGAAAACACTGCTA CGGGTGTTACGGTTAGCGGCTTTGGAGGATACGGAGCCGGCGCGGTGGCG TCTTCTCCTCATCGTGGCAAATCGGCCGCCCGGGAATTCACCAAGTGAGC TCGAGTCCGCGCACCTCTTGCACACTTGCGCGCCTGCCTGTGAGCACATT GAAATCATGACCGCATCGGCGAGGCGTTCACCCCGAAAGACCGACTCGGT CATTGCAGACCATGTAGCGATGAATTCCTGTCTGTAATGTGATGCAGGAA CAAGTTCAATATTATGTTTAGCTCTACGAGCTGCGTGGAGAGTAAACCTA ATCGCTTCGCAGCTTGAAAGGAACATATCGCAACCTGGTTGCGTACAGCC ACAATGCTGGCATGTGCTCTTCGGGCGGCTTAAGGTCAGGGTGAAAGCAA GCGTAAGGCCGTGATGTCGCATCACTCGCTGATAGCCGTCCCTCGTCCCC AGATCGTATTGATCTATTGTGAAGATTCGCACCGGTCAGGCCCCATGCGT TTGCAGTGAACGCATGCGGATGGGCACAGCAACACCGCCGAAGTCTCGAG CTAGTGACTGTTGTCGTGCTCGCGTTACATTGTTGATGTACTTGAAGCTT ATGCACGCGCGCGGGTGAGTTGAGGGAGAAGATACCAGTCGTTAGCGGGC CGCTGACCAACCGGCTTCCACGGAGACATGGCCGCGTTGTCGCCGTCACA CGAATGTTCGCACGATAAACGACGCCGCCGAACAGGTTGGACCAGCTGGA CGCCGGGCACCTCGGGCGGTTGGCGGCCCACGTGCTCCAGCGGCGCAGGG CCTCCGACGGCTGGACCTGCACTTGCAAGCAGAGGTGCGGCTGCTGCCTC CCCCTCCGACCCTTTTCTTTTTCTCTCTGGCAACAACTTTTTCCTGTGTG CGCCGATGTGGTATCGCCCCCTTGTCTTCAGTGAACCGCTCTTCCTGCCA TAGGCCCGGCACCGGCACCGTCAATACTGGTAGTCCAATTCATCCGCACT GCGCGGTCGCTCCTCCGGGTCACGTGCGCCTGCAAGTTGTCGATTATTGC CATTCGTTCTCCCCCTTCAGTCTCAGTCTCAACGCACTGGCTCTCCGTCC TGTCTGCCTACCGGCTGTGTGTCCTCGATGCTCTCGGTCGCGGCGATACA CACCACAGCAACCGGGCGGGTGTGCAGCAGTGCGAGGCATGTTTCTTGGC TCGCTCTCAGGGAAAGGAAGACCCCGGCAGTAGTGGCTGCGGCGGCTGCG GCGACTACGATGACGGAGAACGGGAACGGGAAACAGACAACGAAGCCGCG GGTGTCAAGGCCGTTGAGAGCGGCAAGGGCGCGGAGGAGACCACCTTAAG CGTGCGCGAAGCGAGGCTATGGCGCGAGCTATCGGAGCTGAGAGACCTCC CGGTGCAGGACTCTCTGGCGGTGTATCCTGCTGGGCTAGGTGAGCACGAA AAATTCAATTCAGCGGCCTGTTCCTGTTCGCTGTGCCTGTTTTCCGCACG TGTTCGCATTGCCGCCGCTCCTACAGTTAAGTTGCTCATTTACATTCCTC CTTTCTGTGCGGATGGGACATCGGAAGTTGCTTTCGCGCGGCCTGCCGCC CCCGCGTTATCACTCCTGGAAGTCAACTTCTTGTCGGCGCATGTATTTGA CCACCACAATGCACACGCCTATTTGTCAACGACCAACTTCATCATTTATG CTCCCTCCGCGCGCAGACGCCAGGGCAATGACGGCCATGCTTCAGGGCGA GAACCCGCTGCTCCTTTGTGGCTTGATGCGCTTCCTCATGGAGTGCGACG AGGCGGTGGCGTTGGCAAGCGACAACCACTTGAACCCACTCTATGCCCAC GCGCCGGTCAGTCGGCTTACGGTTGTCGCGAAGGCTGTGTATGCGGAAAC CGGTTAGATTAGAAAAGGTTGGGTTTCATAGCGCAATAGGAGCTTGATTG CTAGGCGAGGGATAAGCACGCATGCAGCGTGTGTAGAGAGATATTCCCAG GCACGTTCATCTGCACTCAGCACCGGGTGGTGTTGCGACGGACTCACCCT CGCGCGCTGACCCCGGTGTCCATCCTTTTCCCGCCTCCATCCCTATCCCG CCCCGCCCGCCCATTCTGTGCTCGATTCCTCTCCCGTTTTCGTGCACAAA AGCTTTCCGTGGGGAGGAAGGCCCCGAGCAGCACCCGCGACGCCTCCCCA GGCTTGGCGTGCAGATCCACCCCTCTACCTGGGTCGAGCGTATCGCCAGT GATCGTGTCTACGGCGAAGGCTGAACCTGCAGGGGTTTCGACGTGGGGCA GCGGCAGCGGCAATGGCGGCGAGGCTCGGTCTCTTCGGGTAGGGGATCCC GGCGGCGAAGGCCGACGAAAACCGTGGGATATCGGCACCTCCTCCTCGTC TTCCTCGTCCACGGAGTCCAAAGCCTCATCTGTCGCTCGGTGTTTGCCGT CCCCGCGCCCGTCTCCGCTTTCGTCGTCGATCGGGGCAGCAGTGGGGGGG GGTCCGGACGCGGCTGGGACCGATGCCCGCGCTGTTGGAGCCCCAATCGC GCAGGCAGGCGCAAAGGCGGTTCTGCCAGTAGCGAAAGAAGTGCGAATGC TTGCCTCTTCGGGGATCACGAAGCCTGAAACCCAGCAGCGGCAATCGTTG GCCGGCGTCATTTCTCCGAGATGGAGCGCCCAGGCTTCGGCGCAAGCAGG GAGCTTTGACGGCCCCGTCGCGAACGTCGGTCAAGGAGGCAGTGATGGCA GCGGCGGCGGCGGCGGTGGCGGGACCGGAAAGAGCTACTTCACCCGGCCT TCCGCGGTGAGAGCTGCGGCGAGAGCGGCGGCAATGGCTGGAAGAAACCC TTTCCCCCCTCCGTTTCTTCCTACTTCTCAGTTCGACTCGAGTGCGCCGG CGTCGAGTGTCGCATCGGCGCCGCCCCCGCCGTCAACGCTGCCACCGCCG CCGTGCAACGAGAACACGGTCCCCCGGCCGGCGGCTGACTTCAGTCGTTC GATTCCGGCCGCCGCTGTAGCTTCGACGTTTTCTCGTCCCATCGCACGCG CAGAAGCAGCCCCGGCGACCGCCGCGGCGAAGGACCCCGCGCTGGCGGCT GGAGAAGCGGGAGCACACGCAAACGCGGCGGCGACGGCGGGGTGGCGCGA GGGCGCCGAGTGTCCGCGGCACACATGGGAGAAACGAGCGAGCCTTTTTC CTGTCGCTGGCTCGCAGAACGGTGCGACCGGCAGCCTCCGCGCGGACACG ACGGCGACCGGTCGGTATGGCGGCGGCCGCAGGGAACGCCGCAGCACTCA CGAGAAATTCTCATCGGCGAAGGTAAATACATGTTCACACCAAGCAGTGT TGACGACGAGCTGTTTTGAGGTTTACGCTTTGATCGGCTGTGGCAGTGTT TGTTGAGCTATCTCACGTGACTCCTGACGCTGGTCGTTCTGGGTGCTCGT GTCAGCGGGTTTCACACAGTGTTCTTCCGTTTTGGCACGCTCTTGGTGCC ATTCTCTGGGACGCAAGAGCTCTTGCAGGCAGTGGGTATGTGCTGCTGAC GTGAACGTGCTCAAGTTCAACTCGAATGATTGTCCAGTGCCGACCGCGAC TGCTGCGGTAATCTGTTCTGACATGGCATTCATGTGACGTCACTCGCAGG CCATGTTTGAGAAGCGACCCGCTGAGCCCACGACGGAACACAAGGACTCG GGTTGCAGCAGTAGTGGGGACGCCGGCGGCGGATTGCCATCGCGCAGGGA CTATTCTGTGGACGAGAGGCATGCGCGGGCGAAACCCGGGCCGTCGCAGA TGGGGGAGGACGGAGAGAAGGAACGAGCGCCTTCACAAGAGACCAGGGAG GATTGCTTGGCTGCAGAAGCAGAACAGCCGGCATCAGATCCGGACTTTGA AGCACAGCAACGGGTAGGCGGAGCCTGGGCTGACGAGCCATCCGCGCGAA GGAGGCAATCCCCGACTCCCGCCGCGGGCGCAAATGGCGAGAGAAGGAGC GGTGCAGATGGTGTGCACTCTGATGTTGGGGGCTTTAAGGACATCTCCGT GGATGACGAAAAGGAGAAGCTGACGCGAGGCCGTATCTTCGAGTACGGAC TGCTCGGACCTGTCAGCACCGAGGAGGAGAGTGAAGACAAACGAGGTCGG GAGCAAGTTGATGAGGCCGGCCCTTCCAATATTGAGGCCGATGAGCCGAC GACACTGGAACCGCACGGGTTGAGCTCGCCACCTTCCCCCTGCCAAGGAG GCACGCGTGCCAAAAGTAGCCCAGACATGTCACCCCCCGCGGTGATGCAA AAGCTATCCTTTACGGCAAAAAGACCCGGCGAAGGTCGAGCTGCGCCAGA GCTCGCGACGGCGGATGAGCCATCCCGTTTGCCAGCCCCGGGAGCTTTCG GTGTGGGACATGACGGGGGAAGTATCGTCGCTTCTGCTGCTGCGTCGTCC CAGGCACCGACAGCTTCCGCAAAGGGTGAGGGTGTCACCGCTGTTGATTC CCCGAAATCCGACGAGGACGCCGATTTGGAGGAAGCGACGACGGCGTCGC TGGTTGCGACCACCGCTTCTGCTCAGCCGAAGGCGCACGCAAGCGCCCTC ATCTGCGCAACGTCGTCTTCGTCGTCGTCGTTTCGGACGACGTCGTCGGA CGGGAAGGGGGGGGCGACTGGTACGACTACTATTACG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig8:2005227..2010363-

>mRNA_P-fluviatile_contig8.14499.1 ID=mRNA_P-fluviatile_contig8.14499.1|Name=mRNA_P-fluviatile_contig8.14499.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=6210bp|location=Sequence derived from alignment at P-fluviatile_contig8:2005227..2010363- (Porterinema fluviatile SAG_2381)
ATGGAGGAGGAGTGTACTGCGAGAAGCTTGAACAACAGCGGACCGCGCTT
GTTGTCTTCTGCCTTTCCGGCGAGCCGGCTATCGCGATTCATTCATGCCG
AGCGCAGGCGTAGGTCGACGAGGACAAAGTCCCGTTCCCCTCCGCGGAAC
GAGCCGGTAGCAGGCCACGGCTCAAGCGCCAGAGACCTCCTCGGAGGCGA
GCACGGTGCGGCATGGGGTGTTCTCGGGTGGGCGAACGTTGTTCTTGGAA
GAAGCGCTCCTGCGGCTGCGGAAAACACTGCTACGGGTGTTACGGTTAGC
GGCTTTGGAGGATACGGAGCCGGCGCGGTGGCGTCTTCTCCTCATCGTGG
CAAATCGGCCGCCCGGGAATTCACCAAATGGAGGAGGAGTGTACTGCGAG
AAGCTTGAACAACAGCGGACCGCGCTTGTTGTCTTCTGCCTTTCCGGCGA
GCCGGCTATCGCGATTCATTCATGCCGAGCGCAGGCGTAGGTCGACGAGG
ACAAAGTCCCGTTCCCCTCCGCGGAACGAGCCGGTAGCAGGCCACGGCTC
AAGCGCCAGAGACCTCCTCGGAGGCGAGCACGGTGCGGCATGGGGTGTTC
TCGGGTGGGCGAACGTTGTTCTTGGAAGAAGCGCTCCTGCGGCTGCGGAA
AACACTGCTACGGGTGTTACGGTTAGCGGCTTTGGAGGATACGGAGCCGG
CGCGGTGGCGTCTTCTCCTCATCGTGGCAAATCGGCCGCCCGGGAATTCA
CCAAGTTGGACCAGCTGGACGCCGGGCACCTCGGGCGGTTGGCGGCCCAC
GTGCTCCAGCGGCGCAGGGCCTCCGACGGCTGGACCTGCACTTGCAAGCA
GAGGTTGGACCAGCTGGACGCCGGGCACCTCGGGCGGTTGGCGGCCCACG
TGCTCCAGCGGCGCAGGGCCTCCGACGGCTGGACCTGCACTTGCAAGCAG
AGCAACCGGGCGGGTGTGCAGCAGTGCGAGGCATGTTTCTTGGCTCGCTC
TCAGGGAAAGGAAGACCCCGGCAGTAGTGGCTGCGGCGGCTGCGGCGACT
ACGATGACGGAGAACGGGAACGGGAAACAGACAACGAAGCCGCGGGTGTC
AAGGCCGTTGAGAGCGGCAAGGGCGCGGAGGAGACCACCTTAAGCGTGCG
CGAAGCGAGGCTATGGCGCGAGCTATCGGAGCTGAGAGACCTCCCGGTGC
AGGACTCTCTGGCGGTGTATCCTGCTGGGCTAGCAACCGGGCGGGTGTGC
AGCAGTGCGAGGCATGTTTCTTGGCTCGCTCTCAGGGAAAGGAAGACCCC
GGCAGTAGTGGCTGCGGCGGCTGCGGCGACTACGATGACGGAGAACGGGA
ACGGGAAACAGACAACGAAGCCGCGGGTGTCAAGGCCGTTGAGAGCGGCA
AGGGCGCGGAGGAGACCACCTTAAGCGTGCGCGAAGCGAGGCTATGGCGC
GAGCTATCGGAGCTGAGAGACCTCCCGGTGCAGGACTCTCTGGCGGTGTA
TCCTGCTGGGCTAGACGCCAGGGCAATGACGGCCATGCTTCAGGGCGAGA
ACCCGCTGCTCCTTTGTGGCTTGATGCGCTTCCTCATGGAGTGCGACGAG
GCGGTGGCGTTGGCAAGCGACAACCACTTGAACCCACTCTATGCCCACGC
GCCGACGCCAGGGCAATGACGGCCATGCTTCAGGGCGAGAACCCGCTGCT
CCTTTGTGGCTTGATGCGCTTCCTCATGGAGTGCGACGAGGCGGTGGCGT
TGGCAAGCGACAACCACTTGAACCCACTCTATGCCCACGCGCCGCTTTCC
GTGGGGAGGAAGGCCCCGAGCAGCACCCGCGACGCCTCCCCAGGCTTGGC
GTGCAGATCCACCCCTCTACCTGGGTCGAGCGTATCGCCAGTGATCGTGT
CTACGGCGAAGGCTGAACCTGCAGGGGTTTCGACGTGGGGCAGCGGCAGC
GGCAATGGCGGCGAGGCTCGGTCTCTTCGGGTAGGGGATCCCGGCGGCGA
AGGCCGACGAAAACCGTGGGATATCGGCACCTCCTCCTCGTCTTCCTCGT
CCACGGAGTCCAAAGCCTCATCTGTCGCTCGGTGTTTGCCGTCCCCGCGC
CCGTCTCCGCTTTCGTCGTCGATCGGGGCAGCAGTGGGGGGGGGTCCGGA
CGCGGCTGGGACCGATGCCCGCGCTGTTGGAGCCCCAATCGCGCAGGCAG
GCGCAAAGGCGGTTCTGCCAGTAGCGAAAGAAGTGCGAATGCTTGCCTCT
TCGGGGATCACGAAGCCTGAAACCCAGCAGCGGCAATCGTTGGCCGGCGT
CATTTCTCCGAGATGGAGCGCCCAGGCTTCGGCGCAAGCAGGGAGCTTTG
ACGGCCCCGTCGCGAACGTCGGTCAAGGAGGCAGTGATGGCAGCGGCGGC
GGCGGCGGTGGCGGGACCGGAAAGAGCTACTTCACCCGGCCTTCCGCGGT
GAGAGCTGCGGCGAGAGCGGCGGCAATGGCTGGAAGAAACCCTTTCCCCC
CTCCGTTTCTTCCTACTTCTCAGTTCGACTCGAGTGCGCCGGCGTCGAGT
GTCGCATCGGCGCCGCCCCCGCCGTCAACGCTGCCACCGCCGCCGTGCAA
CGAGAACACGGTCCCCCGGCCGGCGGCTGACTTCAGTCGTTCGATTCCGG
CCGCCGCTGTAGCTTCGACGTTTTCTCGTCCCATCGCACGCGCAGAAGCA
GCCCCGGCGACCGCCGCGGCGAAGGACCCCGCGCTGGCGGCTGGAGAAGC
GGGAGCACACGCAAACGCGGCGGCGACGGCGGGGTGGCGCGAGGGCGCCG
AGTGTCCGCGGCACACATGGGAGAAACGAGCGAGCCTTTTTCCTGTCGCT
GGCTCGCAGAACGGTGCGACCGGCAGCCTCCGCGCGGACACGACGGCGAC
CGGTCGGTATGGCGGCGGCCGCAGGGAACGCCGCAGCACTCACGAGAAAT
TCTCATCGGCGAAGCTTTCCGTGGGGAGGAAGGCCCCGAGCAGCACCCGC
GACGCCTCCCCAGGCTTGGCGTGCAGATCCACCCCTCTACCTGGGTCGAG
CGTATCGCCAGTGATCGTGTCTACGGCGAAGGCTGAACCTGCAGGGGTTT
CGACGTGGGGCAGCGGCAGCGGCAATGGCGGCGAGGCTCGGTCTCTTCGG
GTAGGGGATCCCGGCGGCGAAGGCCGACGAAAACCGTGGGATATCGGCAC
CTCCTCCTCGTCTTCCTCGTCCACGGAGTCCAAAGCCTCATCTGTCGCTC
GGTGTTTGCCGTCCCCGCGCCCGTCTCCGCTTTCGTCGTCGATCGGGGCA
GCAGTGGGGGGGGGTCCGGACGCGGCTGGGACCGATGCCCGCGCTGTTGG
AGCCCCAATCGCGCAGGCAGGCGCAAAGGCGGTTCTGCCAGTAGCGAAAG
AAGTGCGAATGCTTGCCTCTTCGGGGATCACGAAGCCTGAAACCCAGCAG
CGGCAATCGTTGGCCGGCGTCATTTCTCCGAGATGGAGCGCCCAGGCTTC
GGCGCAAGCAGGGAGCTTTGACGGCCCCGTCGCGAACGTCGGTCAAGGAG
GCAGTGATGGCAGCGGCGGCGGCGGCGGTGGCGGGACCGGAAAGAGCTAC
TTCACCCGGCCTTCCGCGGTGAGAGCTGCGGCGAGAGCGGCGGCAATGGC
TGGAAGAAACCCTTTCCCCCCTCCGTTTCTTCCTACTTCTCAGTTCGACT
CGAGTGCGCCGGCGTCGAGTGTCGCATCGGCGCCGCCCCCGCCGTCAACG
CTGCCACCGCCGCCGTGCAACGAGAACACGGTCCCCCGGCCGGCGGCTGA
CTTCAGTCGTTCGATTCCGGCCGCCGCTGTAGCTTCGACGTTTTCTCGTC
CCATCGCACGCGCAGAAGCAGCCCCGGCGACCGCCGCGGCGAAGGACCCC
GCGCTGGCGGCTGGAGAAGCGGGAGCACACGCAAACGCGGCGGCGACGGC
GGGGTGGCGCGAGGGCGCCGAGTGTCCGCGGCACACATGGGAGAAACGAG
CGAGCCTTTTTCCTGTCGCTGGCTCGCAGAACGGTGCGACCGGCAGCCTC
CGCGCGGACACGACGGCGACCGGTCGGTATGGCGGCGGCCGCAGGGAACG
CCGCAGCACTCACGAGAAATTCTCATCGGCGAAGGCCATGTTTGAGAAGC
GACCCGCTGAGCCCACGACGGAACACAAGGACTCGGGTTGCAGCAGTAGT
GGGGACGCCGGCGGCGGATTGCCATCGCGCAGGGACTATTCTGTGGACGA
GAGGCATGCGCGGGCGAAACCCGGGCCGTCGCAGATGGGGGAGGACGGAG
AGAAGGAACGAGCGCCTTCACAAGAGACCAGGGAGGATTGCTTGGCTGCA
GAAGCAGAACAGCCGGCATCAGATCCGGACTTTGAAGCACAGCAACGGGT
AGGCGGAGCCTGGGCTGACGAGCCATCCGCGCGAAGGAGGCAATCCCCGA
CTCCCGCCGCGGGCGCAAATGGCGAGAGAAGGAGCGGTGCAGATGGTGTG
CACTCTGATGTTGGGGGCTTTAAGGACATCTCCGTGGATGACGAAAAGGA
GAAGCTGACGCGAGGCCGTATCTTCGAGTACGGACTGCTCGGACCTGTCA
GCACCGAGGAGGAGAGTGAAGACAAACGAGGTCGGGAGCAAGTTGATGAG
GCCGGCCCTTCCAATATTGAGGCCGATGAGCCGACGACACTGGAACCGCA
CGGGTTGAGCTCGCCACCTTCCCCCTGCCAAGGAGGCACGCGTGCCAAAA
GTAGCCCAGACATGTCACCCCCCGCGGTGATGCAAAAGCTATCCTTTACG
GCAAAAAGACCCGGCGAAGGTCGAGCTGCGCCAGAGCTCGCGACGGCGGA
TGAGCCATCCCGTTTGCCAGCCCCGGGAGCTTTCGGTGTGGGACATGACG
GGGGAAGTATCGTCGCTTCTGCTGCTGCGTCGTCCCAGGCACCGACAGCT
TCCGCAAAGGGTGAGGGTGTCACCGCTGTTGATTCCCCGAAATCCGACGA
GGACGCCGATTTGGAGGAAGCGACGACGGCGTCGCTGGTTGCGACCACCG
CTTCTGCTCAGCCGAAGGCGCACGCAAGCGCCCTCATCTGCGCAACGTCG
TCTTCGTCGTCGTCGTTTCGGACGACGTCGTCGGACGGGAAGGGGGGGGC
GACTGGTACGACTACTATTACGGCCATGTTTGAGAAGCGACCCGCTGAGC
CCACGACGGAACACAAGGACTCGGGTTGCAGCAGTAGTGGGGACGCCGGC
GGCGGATTGCCATCGCGCAGGGACTATTCTGTGGACGAGAGGCATGCGCG
GGCGAAACCCGGGCCGTCGCAGATGGGGGAGGACGGAGAGAAGGAACGAG
CGCCTTCACAAGAGACCAGGGAGGATTGCTTGGCTGCAGAAGCAGAACAG
CCGGCATCAGATCCGGACTTTGAAGCACAGCAACGGGTAGGCGGAGCCTG
GGCTGACGAGCCATCCGCGCGAAGGAGGCAATCCCCGACTCCCGCCGCGG
GCGCAAATGGCGAGAGAAGGAGCGGTGCAGATGGTGTGCACTCTGATGTT
GGGGGCTTTAAGGACATCTCCGTGGATGACGAAAAGGAGAAGCTGACGCG
AGGCCGTATCTTCGAGTACGGACTGCTCGGACCTGTCAGCACCGAGGAGG
AGAGTGAAGACAAACGAGGTCGGGAGCAAGTTGATGAGGCCGGCCCTTCC
AATATTGAGGCCGATGAGCCGACGACACTGGAACCGCACGGGTTGAGCTC
GCCACCTTCCCCCTGCCAAGGAGGCACGCGTGCCAAAAGTAGCCCAGACA
TGTCACCCCCCGCGGTGATGCAAAAGCTATCCTTTACGGCAAAAAGACCC
GGCGAAGGTCGAGCTGCGCCAGAGCTCGCGACGGCGGATGAGCCATCCCG
TTTGCCAGCCCCGGGAGCTTTCGGTGTGGGACATGACGGGGGAAGTATCG
TCGCTTCTGCTGCTGCGTCGTCCCAGGCACCGACAGCTTCCGCAAAGGGT
GAGGGTGTCACCGCTGTTGATTCCCCGAAATCCGACGAGGACGCCGATTT
GGAGGAAGCGACGACGGCGTCGCTGGTTGCGACCACCGCTTCTGCTCAGC
CGAAGGCGCACGCAAGCGCCCTCATCTGCGCAACGTCGTCTTCGTCGTCG
TCGTTTCGGACGACGTCGTCGGACGGGAAGGGGGGGGCGACTGGTACGAC
TACTATTACG
back to top