mRNA_P-fluviatile_contig8.14448.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14448.1
Unique NamemRNA_P-fluviatile_contig8.14448.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14448.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 2.140e-19
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 3 
Query:  192 RERERLMPTTRHFHAEVEVSLTCTRCSYSRRRRELYRDFSLDIPDPATRQPQENRGVDGGQGKRGI--------GAYGLDTLLEGFFKPA 437
            R++ERLMPTTRHFHAEVE +LTCT+CSYSRRRRELYRDFSLD+P+PA R                         G  GL  LL+ FF+P+
Sbjct:  635 RQKERLMPTTRHFHAEVEATLTCTKCSYSRRRRELYRDFSLDVPEPARRXXXXXXXXXXXXXXXXXXXXXXXDGGVSGLGDLLDSFFQPS 724
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BLAST of mRNA_P-fluviatile_contig8.14448.1 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.920e-19
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 3 
Query:  192 RERERLMPTTRHFHAEVEVSLTCTRCSYSRRRRELYRDFSLDIPDPATR 338
            R++ERLMPTTRHFHAEVE +LTCT+CSYSRRRRELYRDFSLD+P+PA R
Sbjct:  735 RQKERLMPTTRHFHAEVEATLTCTKCSYSRRRRELYRDFSLDVPEPARR 783
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BLAST of mRNA_P-fluviatile_contig8.14448.1 vs. uniprot
Match: A0A7S0K999_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0K999_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.290e-5
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 3 
Query:  207 LMPTTRHFHAEVEVSLTCTRCSYSRRRRELYRDFSLDI 320
            L PT R+F  EVEVSLTC  C Y+R R+ELYR  SLD+
Sbjct:  373 LFPTQRNFATEVEVSLTCCSCMYTRTRKELYRHLSLDV 410
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BLAST of mRNA_P-fluviatile_contig8.14448.1 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.570e-5
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:  207 LMPTTRHFHAEVEVSLTCTRCSYSRRRRELYRDFSLDI 320
            L+P+ R FHAEV++SL C  C Y+RRR E Y DFSLD+
Sbjct:  618 LLPSARAFHAEVDMSLRCRGCGYTRRRPEPYMDFSLDV 655
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G2P5_ECTSI2.140e-1954.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUE2_9PHAE9.920e-1983.67USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S0K999_9STRA3.290e-563.16Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lept... [more]
A0A835YKZ9_9STRA3.570e-560.53USP domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1527944..1528626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog2880.D7G2P5
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2EX8U@1,2SYYR@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size438
Cds size414
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14448.1prot_P-fluviatile_contig8.14448.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1527944..1528603 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817215.9374802-CDS-P-fluviatile_contig8:1527943..15281351622817215.9374802-CDS-P-fluviatile_contig8:1527943..1528135Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1527944..1528135 -
1693571534.2790802-CDS-P-fluviatile_contig8:1527943..15281351693571534.2790802-CDS-P-fluviatile_contig8:1527943..1528135Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1527944..1528135 -
1622817215.9475486-CDS-P-fluviatile_contig8:1528381..15286031622817215.9475486-CDS-P-fluviatile_contig8:1528381..1528603Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1528382..1528603 -
1693571534.291897-CDS-P-fluviatile_contig8:1528381..15286031693571534.291897-CDS-P-fluviatile_contig8:1528381..1528603Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1528382..1528603 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817215.958405-UTR-P-fluviatile_contig8:1528603..15286261622817215.958405-UTR-P-fluviatile_contig8:1528603..1528626Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1528604..1528626 -
1693571534.3038018-UTR-P-fluviatile_contig8:1528603..15286261693571534.3038018-UTR-P-fluviatile_contig8:1528603..1528626Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1528604..1528626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14448.1

>prot_P-fluviatile_contig8.14448.1 ID=prot_P-fluviatile_contig8.14448.1|Name=mRNA_P-fluviatile_contig8.14448.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=138bp
MLKDEGGAGGRGSTPEAEPTAEAQVAATEEQGAGGEEVEPEDKREGEEEL
ASREQERERERLMPTTRHFHAEVEVSLTCTRCSYSRRRRELYRDFSLDIP
DPATRQPQENRGVDGGQGKRGIGAYGLDTLLEGFFKPA
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mRNA from alignment at P-fluviatile_contig8:1527944..1528626-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14448.1 ID=mRNA_P-fluviatile_contig8.14448.1|Name=mRNA_P-fluviatile_contig8.14448.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=683bp|location=Sequence derived from alignment at P-fluviatile_contig8:1527944..1528626- (Porterinema fluviatile SAG_2381)
GTGGGATCCAGGACGTCGAAGAAATGTTGAAGGACGAGGGGGGCGCGGGA
GGGCGCGGGAGCACACCAGAGGCGGAGCCAACGGCGGAGGCGCAGGTAGC
GGCAACGGAGGAACAGGGGGCTGGTGGAGAGGAAGTGGAACCGGAGGACA
AGAGGGAAGGAGAGGAGGAGCTGGCGTCGAGGGAGCAGGAGCGCGAGCGC
GAGCGGCTCATGCCGACCACAAGGCACTTCCACGCGGAGGTGGAGGTGCG
TTTCGGAGCTGATTTGCTGTTTTTGCTGTTCAGGGGGACGTCACATCCAG
ATGTTTGTTCCCGTTGCTGTTGGTGTCTTCGCACTTGTGCGGGGTTGAAA
AAAAACAGCGACCTTGTGACCACTTTTTTATGATCCCTATTTCCACGGGG
GTGTACTCGTGCCCTTGCTTAACGTCGCCGTCTCCCGCCCCCCTATCTAT
TCCTCCCAACGCCACGCGATGCCCCCACACTACTCCGATAGGTTTCTCTC
ACATGCACGCGGTGCTCCTACTCCAGGCGACGGCGGGAGCTGTACCGCGA
TTTTTCACTGGACATCCCGGACCCGGCCACGCGGCAGCCGCAGGAGAATC
GCGGGGTAGATGGGGGGCAAGGGAAGAGAGGAATCGGCGCCTATGGGCTG
GACACGCTTTTGGAGGGGTTTTTTAAGCCGGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1527944..1528626-

>mRNA_P-fluviatile_contig8.14448.1 ID=mRNA_P-fluviatile_contig8.14448.1|Name=mRNA_P-fluviatile_contig8.14448.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=828bp|location=Sequence derived from alignment at P-fluviatile_contig8:1527944..1528626- (Porterinema fluviatile SAG_2381)
ATGTTGAAGGACGAGGGGGGCGCGGGAGGGCGCGGGAGCACACCAGAGGC
GGAGCCAACGGCGGAGGCGCAGGTAGCGGCAACGGAGGAACAGGGGGCTG
GTGGAGAGGAAGTGGAACCGGAGGACAAGAGGGAAGGAGAGGAGGAGCTG
GCGTCGAGGGAGCAGGAGCGCGAGCGCGAGCGGCTCATGCCGACCACAAG
GCACTTCCACGCGGAGGTGGAGATGTTGAAGGACGAGGGGGGCGCGGGAG
GGCGCGGGAGCACACCAGAGGCGGAGCCAACGGCGGAGGCGCAGGTAGCG
GCAACGGAGGAACAGGGGGCTGGTGGAGAGGAAGTGGAACCGGAGGACAA
GAGGGAAGGAGAGGAGGAGCTGGCGTCGAGGGAGCAGGAGCGCGAGCGCG
AGCGGCTCATGCCGACCACAAGGCACTTCCACGCGGAGGTGGAGGTTTCT
CTCACATGCACGCGGTGCTCCTACTCCAGGCGACGGCGGGAGCTGTACCG
CGATTTTTCACTGGACATCCCGGACCCGGCCACGCGGCAGCCGCAGGAGA
ATCGCGGGGTAGATGGGGGGCAAGGGAAGAGAGGAATCGGCGCCTATGGG
CTGGACACGCTTTTGGAGGGGTTTTTTAAGCCGGCGGTTTCTCTCACATG
CACGCGGTGCTCCTACTCCAGGCGACGGCGGGAGCTGTACCGCGATTTTT
CACTGGACATCCCGGACCCGGCCACGCGGCAGCCGCAGGAGAATCGCGGG
GTAGATGGGGGGCAAGGGAAGAGAGGAATCGGCGCCTATGGGCTGGACAC
GCTTTTGGAGGGGTTTTTTAAGCCGGCG
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