mRNA_P-fluviatile_contig8.14418.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14418.1
Unique NamemRNA_P-fluviatile_contig8.14418.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14418.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.030e-14
Identity = 41/88 (46.59%), Postives = 47/88 (53.41%), Query Frame = 3 
Query:    3 DGGMTHAVETYLPGT-VHLHCLWHVMKN------------------------------ACSDAWMEILRHVKGVGGKCEPYINGYLMK 173
            D GMTHAVET+LP T VHL+CLWHVMKN                              ACSDAW EI RHVKG    CE Y+ G+L++
Sbjct:  208 DAGMTHAVETFLPSTTVHLYCLWHVMKNVRKNCARALGKKASRFYRLLHAAAFAATEEACSDAWSEIFRHVKG--SDCEEYVTGHLLR 293
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BLAST of mRNA_P-fluviatile_contig8.14418.1 vs. uniprot
Match: D8LCW1_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW1_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 6.170e-6
Identity = 23/42 (54.76%), Postives = 26/42 (61.90%), Query Frame = 3 
Query:    3 DGGMTHAVETYLPGTVHLHCLWHVMKNACSDAWMEILRHVKG 128
            D  MT+A  T LP TVHLHCLWHVMKN        + +H KG
Sbjct:   25 DAAMTNAARTLLPRTVHLHCLWHVMKN--------VRKHYKG 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE2.030e-1446.59SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LCW1_ECTSI6.170e-654.76MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1212609..1213184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size311
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14418.1prot_P-fluviatile_contig8.14418.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1212620..1213049 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817215.751961-UTR-P-fluviatile_contig8:1212608..12126191622817215.751961-UTR-P-fluviatile_contig8:1212608..1212619Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1212609..1212619 +
1693571534.1847007-UTR-P-fluviatile_contig8:1212608..12126191693571534.1847007-UTR-P-fluviatile_contig8:1212608..1212619Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1212609..1212619 +
1622817215.7920945-UTR-P-fluviatile_contig8:1213049..12131841622817215.7920945-UTR-P-fluviatile_contig8:1213049..1213184Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1213050..1213184 +
1693571534.2104058-UTR-P-fluviatile_contig8:1213049..12131841693571534.2104058-UTR-P-fluviatile_contig8:1213049..1213184Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1213050..1213184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817215.7629356-CDS-P-fluviatile_contig8:1212619..12126911622817215.7629356-CDS-P-fluviatile_contig8:1212619..1212691Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1212620..1212691 +
1693571534.1928606-CDS-P-fluviatile_contig8:1212619..12126911693571534.1928606-CDS-P-fluviatile_contig8:1212619..1212691Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1212620..1212691 +
1622817215.7784884-CDS-P-fluviatile_contig8:1212956..12130491622817215.7784884-CDS-P-fluviatile_contig8:1212956..1213049Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1212957..1213049 +
1693571534.2012548-CDS-P-fluviatile_contig8:1212956..12130491693571534.2012548-CDS-P-fluviatile_contig8:1212956..1213049Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1212957..1213049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14418.1

>prot_P-fluviatile_contig8.14418.1 ID=prot_P-fluviatile_contig8.14418.1|Name=mRNA_P-fluviatile_contig8.14418.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=55bp
MTHAVETYLPGTVHLHCLWHVMKNACSDAWMEILRHVKGVGGKCEPYING
YLMK*
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mRNA from alignment at P-fluviatile_contig8:1212609..1213184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14418.1 ID=mRNA_P-fluviatile_contig8.14418.1|Name=mRNA_P-fluviatile_contig8.14418.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=576bp|location=Sequence derived from alignment at P-fluviatile_contig8:1212609..1213184+ (Porterinema fluviatile SAG_2381)
CGGACGGTGGTATGACACATGCAGTGGAAACATACCTGCCTGGCACCGTG
CACTTGCATTGTCTGTGGCACGTGATGAAGAATGTGAGGAAGAATTGCCA
AGGTCCTTTGGGACGCAAGACAAATCCTTCTTCAAGCTCCTCTACGCCGC
TGCGTTCTACTACAGAGGATGTGAGTAACCTTGTCCGCGGAAGGCGACCG
AGCAATGAGGCACACCCACCGCATTCCGTCTGTACGTGGGTCAAGTTCGA
TTGTTCCGCGCCGTCCTGGAGTGTACCTCCTCCCGCTTACCACGCTCTAC
CGGCCGTGTTTTACCACCCTCTGCCTGCCGTTTGGCCGTGTTTTGTAGGC
ATGCTCGGACGCGTGGATGGAAATTTTGCGCCACGTCAAGGGCGTCGGCG
GCAAGTGCGAACCGTACATCAATGGCTACCTGATGAAGTGAGTCAAAATG
TTGAAGTGGCCTTAAGCACGCGCCGTGTGACTGGCCGATAGGCTCCCTTG
CCTTTGTTGATATATCTTGCCCCTCATGGTTGCTTCGTCGAGCAGATTAT
GTCCTTGATGCTGATCGAACTTTGTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1212609..1213184+

>mRNA_P-fluviatile_contig8.14418.1 ID=mRNA_P-fluviatile_contig8.14418.1|Name=mRNA_P-fluviatile_contig8.14418.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=330bp|location=Sequence derived from alignment at P-fluviatile_contig8:1212609..1213184+ (Porterinema fluviatile SAG_2381)
ATGACACATGCAGTGGAAACATACCTGCCTGGCACCGTGCACTTGCATTG
TCTGTGGCACGTGATGAAGAATATGACACATGCAGTGGAAACATACCTGC
CTGGCACCGTGCACTTGCATTGTCTGTGGCACGTGATGAAGAATGCATGC
TCGGACGCGTGGATGGAAATTTTGCGCCACGTCAAGGGCGTCGGCGGCAA
GTGCGAACCGTACATCAATGGCTACCTGATGAAGTGAGCATGCTCGGACG
CGTGGATGGAAATTTTGCGCCACGTCAAGGGCGTCGGCGGCAAGTGCGAA
CCGTACATCAATGGCTACCTGATGAAGTGA
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