mRNA_P-fluviatile_contig8.14360.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig8.14360.1 vs. uniprot
Match: D8LG49_ECTSI (Succinate dehydrogenase assembly factor 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG49_ECTSI) HSP 1 Score: 142 bits (359), Expect = 6.620e-38 Identity = 79/116 (68.10%), Postives = 93/116 (80.17%), Query Frame = 3
Query: 228 MASRVTRSTVI-RLYKDILRHHQFALPRKHRELGDRYVRSEFKAHKEATGEQVSQFMQAWEDYLQQLRHQSGGVGRSLSEEDAADLSEEQREQLLRLKQQTLALSP--APGEAHGR 566
MAS V R++V+ RLYKDILR H+FALP KHRELGDRYVRSEFKAHKEATG+QV+QFM AW YL+QLR+Q G VGRSLS D + L++EQR+QL+RLKQQ + P A G A GR
Sbjct: 1 MASHVVRASVVKRLYKDILRQHRFALPPKHRELGDRYVRSEFKAHKEATGDQVAQFMHAWRSYLEQLRNQGGQVGRSLSAADVSHLNDEQRKQLVRLKQQASSSPPSSASGGAQGR 116
BLAST of mRNA_P-fluviatile_contig8.14360.1 vs. uniprot
Match: L1JE82_GUITC (Succinate dehydrogenase assembly factor 3 n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JE82_GUITC) HSP 1 Score: 83.2 bits (204), Expect = 7.290e-16 Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 3
Query: 228 MASRVTRSTVIRLYKDILRHHQFALPRKHRELGDRYVRSEFKAHKEATGEQVSQFMQAWEDYLQQLRHQ--SGGVGRSLSEEDAADLSEEQREQLLRLKQQ 524
MA +R+ +I LY+ ILR H+ LP + +ELGD YVRSEFK HK+A +V F + W++YL + Q SG GR+L EE+AA L++EQ+E L RL+++
Sbjct: 1 MAEAFSRTAMISLYRKILRLHKRVLPNEMKELGDSYVRSEFKQHKKAKVGEVKVFARQWKEYLYTIEAQAASGTFGRNLREEEAAHLNQEQKENLKRLEEE 101
BLAST of mRNA_P-fluviatile_contig8.14360.1 vs. uniprot
Match: A0A7S0W326_9CRYP (Succinate dehydrogenase assembly factor 3 n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W326_9CRYP) HSP 1 Score: 83.2 bits (204), Expect = 1.540e-15 Identity = 45/105 (42.86%), Postives = 71/105 (67.62%), Query Frame = 3
Query: 228 MASRVTRSTVIRLYKDILRHHQFALPRKHRELGDRYVRSEFKAHKEATGEQVSQFMQAWEDYLQQL--RHQSGGVGRSLSEEDAADLSEEQREQLLRLKQQTLAL 536
MAS ++++++ LY+ +LR H+ LP++ +ELGD+Y RSEFKAHK A QV QF+Q W++Y+ L + Q G GR L +S+EQREQL +L++++ +
Sbjct: 27 MASAFSKTSMLNLYRSVLRIHKRVLPQEMKELGDKYARSEFKAHKTAKIGQVKQFVQQWKEYVYTLDIQAQKGAFGRDLDSSKMDKMSDEQREQLKQLEEESRRI 131
BLAST of mRNA_P-fluviatile_contig8.14360.1 vs. uniprot
Match: A0A836CAZ4_9STRA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAZ4_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 2.930e-14 Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query: 228 MASRVTRSTVIRLYKDILRHHQFALPRKHRELGDRYVRSEFKAHKEATGEQVSQFMQAWEDYLQQLRHQSGGVGRSLSEEDAADLSEEQREQLLRLKQQT 527
M+S + ++LY+ IL H+ LP HR +GD+Y+++EFKAHK+A E V FM+ WE Y ++LR Q GR L ++ L+ EQ+++L L+ +T
Sbjct: 1 MSSPSSNRAALKLYRSILHLHRTVLPASHRAVGDKYIKAEFKAHKDAKPEHVPPFMRGWETYKERLRMQQSQFGRDLRTDEQQSLTAEQQQKLEELRSRT 100
BLAST of mRNA_P-fluviatile_contig8.14360.1 vs. uniprot
Match: A0A6T8KYE3_HEMAN (Succinate dehydrogenase assembly factor 3 n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8KYE3_HEMAN) HSP 1 Score: 79.0 bits (193), Expect = 5.620e-14 Identity = 42/105 (40.00%), Postives = 69/105 (65.71%), Query Frame = 3
Query: 228 MASRVTRSTVIRLYKDILRHHQFALPRKHRELGDRYVRSEFKAHKEATGEQVSQFMQAWEDYLQQL--RHQSGGVGRSLSEEDAADLSEEQREQLLRLKQQTLAL 536
MAS +++++ LY+ +LR H+ LP++ +ELGD Y RSEFKAHK A QV QF+Q W++Y+ L + Q G G+ L +++EQR+QL +L++++ +
Sbjct: 32 MASAFNKTSMLNLYRSVLRIHKRVLPQEMKELGDMYARSEFKAHKSAKISQVKQFVQQWKEYVYTLDIQAQKGAFGKDLDATKLEKMNDEQRDQLKQLEEESRRI 136
BLAST of mRNA_P-fluviatile_contig8.14360.1 vs. uniprot
Match: A0A7S3X4S6_9SPIT (Succinate dehydrogenase assembly factor 3 n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X4S6_9SPIT) HSP 1 Score: 75.9 bits (185), Expect = 3.050e-13 Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 3
Query: 255 VIRLYKDILRHHQFALPRKHRELGDRYVRSEFKAHKEATGEQVSQFMQAWEDYLQQLRHQSGG---VGRSLSEEDAADLSEEQREQL 506
+++LY+DI H+ +LP HR+LGD YVR EF+ H+ A E +S+F + W DYL QLR Q+ +GRSLSEE+ A LS+EQR L
Sbjct: 7 LLKLYRDIRVAHR-SLPAAHRKLGDAYVRQEFRQHRAAAPEFLSEFQRQWRDYLTQLRRQASRGDVLGRSLSEEEIAALSDEQRHSL 92
BLAST of mRNA_P-fluviatile_contig8.14360.1 vs. uniprot
Match: A0A1X6P4M6_PORUM (Succinate dehydrogenase assembly factor 3 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4M6_PORUM) HSP 1 Score: 76.6 bits (187), Expect = 4.180e-13 Identity = 49/105 (46.67%), Postives = 57/105 (54.29%), Query Frame = 3
Query: 246 RSTVIRLYKDILRHHQFALPRKHRELGDRYVRSEFKAHKEATGEQVSQFMQAWEDYLQQLRHQSGG-VGRSLSEEDAADLSEEQREQLLRLKQQTLALSPAPGEA 557
R V+ LY+ +LR H LP R LGDRYVR EFKAHKE Q FMQ W++Y L GG VGR L + LSEEQ +L L A SP G+A
Sbjct: 24 RRDVLGLYRSLLRIHAAVLPAAQRALGDRYVREEFKAHKEVEPAQADAFMQTWQEYWVHLARARGGPVGRDLDGGTSEALSEEQTAKLDELAAAARAASPRLGDA 128
BLAST of mRNA_P-fluviatile_contig8.14360.1 vs. uniprot
Match: A0A7S4MXT2_9EUKA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MXT2_9EUKA) HSP 1 Score: 73.9 bits (180), Expect = 1.360e-12 Identity = 42/98 (42.86%), Postives = 66/98 (67.35%), Query Frame = 3
Query: 228 MASRVTRS-TVIRLYKDILRHHQFALPRKHRELGDRYVRSEFKAHKEATGEQVSQFMQAWEDYLQQL-RHQSGGVGRSLSEEDAADLSEEQREQLLRL 515
MA+++ S + ++LY+ +LR H+ LP HRELGD YV++EF+ H++A + QF + W DYL+Q+ R VGR +S E+ LS+EQ+ QLL++
Sbjct: 4 MAAKLADSGSFVKLYRAVLRAHRTHLPAAHRELGDTYVKAEFRLHQDAKPAFLQQFERQWRDYLKQITRPNEEHVGRGMSAEEVEALSDEQKVQLLKI 101
BLAST of mRNA_P-fluviatile_contig8.14360.1 vs. uniprot
Match: A0A7R9U9F8_9STRA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9F8_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 4.170e-12 Identity = 41/94 (43.62%), Postives = 62/94 (65.96%), Query Frame = 3
Query: 249 STVIRLYKDILRHHQFALPRKHRELGDRYVRSEFKAHKEATGEQVSQFMQAWEDYLQQLRHQSGG-VGRSLSEEDAADLSEEQREQLLRLKQQT 527
S + LY+ IL+ H+ LP + R+LGDRYVR EF HK A + F + WE+YL+ L + GG VGR L+ + +++++EQR+QL +L+ QT
Sbjct: 5 SRAVLLYRQILKQHR-RLPSEMRQLGDRYVREEFGRHKNAEPRFLGPFYEQWEEYLKTLEQRQGGAVGRDLNLIEVSEMTDEQRQQLEKLRNQT 97
BLAST of mRNA_P-fluviatile_contig8.14360.1 vs. uniprot
Match: A0A7S2G7W5_9STRA (Succinate dehydrogenase assembly factor 3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7W5_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 5.540e-11 Identity = 42/98 (42.86%), Postives = 64/98 (65.31%), Query Frame = 3
Query: 249 STVIRLYKDILRHHQFALPRKHRELGDRYVRSEFKAHKEATGEQVSQFMQAWEDYLQQLRHQSG--GVGRSLSEEDAADLSEEQREQLLRLKQQTLAL 536
S + LY+ ILR H+ LP + RELGD+YVRSEF+ H+ A+ E + F WE YL+ L+ G GR L EE +A +++EQ++ LL+L ++T ++
Sbjct: 2 SRALSLYRSILRGHR-TLPAEMRELGDKYVRSEFRQHQAASPEFLETFFSEWEGYLETLQTSDSKTGFGRPLGEEISA-MTDEQKQMLLKLAEETRSM 97 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig8.14360.1 >prot_P-fluviatile_contig8.14360.1 ID=prot_P-fluviatile_contig8.14360.1|Name=mRNA_P-fluviatile_contig8.14360.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=114bp MASRVTRSTVIRLYKDILRHHQFALPRKHRELGDRYVRSEFKAHKEATGEback to top mRNA from alignment at P-fluviatile_contig8:723635..727755+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig8.14360.1 ID=mRNA_P-fluviatile_contig8.14360.1|Name=mRNA_P-fluviatile_contig8.14360.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4121bp|location=Sequence derived from alignment at P-fluviatile_contig8:723635..727755+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig8:723635..727755+ >mRNA_P-fluviatile_contig8.14360.1 ID=mRNA_P-fluviatile_contig8.14360.1|Name=mRNA_P-fluviatile_contig8.14360.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=684bp|location=Sequence derived from alignment at P-fluviatile_contig8:723635..727755+ (Porterinema fluviatile SAG_2381)back to top |