mRNA_P-fluviatile_contig8.14344.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14344.1
Unique NamemRNA_P-fluviatile_contig8.14344.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14344.1 vs. uniprot
Match: A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.410e-13
Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:  926 EGPGRDVPFEYADLLEAMTLPCSIQLFPRVERRSLVYVDGKEARSHRDKRYT 1081
            E PG DVPFE+ADL +A +LPC+IQLFPRV+RRS+V+VDGKE+RS+R K+YT
Sbjct:  229 EDPGEDVPFEFADLHQATSLPCNIQLFPRVDRRSIVFVDGKESRSYRGKKYT 280
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ55_9PHAE2.410e-1371.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:605850..607719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001610.1
Exons2
Model size1330
Cds size1059
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14344.1prot_P-fluviatile_contig8.14344.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 605850..607448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817215.1144898-CDS-P-fluviatile_contig8:605849..6062061622817215.1144898-CDS-P-fluviatile_contig8:605849..606206Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 605850..606206 -
1693571533.2094746-CDS-P-fluviatile_contig8:605849..6062061693571533.2094746-CDS-P-fluviatile_contig8:605849..606206Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 605850..606206 -
1622817215.1320736-CDS-P-fluviatile_contig8:606746..6074481622817215.1320736-CDS-P-fluviatile_contig8:606746..607448Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 606747..607448 -
1693571533.2190433-CDS-P-fluviatile_contig8:606746..6074481693571533.2190433-CDS-P-fluviatile_contig8:606746..607448Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 606747..607448 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817215.147837-UTR-P-fluviatile_contig8:607448..6077191622817215.147837-UTR-P-fluviatile_contig8:607448..607719Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 607449..607719 -
1693571533.2329311-UTR-P-fluviatile_contig8:607448..6077191693571533.2329311-UTR-P-fluviatile_contig8:607448..607719Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 607449..607719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14344.1

>prot_P-fluviatile_contig8.14344.1 ID=prot_P-fluviatile_contig8.14344.1|Name=mRNA_P-fluviatile_contig8.14344.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=353bp
MLRFKSGRRRKRRRPGTIATTAAAAAVCAFIVGRGPFAASTSISIDPGLG
SGPRRGQTRGAFVLAQQHSDGTSSWRRHGSSSVSSRGGWRWCEGSVKRHR
QHYPRPTCSALERDANSAAGAGAPSLGVTMAMRSLQQQEEQQQQQQQQQL
HGSVAVSDLRHGGHLDALEGRPRGVGWPEVLALRRRHRRPGHSSRKQDEG
LSRRDATRRRRRQLEKKPEGPGRDVPFEYADLLEAMTLPCSIQLFPRVER
RSLVYVDGKEARSHRDKRYTPATIDRREPTDTASPKAAATVVAAASAAAA
AGVQEALRRERIDVNCSGSLRAGGEMNPPPIAAAEAVVPAAAAAAIAVGV
VMA
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mRNA from alignment at P-fluviatile_contig8:605850..607719-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14344.1 ID=mRNA_P-fluviatile_contig8.14344.1|Name=mRNA_P-fluviatile_contig8.14344.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1870bp|location=Sequence derived from alignment at P-fluviatile_contig8:605850..607719- (Porterinema fluviatile SAG_2381)
GTTGTGTCCGGTTTGTCCGGTTCCACGCACTTAGGTGGGGAGGGTAGAGA
GAGGAGTGGGAGGACGTAAACGTTGTGGGCGCATTCTTTCATGATCCCTA
CACTTGGTGTTGCCGGCGCCAGTTTTCTCCCGCCGGCGCCTTCCTTGAAG
CGCCGAAGCCGGCCAGGTGCGGCGAGACTGTTAAAATCTCAGTTCGACCT
TACGTGGCGTGCCTGCCCTTGAACCTAGGAAGAAACAAGTCGTCTAGCGC
GAACAGGCGAGTTCCGGACCAATGTTAAGGTTCAAGAGCGGAAGAAGAAG
GAAGAGGAGAAGGCCAGGTACGATTGCTACCACGGCTGCCGCCGCGGCCG
TTTGTGCTTTCATCGTAGGGAGGGGACCTTTTGCCGCCAGCACTAGCATC
AGCATCGATCCTGGGTTGGGATCAGGACCACGACGGGGGCAGACTCGTGG
AGCGTTCGTGCTCGCACAGCAGCACAGCGATGGCACGTCGTCTTGGAGAC
GGCATGGCAGTAGTAGCGTCAGCAGCAGGGGTGGTTGGCGATGGTGTGAG
GGTTCGGTGAAGCGGCATCGGCAGCACTATCCCCGGCCGACCTGCTCTGC
ACTCGAGAGGGATGCAAACTCTGCTGCTGGTGCTGGTGCTCCTTCCCTCG
GGGTTACGATGGCGATGAGATCGCTGCAGCAGCAAGAGGAACAGCAGCAG
CAGCAGCAGCAGCAGCAGCTGCACGGCTCTGTTGCCGTCTCCGACCTGCG
GCATGGTGGCCACTTGGACGCGCTTGAGGGCCGCCCCCGCGGCGTCGGCT
GGCCGGAAGTTCTGGCGCTGCGGCGGAGACACCGGCGGCCGGGGCACAGC
AGCAGGAAGCAAGACGAGGGTCTGTCGCGGAGGGACGCCACCCGTAGGCG
GCGCAGGCAGCTGGAGAAGAAGCCGGAGGGTCCGGGCCGGGATGTGCCCT
TCGAGTATGCAGATTTGCTCGAGGTGTGAAGATCGAAATGCGGCCGCGTT
TAACCAAGGACAGGATTAACTAGAGAAGCGTCGTTGTCGTCGTTGTGCCT
CATTGTTTCGGCTCTCCCGAGAAACGGTTCAAGGGAGAAAGAGTGAGAGT
GAGAGAGATAAAGAGAGTTCGGGGCACAGAGCAAATGGAGTCGTTCTCGT
AACCTCGGCCTTGCCCCCCCGGAGAAGCGCAGCGGACGGAGGGTCTAAAA
TGTTTACAATCATTTTCGTGTCGCGGGTGTTGTGTCGATCGTTGTCTCAT
ATTTGCAGCGCAGGAACGATTCCAATCAATCGCCTTTTAGCCACGCTCCA
GCAGCAGCAGGCCGCGTTCGTTGCTCCACTGTAGCTCGGTCGTGCGTTGG
CCGGCCGGCTCTCCTTTCGCCTGCCCGTTCATTTTCCAAACGGTGAACAC
ATAGCCATACCCTAACGCGAGAGAAAGGGAGTGGCCTCGTCGCCTTCTTA
TTCCCATGAAGCACACTCGACACTCTCCTGCCCGCCATCTACCACCCTCC
CTCGCCGCGGCAGGCGATGACTCTCCCCTGCAGCATCCAGCTCTTCCCGC
GCGTCGAGCGGAGGTCCCTCGTGTACGTGGACGGCAAGGAGGCGCGCTCG
CACCGGGATAAAAGGTACACCCCTGCCACCATCGACCGTCGGGAACCTAC
TGATACGGCTTCACCAAAGGCGGCAGCGACGGTGGTGGCGGCGGCTTCCG
CTGCTGCAGCTGCAGGGGTCCAGGAAGCGCTTCGACGAGAGAGGATTGAT
GTTAACTGCAGCGGCAGTCTTCGCGCAGGCGGAGAGATGAACCCGCCCCC
GATAGCAGCGGCAGAAGCGGTGGTACCAGCAGCAGCGGCAGCGGCGATAG
CGGTGGGGGTTGTAATGGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:605850..607719-

>mRNA_P-fluviatile_contig8.14344.1 ID=mRNA_P-fluviatile_contig8.14344.1|Name=mRNA_P-fluviatile_contig8.14344.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2118bp|location=Sequence derived from alignment at P-fluviatile_contig8:605850..607719- (Porterinema fluviatile SAG_2381)
ATGTTAAGGTTCAAGAGCGGAAGAAGAAGGAAGAGGAGAAGGCCAGGTAC
GATTGCTACCACGGCTGCCGCCGCGGCCGTTTGTGCTTTCATCGTAGGGA
GGGGACCTTTTGCCGCCAGCACTAGCATCAGCATCGATCCTGGGTTGGGA
TCAGGACCACGACGGGGGCAGACTCGTGGAGCGTTCGTGCTCGCACAGCA
GCACAGCGATGGCACGTCGTCTTGGAGACGGCATGGCAGTAGTAGCGTCA
GCAGCAGGGGTGGTTGGCGATGGTGTGAGGGTTCGGTGAAGCGGCATCGG
CAGCACTATCCCCGGCCGACCTGCTCTGCACTCGAGAGGGATGCAAACTC
TGCTGCTGGTGCTGGTGCTCCTTCCCTCGGGGTTACGATGGCGATGAGAT
CGCTGCAGCAGCAAGAGGAACAGCAGCAGCAGCAGCAGCAGCAGCAGCTG
CACGGCTCTGTTGCCGTCTCCGACCTGCGGCATGGTGGCCACTTGGACGC
GCTTGAGGGCCGCCCCCGCGGCGTCGGCTGGCCGGAAGTTCTGGCGCTGC
GGCGGAGACACCGGCGGCCGGGGCACAGCAGCAGGAAGCAAGACGAGGGT
CTGTCGCGGAGGGACGCCACCCGTAGGCGGCGCAGGCAGCTGGAGAAGAA
GCCGGAGGGTCCGGGCCGGGATGTGCCCTTCGAGTATGCAGATTTGCTCG
AGATGTTAAGGTTCAAGAGCGGAAGAAGAAGGAAGAGGAGAAGGCCAGGT
ACGATTGCTACCACGGCTGCCGCCGCGGCCGTTTGTGCTTTCATCGTAGG
GAGGGGACCTTTTGCCGCCAGCACTAGCATCAGCATCGATCCTGGGTTGG
GATCAGGACCACGACGGGGGCAGACTCGTGGAGCGTTCGTGCTCGCACAG
CAGCACAGCGATGGCACGTCGTCTTGGAGACGGCATGGCAGTAGTAGCGT
CAGCAGCAGGGGTGGTTGGCGATGGTGTGAGGGTTCGGTGAAGCGGCATC
GGCAGCACTATCCCCGGCCGACCTGCTCTGCACTCGAGAGGGATGCAAAC
TCTGCTGCTGGTGCTGGTGCTCCTTCCCTCGGGGTTACGATGGCGATGAG
ATCGCTGCAGCAGCAAGAGGAACAGCAGCAGCAGCAGCAGCAGCAGCAGC
TGCACGGCTCTGTTGCCGTCTCCGACCTGCGGCATGGTGGCCACTTGGAC
GCGCTTGAGGGCCGCCCCCGCGGCGTCGGCTGGCCGGAAGTTCTGGCGCT
GCGGCGGAGACACCGGCGGCCGGGGCACAGCAGCAGGAAGCAAGACGAGG
GTCTGTCGCGGAGGGACGCCACCCGTAGGCGGCGCAGGCAGCTGGAGAAG
AAGCCGGAGGGTCCGGGCCGGGATGTGCCCTTCGAGTATGCAGATTTGCT
CGAGGCGATGACTCTCCCCTGCAGCATCCAGCTCTTCCCGCGCGTCGAGC
GGAGGTCCCTCGTGTACGTGGACGGCAAGGAGGCGCGCTCGCACCGGGAT
AAAAGGTACACCCCTGCCACCATCGACCGTCGGGAACCTACTGATACGGC
TTCACCAAAGGCGGCAGCGACGGTGGTGGCGGCGGCTTCCGCTGCTGCAG
CTGCAGGGGTCCAGGAAGCGCTTCGACGAGAGAGGATTGATGTTAACTGC
AGCGGCAGTCTTCGCGCAGGCGGAGAGATGAACCCGCCCCCGATAGCAGC
GGCAGAAGCGGTGGTACCAGCAGCAGCGGCAGCGGCGATAGCGGTGGGGG
TTGTAATGGCGGCGATGACTCTCCCCTGCAGCATCCAGCTCTTCCCGCGC
GTCGAGCGGAGGTCCCTCGTGTACGTGGACGGCAAGGAGGCGCGCTCGCA
CCGGGATAAAAGGTACACCCCTGCCACCATCGACCGTCGGGAACCTACTG
ATACGGCTTCACCAAAGGCGGCAGCGACGGTGGTGGCGGCGGCTTCCGCT
GCTGCAGCTGCAGGGGTCCAGGAAGCGCTTCGACGAGAGAGGATTGATGT
TAACTGCAGCGGCAGTCTTCGCGCAGGCGGAGAGATGAACCCGCCCCCGA
TAGCAGCGGCAGAAGCGGTGGTACCAGCAGCAGCGGCAGCGGCGATAGCG
GTGGGGGTTGTAATGGCG
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