mRNA_P-fluviatile_contig8.14339.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14339.1
Unique NamemRNA_P-fluviatile_contig8.14339.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14339.1 vs. uniprot
Match: D8LG66_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG66_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 2.720e-101
Identity = 157/190 (82.63%), Postives = 173/190 (91.05%), Query Frame = 2 
Query:  224 GALRRSTRFSAQSDSMYPDGVPRLPGIKTIVETEEEEGQRAVREWQDDGRKGRVLVRRKEVPSPEMDPASVCQLVFQSLQNNDDPMLDYGAAVAIKFASSKSAVKSMTPAEYGTFLRNDPELVLLVDNASCAPAERAKVSPDGRQILQKVEVVGRYPDNVRRIVDVQLSKE-DECWRVDAMTLRPVAEQR 790
            G  RRS+R  A+++ +YPDGVP LPGIKTIVETEEEE QRAVREWQDDGRKGRVLVRRKE+PSP MDPASVCQLVF+SLQNNDDPMLDYGAAVA+KFASSKSAV++MTPAEYG FLRNDP+ VLLVDNASCAPAERAKVS DG+Q+LQKVEVVGRYPD VRRIV+VQL+KE D+CWRVDAMT  P  EQR
Sbjct:   71 GHSRRSSRLLAETNGIYPDGVPNLPGIKTIVETEEEEEQRAVREWQDDGRKGRVLVRRKEIPSPAMDPASVCQLVFESLQNNDDPMLDYGAAVAVKFASSKSAVRNMTPAEYGAFLRNDPDQVLLVDNASCAPAERAKVSADGKQVLQKVEVVGRYPDVVRRIVEVQLTKEEDDCWRVDAMTFGPNVEQR 260
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG66_ECTSI2.720e-10182.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:570373..575098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.8
Seed ortholog evalue4.6e-84
Seed eggNOG ortholog2880.D8LG66
EggNOG OGs2E7RE@1,2SEA9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001780.1
Exons6
Model size1636
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14339.1prot_P-fluviatile_contig8.14339.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 570416..574258 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817223.5267534-UTR-P-fluviatile_contig8:570372..5704151622817223.5267534-UTR-P-fluviatile_contig8:570372..570415Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 570373..570415 +
1693571570.070892-UTR-P-fluviatile_contig8:570372..5704151693571570.070892-UTR-P-fluviatile_contig8:570372..570415Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 570373..570415 +
1622817223.6112812-UTR-P-fluviatile_contig8:574258..5750981622817223.6112812-UTR-P-fluviatile_contig8:574258..575098Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 574259..575098 +
1693571570.3985567-UTR-P-fluviatile_contig8:574258..5750981693571570.3985567-UTR-P-fluviatile_contig8:574258..575098Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 574259..575098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817223.5378125-CDS-P-fluviatile_contig8:570415..5706091622817223.5378125-CDS-P-fluviatile_contig8:570415..570609Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 570416..570609 +
1693571570.081466-CDS-P-fluviatile_contig8:570415..5706091693571570.081466-CDS-P-fluviatile_contig8:570415..570609Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 570416..570609 +
1622817223.549545-CDS-P-fluviatile_contig8:571131..5712011622817223.549545-CDS-P-fluviatile_contig8:571131..571201Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 571132..571201 +
1693571570.3318622-CDS-P-fluviatile_contig8:571131..5712011693571570.3318622-CDS-P-fluviatile_contig8:571131..571201Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 571132..571201 +
1622817223.5635333-CDS-P-fluviatile_contig8:572594..5726851622817223.5635333-CDS-P-fluviatile_contig8:572594..572685Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 572595..572685 +
1693571570.355444-CDS-P-fluviatile_contig8:572594..5726851693571570.355444-CDS-P-fluviatile_contig8:572594..572685Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 572595..572685 +
1622817223.5752459-CDS-P-fluviatile_contig8:573154..5732191622817223.5752459-CDS-P-fluviatile_contig8:573154..573219Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 573155..573219 +
1693571570.3696256-CDS-P-fluviatile_contig8:573154..5732191693571570.3696256-CDS-P-fluviatile_contig8:573154..573219Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 573155..573219 +
1622817223.5854082-CDS-P-fluviatile_contig8:573473..5736471622817223.5854082-CDS-P-fluviatile_contig8:573473..573647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 573474..573647 +
1693571570.3795507-CDS-P-fluviatile_contig8:573473..5736471693571570.3795507-CDS-P-fluviatile_contig8:573473..573647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 573474..573647 +
1622817223.5966287-CDS-P-fluviatile_contig8:574099..5742581622817223.5966287-CDS-P-fluviatile_contig8:574099..574258Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 574100..574258 +
1693571570.3887317-CDS-P-fluviatile_contig8:574099..5742581693571570.3887317-CDS-P-fluviatile_contig8:574099..574258Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 574100..574258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14339.1

>prot_P-fluviatile_contig8.14339.1 ID=prot_P-fluviatile_contig8.14339.1|Name=mRNA_P-fluviatile_contig8.14339.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=251bp
MRILYIDCAYAAAVAAAAMVQSAAAFTLIAPPSTSRRSALLSMFTPAAAA
PVASTTSCMPGALRRSTRFSAQSDSMYPDGVPRLPGIKTIVETEEEEGQR
AVREWQDDGRKGRVLVRRKEVPSPEMDPASVCQLVFQSLQNNDDPMLDYG
AAVAIKFASSKSAVKSMTPAEYGTFLRNDPELVLLVDNASCAPAERAKVS
PDGRQILQKVEVVGRYPDNVRRIVDVQLSKEDECWRVDAMTLRPVAEQRT
*
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mRNA from alignment at P-fluviatile_contig8:570373..575098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14339.1 ID=mRNA_P-fluviatile_contig8.14339.1|Name=mRNA_P-fluviatile_contig8.14339.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4726bp|location=Sequence derived from alignment at P-fluviatile_contig8:570373..575098+ (Porterinema fluviatile SAG_2381)
CTCCACCTGCTCTCTCACGCGCGTGGTAGGAGACGACAGCACCATGCGGA
TACTCTACATCGATTGCGCTTATGCTGCTGCCGTTGCCGCTGCTGCCATG
GTCCAATCTGCAGCAGCTTTCACACTCATTGCACCACCGTCTACTTCGCG
GAGATCCGCTCTGCTGAGCATGTTCACCCCTGCTGCTGCCGCTCCTGTCG
CGTCCACCACTTCCTGCATGCCGGGAGCTCTCCGCCGGTGGGCCCAATAC
TCGATGATCGTGTGTCATAATATGCGTGATGTTATCATGTGTGATTTCGA
TCGCTTGAGACAAACTTAAGATGTGGACACTCGGTGTGCGCTCGCCCTTC
TGTGTGGTCGGTGTGTGCATGTGCGCAAGCACGCGTCAACGTTTCAACTG
TCTCCTTGGGTTTGGGGTGTCGGTGAACAGGAGAGAATGCACGACTTTAA
CGCATCACGCACACCACTCTCTCGTGTGGCGGGATCGAGGGCGAGATAAG
GCGGAAGAGTGGTAAAAACCTTGGTATGATGTGTTGGGAACGGCAACCAT
CAAGCAGCCCCATGTTCTTGGTGCCTCCCGCTCGCGTGGATCCCTCTCCC
CCACGCTGCCCTCGTGCGCCACGGATCGCTCACCACGAAACAAACAGTTT
CAGGCATGCATGATCTGTCACCTTTGAAATGTGAAGCATTTTTTCGCGCG
CCGACCTCCTGTTGTGCGTCGTTCACCGCCGACCTCCCTCGCATTCTACG
ATCACATAGGAGCACGAGGTTCTCAGCCCAATCGGACAGCATGTATCCCG
ACGGAGTACCCAGACTGCCCGGAATAAAGGTAGGTGTCACTGGGCGACGA
GAGATAATACTCTGGAGTTATCTGTTTCGGAGAGGTAGTGCGCTTGTGAG
GAGCCACGAGAACTTCCAAACTGTCGACGTGATTCCGATCCATCTACCCT
CCTTCACTCTTTAGCTCTCCGTCTTTTGTTCTCTTTGACAAGCTTGAGTG
TTAGCCCCGAGCTTGAAATGGCGGCACGGCACGGAATAGATCAGCCTGAT
GAACACGCTTAAGAAGGGAAGCGCCACCGTGGTTTCCTGCCTCCGTTGTT
GCTGTCGCCTCCGTTCTGTTGCTGCAACAAGTGAAGCTTTCCCTGTTCCC
TGCACCGCCGCGCCGCGGAACACGCTCCGAACCCCCCTCCTACGGACGTG
TGTGTGTGTGTGTGTGTGTGTGTTTTCATCCCATTAGTTGGCGACTGTTG
ACCCTGGGGTACAACAACAGTGCTACACGTATTCGGTGTATGTAGTGACT
ACACTTGTTCAGTGTATTTTTGTCGTACACTACAACCAACCGGGGTCACA
CAGGAGGGGGTAAACACCGGGGCTTTTTTTTTCTTTTTTTTTTTTTTTTT
TTTTTTTTTCTTTTTGTGCCCCACCTTCCTCCTGCGGTTCGTGCCTGCAT
TTTTATCGCGAGAAGGTTTCGGCTGTCCCTTTCCCTCGTCAACGGTGAAG
TCGAATTTTGTTTACTCACGAGCTTTTAAGCTTTTGTCGCTTTCCACTCC
AAAGTCACAAAAGTCTCACCCTACTGGGATTCGAACTCACGACCTTGGCA
CTAGCGGGTTTTCGAGGATACCCACTAGCCCACCGGGGCGACCGGCTAGG
ACGTGTAAGTTGGTAAATTTGTCAGCAGACTCTTCCTTGCATGCCTGCAC
ATGAGTCAACATCCTTTTCCATGAACGCCCCACCGTGAACATGCCCCGTC
TCTCCTCACGCAACAGCAGACGAAAAGCATCCGAAACACGGCTTGCCGGG
TTTGTCCTTTTTCTTCCTGTTTTCCCTCTTGGCTTGACGCCAACAAGATA
GTTCATACCAGTCACCACAAGGATCTGTGCGGATTGATTTTCGGACACAA
GTTTGTTCCAAAGTCGGAAATCGGCTCCAGGAGGGGGGAGTCGGGGCATA
CTTGACCCCATATATTTCAAGTTGGGGGTACACATAACGGATACGATGGC
AGAGGAGGGGCACACCGCCAACTGCCGTCAACAGAATTCCCGACTGCTAG
TTCCGTTACATTTAGAGATTTGACCAGCGTCAATATTGGGGGGTTGCTCC
GCACAGACCCTTGATCACTACTTCGTTTGCCGTTTTTTTACTTTTTTTTC
TCCGTCCGCGTCCGCTTTCACGCGCGTATACTCTCGTCCATGTTTGCCTG
CCGGGTCCGAAAAAAACAACAGACTATTGTGGAAACGGAGGAGGAGGAGG
GACAGAGAGCCGTTCGCGAGTGGCAGGACGACGGAAGGAAGGGGAGGGTG
CTCGTCAGAAGAAGTGAGGGCATTGACAAAGCACGCAGGGAGAATAGGTC
AGGGCGGAAGCTTCGTATAATCGCGGTTTTGTTTCGCGATATTGGTGAGA
CTCCTGTTCTAGGCACACTTTTTAGGTTCAGTTTGGCACCTGCTCGAAGT
TGATGGGGGAGGGGAGGGTGGGGGGTGGGGGGTGGAGGTTGTAATGCATC
CAGGTGGACCGAAGGCATGGAGTGGTCGAGTGTGAGCAGAACAGACGTCT
TGAGTTTCGCTTTCCAGGCCACATTGCGCTCTACTTCCAAAAAGACGGTG
CTTCGCGTTTTTCTTTTTTTATCTTCTTGGCTGTGCGACGGATGAAGGAT
ATCATGAGAATGGAGAGGCTCGCCGAATTCCCGTACACCACAAGCCATGC
ACGATAACGCTTACCCCCTCTGCCCCCGCCTTCGCCCCCCTTCCTACTCG
TCCTCGTCTCCACGCCCCGCTACCACTCGCAGAGGAGGTCCCATCGCCGG
AGATGGATCCGGCTTCCGTGTGCCAGCTAGTGTTCCAGTCGCTGCAGGTA
GGGGGCATGGGGGCGACACGACTAAACGGGTCTTGACCATTCCTGGAAAC
GAGTGTACGAAGCTCTAGACTGTGACATGTGGGTGCTGGTGAAGCCGCTC
GTGGAAAGTGAACGGTATGACTACCGTCGACACGATTATGGACTGCTCCC
TCCCCCCCGCACGCATAGATTTGAGGTCAAAGGCCTCACGACTATGGCAT
ACATGACTGTGAGCCTCCCCCTCCTCCACGGCTTTGGCGCGTTTTGATCA
GAACAACGACGACCCGATGCTGGACTACGGCGCAGCCGTGGCGATCAAGT
TCGCTTCGTCCAAGAGCGCCGTCAAGAGCATGACTCCCGCGGAGTACGGA
ACCTTTCTGAGGAACGATCCCGAGCTCGTGCTCCTCGTCGACAACGCCTC
CTGCGCCCCGGCCGAACGGGCGAAGGTGAGAGCTGGCTTGACTTAACCGA
GCAAGCTGCGGCGGCGGGCGTCTCACATGCGTGTGGCTTGTCGTCGTCGG
CATTTCGTTGACTTTGTCTGACATCGGGCAAGAACAATAAAATGGGTGGC
TGCTTGAGTGCCCTGCTGTCAAGTCTCGTAACCCCCCGTCGATACCTTCT
TTTACTTTCCTTTTTCCGGAGTTTCTTCCATTGATGGGATTTCCTACCTT
CGCGTGGTTCCTGCTTGCGTTTTTCTCCGCCAGCTTTCAACATGATTAAG
TCGAAGCGTTTCAATTAATGTCGCAAGAGTGCTCACCGGATCTGCTCCGA
GCTAGTCCCGCGTTCAGCGTTTTCACCGTGTGCCATCTGTCGACAAGGAA
CGTTGTTTTGTTGACCTCGTCTGAATTGAACCTTGTACTGCGTTCATCGA
TGCACCCGACCCAAAATGGCTGTCCAGGTGTCCCCCGACGGCAGACAAAT
CCTTCAAAAAGTGGAGGTGGTGGGGAGATACCCCGACAACGTGAGGAGAA
TAGTGGACGTGCAGCTCAGCAAGGAGGATGAGTGCTGGAGAGTGGACGCC
ATGACTCTCCGGCCGGTCGCCGAGCAAAGAACATAAATGCTCTAAAGTCG
TCCTTGCGTCGAAATTCGGCAGTGCATCAGCAGTGGAAGACAAAGCGATC
ATCCGGTTCTTGCGCAGAGCGTTCGTGGTACCTGGCGGGTGAAAATCTGC
GATAGATCACCTGTAGTTCACGGAATATACGGCGAGGTGTGTGTGTTCAA
CGTTACCGTAATGCACGACCGGTAGGAACGTCAGCATCTCGCAGTTGCTC
GCACTCTGCTGTGGCATGGCCGTCGGAGATCATGGCGGCATTCGCCAGCG
ACTCTCCGAAGAGCAGGAAAAGAGTGCCGAGTGTGCTCATGTACTACGTG
ATAAACTACAGTACCAGATTGCATTTCCAAGCCGCTCGCCTCCGCATTAT
CTGTGGGTACCGTTTCCGGCCGATGCGTCTTTGCGAGGTATCGATGGAAT
GGCTTCGGTTGCCGCCGCTTCGTGCGTTTCGGCGCCATCCCTAGCTGTGA
AGATACAAACGTAGAAAATCGCTCAGGGGCGCTCAGCATCAAGTGTGGCG
AATAAATAGTCGTGACTACGGTAGTCGAGGGGGGGCTTGGAGCTGTGACG
AGGGCCCAGGGATGGGACGAAACTTGAGGAATAGTAAGGAGTTGAGGTAC
ACCTCTTGGTTGAATCCCAAGCTCAATTGGGCAGGCGTCATTGGAAAATG
GGTCTTAAGTCGAGATAAGCACGATCTCCGCGCCCTTGTGGTTGCAATTC
CCGCCTTCCAGTGTACGGTCGGGTTGCACGAGTGCCACGGAAGGATTTCG
TTTGTTTTAGACCCCGACCATCTGCCTGATGAGGCTTCATTATGTGGGTT
ATTGCTTTTCGAATAAGTAAAATCGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:570373..575098+

>mRNA_P-fluviatile_contig8.14339.1 ID=mRNA_P-fluviatile_contig8.14339.1|Name=mRNA_P-fluviatile_contig8.14339.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1506bp|location=Sequence derived from alignment at P-fluviatile_contig8:570373..575098+ (Porterinema fluviatile SAG_2381)
ATGCGGATACTCTACATCGATTGCGCTTATGCTGCTGCCGTTGCCGCTGC
TGCCATGGTCCAATCTGCAGCAGCTTTCACACTCATTGCACCACCGTCTA
CTTCGCGGAGATCCGCTCTGCTGAGCATGTTCACCCCTGCTGCTGCCGCT
CCTGTCGCGTCCACCACTTCCTGCATGCCGGGAGCTCTCCGCCGATGCGG
ATACTCTACATCGATTGCGCTTATGCTGCTGCCGTTGCCGCTGCTGCCAT
GGTCCAATCTGCAGCAGCTTTCACACTCATTGCACCACCGTCTACTTCGC
GGAGATCCGCTCTGCTGAGCATGTTCACCCCTGCTGCTGCCGCTCCTGTC
GCGTCCACCACTTCCTGCATGCCGGGAGCTCTCCGCCGGAGCACGAGGTT
CTCAGCCCAATCGGACAGCATGTATCCCGACGGAGTACCCAGACTGCCCG
GAATAAAGGAGCACGAGGTTCTCAGCCCAATCGGACAGCATGTATCCCGA
CGGAGTACCCAGACTGCCCGGAATAAAGACTATTGTGGAAACGGAGGAGG
AGGAGGGACAGAGAGCCGTTCGCGAGTGGCAGGACGACGGAAGGAAGGGG
AGGGTGCTCGTCAGAAGAAACTATTGTGGAAACGGAGGAGGAGGAGGGAC
AGAGAGCCGTTCGCGAGTGGCAGGACGACGGAAGGAAGGGGAGGGTGCTC
GTCAGAAGAAAGGAGGTCCCATCGCCGGAGATGGATCCGGCTTCCGTGTG
CCAGCTAGTGTTCCAGTCGCTGCAGAGGAGGTCCCATCGCCGGAGATGGA
TCCGGCTTCCGTGTGCCAGCTAGTGTTCCAGTCGCTGCAGAACAACGACG
ACCCGATGCTGGACTACGGCGCAGCCGTGGCGATCAAGTTCGCTTCGTCC
AAGAGCGCCGTCAAGAGCATGACTCCCGCGGAGTACGGAACCTTTCTGAG
GAACGATCCCGAGCTCGTGCTCCTCGTCGACAACGCCTCCTGCGCCCCGG
CCGAACGGGCGAAGAACAACGACGACCCGATGCTGGACTACGGCGCAGCC
GTGGCGATCAAGTTCGCTTCGTCCAAGAGCGCCGTCAAGAGCATGACTCC
CGCGGAGTACGGAACCTTTCTGAGGAACGATCCCGAGCTCGTGCTCCTCG
TCGACAACGCCTCCTGCGCCCCGGCCGAACGGGCGAAGGTGTCCCCCGAC
GGCAGACAAATCCTTCAAAAAGTGGAGGTGGTGGGGAGATACCCCGACAA
CGTGAGGAGAATAGTGGACGTGCAGCTCAGCAAGGAGGATGAGTGCTGGA
GAGTGGACGCCATGACTCTCCGGCCGGTCGCCGAGCAAAGAACATAAGTG
TCCCCCGACGGCAGACAAATCCTTCAAAAAGTGGAGGTGGTGGGGAGATA
CCCCGACAACGTGAGGAGAATAGTGGACGTGCAGCTCAGCAAGGAGGATG
AGTGCTGGAGAGTGGACGCCATGACTCTCCGGCCGGTCGCCGAGCAAAGA
ACATAA
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