mRNA_P-fluviatile_contig8.14324.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14324.1
Unique NamemRNA_P-fluviatile_contig8.14324.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig8.14324.1 vs. uniprot
Match: A0A6H5K4Q5_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Q5_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.760e-7
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 3 
Query: 1479 SRATHGNDIDLSVQHPGEMMFVPVFWMRAVLNLDDATAIVQKFVRTYN 1622
            +RA + +++ L VQHPGE MFVP FWM AVLNLDD TA+ Q  V ++N
Sbjct:  227 ARARYADEVTLYVQHPGETMFVPGFWMHAVLNLDDTTAVTQNIVTSHN 274
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4Q5_9PHAE3.760e-758.33JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:465460..469872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2033
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14324.1prot_P-fluviatile_contig8.14324.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 469234..469566 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817222.447739-UTR-P-fluviatile_contig8:465459..4660501622817222.447739-UTR-P-fluviatile_contig8:465459..466050Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 465460..466050 +
1693571568.5649714-UTR-P-fluviatile_contig8:465459..4660501693571568.5649714-UTR-P-fluviatile_contig8:465459..466050Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 465460..466050 +
1622817222.4657714-UTR-P-fluviatile_contig8:468430..4692331622817222.4657714-UTR-P-fluviatile_contig8:468430..469233Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 468431..469233 +
1693571568.5762763-UTR-P-fluviatile_contig8:468430..4692331693571568.5762763-UTR-P-fluviatile_contig8:468430..469233Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 468431..469233 +
1622817222.4918277-UTR-P-fluviatile_contig8:469566..4698721622817222.4918277-UTR-P-fluviatile_contig8:469566..469872Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 469567..469872 +
1693571568.5998657-UTR-P-fluviatile_contig8:469566..4698721693571568.5998657-UTR-P-fluviatile_contig8:469566..469872Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 469567..469872 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817222.4799333-CDS-P-fluviatile_contig8:469233..4695661622817222.4799333-CDS-P-fluviatile_contig8:469233..469566Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 469234..469566 +
1693571568.586772-CDS-P-fluviatile_contig8:469233..4695661693571568.586772-CDS-P-fluviatile_contig8:469233..469566Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 469234..469566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14324.1

>prot_P-fluviatile_contig8.14324.1 ID=prot_P-fluviatile_contig8.14324.1|Name=mRNA_P-fluviatile_contig8.14324.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
MPMQSDRLQQLMIIGCACAGSRAGAGGSSRATHGNDIDLSVQHPGEMMFV
PVFWMRAVLNLDDATAIVQKFVRTYNLAEVRKSISAMFHGLHRITPNKLG
EGEAVLSTVV*
back to top

mRNA from alignment at P-fluviatile_contig8:465460..469872+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14324.1 ID=mRNA_P-fluviatile_contig8.14324.1|Name=mRNA_P-fluviatile_contig8.14324.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4413bp|location=Sequence derived from alignment at P-fluviatile_contig8:465460..469872+ (Porterinema fluviatile SAG_2381)
GGGGTCCGGGTTGAAAAGGCTTGTGCTTGGCGGGGCGTCCGTGTGAGCAG
TATGGTGTTGTTTGTGTCTCCTCGTGTCTCGTGCTGTCGTAGAAAGATAT
GGATAGGGGCTTCGGAGACAACAGTTTCACAGCGGGAGGGGGTGCCTCAA
ATTCTAGGACCCCTCGCCATTGATCAACCCTCTCATGAAGGATGCAAAAC
GGGCCAAGTGACCATCGCTCGAGACAAGGGTTGCGGGATTTCGAGATCTT
CATGCGTGTCATGCAAATTCTGGCTGTTTTGGAAGAGCCATCGGAAGCCC
ACAGCTGGCCCGATCTCTGGATAGAGGTACCGTGTGGTATCTGTTCTCCC
ACCTGCGAGAGGAGATAAGAGAGAAAGAGAGAGCGAAAGAGAAAAAGAGA
AGTCGTGGGCATCTCTATGTCGTGCTGTTTGTTCAGGATGGAAACCGTTA
CCGCCAGATTGCGGAGGGCGAACAATGTCGCGGAGAGCGAACAATTTCGC
CGAGGAAAGGAGCCAGCGGGAGACGGCCAGCTCGAGATCGCGGGGGTCAT
CAGCGTGATGCGAGGTCGAGAACCGCAACTTGTCTACAAAGGTGAGAGAG
AGGAGGGGGTGTGCTGTGTGGGCTGTGGTCGGAAGGATAGACCGGCTAGC
AGTAACGCTGCGCCAGCCAAGCAGCACACGGCGTACACTGCGTTTGACCA
TCTCGAGGAACGAGAGATGAGATAGCCGTGAGGAGGGAGGGGAGCCATTT
TTTTTTTCACTGAGCTGTGGGCTCAGACTAGGGGGAAACAAACGATGTTG
TGCCGTGAGACATGGGTTGCACTCCTTCGCAACAGCAGCGCTTTCGTGGT
GGGTCCATCATGCAGCAGCAAATAAATTCAGCTTGCCAAAGCGCCGAACA
AAAATTGAACAATCACATCGATCGCCAAAAAACAACGAAAGGAAGAGAGA
CTCAGAGCCGCTCGATCAGTCCAAAGTCTCAGTACCTTCCGCCCCTTGTA
CAGGCCTCTCTTCCTTCAACTTGGTACCCCTCGCATTCTCTTACTCCCCA
CTAGGTGCCAGGTAGAGGGTGCCCTCCCGCTGGCTGTCCGACTTCAATCA
CCACACAGGCCGTGGTAACGTTTGAAAGTTGCAAACATAGAGTCTGGCAG
ACAGCAGTCTCCTTCACTCTCGCTGCTGCAGTTCTTGTCTCGTGTTGTTG
ATGCGCTGGTCCCCTGTTTCGCCGCCTGCAGTATCTCTCGTATCTCCAGT
GACGTCCGGAGAGTACAAGAGCTCACTGTTACTCTCGGCTGCGCATTCAG
GCAACAATCAAGTTTTCTCTTTTGAGTGTAGGTGGTGTTTTCGATGGCTA
CTTTACAGCTCGCGAGTTCCCCCGGTGTGTCGCCGCTTGGCGTGTCTCCA
CAGCACCACATCATCCTGTTGTGAGCTTCTCTCGCTGTGGGCTAGCCGGC
AGTCACACGGGTGACGTGATGCCAGCGAGAGGGCTGAGAGAAAAGTCCAG
TTGTGCGCGAGAGACGGGGAAAGGAGAGTCGGTGAAACCAGTCTGGCGAT
GTGAACAGAATAAGGCCACACCCCCGAAACGAAACACACGTCATCGCCAG
CGCGCGAGCTACACACTCGCGTACACGATGACACACGAAAAAAAACGGGG
CCAAACGGTGAAATCGTCACTGCAGAGATTTAGGATTGCCACAGCTTGCT
CCGCAGGCTCTCGTCGCCGTGGTCGGTGGTCGGCTGATCTGCTTGATGGG
GACGGACGTGCTGGGTGTGTGGTGTAACAACCAACTTGAACCTTGAACCA
GCGGGGTTCGGTTCGGGTCTGTTTAGATCTGGTTTAGATTCCCCGCCTCT
CCAGAAATTTGGCTTTTCGTTGCTCTCAGCCTCGCTCCTTGTCTCCTCTT
TCTGCCGCGGAGGATGAGCCACAACATGAACATGCGGGGTGGGATGTCTA
ACTTCTAGAGTGATGCGCTGATGGAATCGGATAGAATGGGCGAGGGCTTG
AGGTTTAAATACCACACCAGGCCAAGCAGCAGCCCGGGGGGTCTGCTTGT
GGTGGGCAACTCGTGTGCGTCGTGCGTGCCGACCGAGGGCCGCACTCGAG
GGGCAAGAAAAAACAGATTTATCTATTTTCGTTTGCTTCCTCCACTCATA
GCGAGCAGAAGTGTGTTGCGTGCCGCAGCCCGCTCCCCTAAGGAATTGCG
TGAAGTGTACTACTGCCGCTCCGCCGTTATATCCGTTGGTCAGAGATTTG
GAAGGCTCGTTCGGAAGCTGCACATCGGGGGCATCATAGAATCCCCCAGC
TCTCTCGCACCGCCCCGCGCCTCCATCAAGCTCCGCTCTGTAGCCTTCCT
CGGGGACCTCTCGTTCCATTCACCGGAAGCGTGGGCCTTCCCGTACGCTT
AGAACTACTGCATCTCCCAAGTGGACGTCGTTGTTGTAGGAGCACAATTT
CCTTTCTTTTGTGGAGTCCGCACACTGACTGTTGCGTAACAACACATACA
TCGAGGCGCGGGGCTCAATTGCCAACGATTGTGAACGCAGAAAGATACCG
TTATCATCGGAGTCTTGTTACCCCCTGTGCGTAAGAAATTGTTTTTGGAA
TCACTTCCCCCGTTGAAAAATTAACGTACCGGGGGGGGGGGATTTCGCCG
CAAAACCCAATACCCCGCGTGAAATATCAACGAATCAATTCTCAATTGGA
AACCCCTACATTCACACTTGCACACAAAAAAACAATTTCATTTATTTTCG
CTCTCAAAAGATTTTGGCGTTTCCCCTGCGAGTACGCGTAGAACCAACAA
TGACGACGAGCGTGTGGGTGGTGTAATCTCGATGTTGAATCGTTTGAACC
GGCGTGCAATGAAGAATTGTTTGATTCCGCCGGCTGAGCATCCGCGAACG
CCGCCCTTATCTGCCCCTTGCTCCCTTCGCCCCCGCCCTGCCCTCGCTTC
CTTCCCTCATCCACAATATAGACTGACCATCTTTCGAATTCCTGCAGCCA
CGATGATGGAAACCCGAGAAGCGATCGCGCCGAGGTGGTTTTGGACGCTG
TGCCCAAGCTACGTACGGCGAGTGAGTGTCTCCCCTCGTTCCCACCTCGC
TCGCCTCGCCCAGCATGGTCCGGCTCCCTCGACTATTTGCTCTCCCCCTC
CCCCAAGTTGAATACTTGAAATTATAGGGTGGATGTTCGAAAATATGGAC
GGGATTGCGTGGAATCTAAAGCAGCGGTCCCGGCGGGAAATCTGCAGTCG
AATGTGCGCGACGCGTGCCAAGTTTGCAAAGATGTTGGGTCGTGCAGTAC
GTAACAAACGTACCGCAAGACCGCAGCCACAACGCAGTGTTAGAAGTGCG
CACAGACGAAACACGTCGTCAATCAAAGGCTGCGCTTTTCTCTCCTGTGG
CTTCCTTCCCTATCCCTTCCGATGCTCGAGCGCGAGCTGGGGAGTGCGAT
GTTAAGTGTATGGATGGCAGGCCGTGGATGGCGTGGAAAGTCTTCCGACT
TTTTTGTTGCTGCAGGCACGAATTCCAAAAAACATTAAAAAAAAAAAAAA
TGGGACATGCGGTGACTTCATGCGACACTCTCCCTCCCTATCGGGTGGAT
AACGGGGTTTGAGTCCACCATTCGAACGAAGTAAAGGGCATTTGTACAGG
CACTTGGTCGAGTTTGTTATGGCAGTGCACTTTGTGGTGCTCCATCTGCA
GAATAATTCACGCCCGTACTAGCGCCTGGCCACTCCGCGCGGATATATTT
TGCTGTCAAAACTATTACCCCAGAATGCCGATGCAAAGCGATCGACTGCA
ACAGTTGATGATTATTGGTTGTGCGTGTGCGGGCAGTCGGGCGGGGGCGG
GAGGGTCGAGCAGGGCAACACATGGCAACGATATTGACCTTTCCGTGCAG
CACCCCGGCGAGATGATGTTTGTGCCGGTGTTCTGGATGCGCGCCGTACT
CAACCTGGACGACGCCACGGCTATCGTTCAGAAGTTCGTCCGCACGTATA
ACTTGGCGGAGGTAAGGAAGTCCATATCTGCAATGTTTCATGGTTTGCAC
CGTATTACTCCCAACAAATTGGGAGAAGGAGAAGCAGTACTGTCAACCGT
CGTGTAAATTTGAGCACGCGGTAGCTGGTAATTATCTTGGTATTATCTTC
GGGGAAAAACAAAAGAGCAGGAGAGTCATCGGTGCAGTTGTACTTTTCAT
GTAGAGTTCCATCGGGGTATTTCGACCGGTGTTCTCACGGCGGAGGTGTG
CACGCATGGATTGATGGTCGGGTGTGGCGCAAGCAACTATTTAATAATCA
TTTTCTTCGCCTTAAATCAACAACGTTCCAGGCACTGGAGCTCGCCGCTT
CGTAAAGCCTCGATTCACGGACGAGTGACTCGATCAGCTGGTGCTGCGTA
ACGACTTCGCGCT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig8:465460..469872+

>mRNA_P-fluviatile_contig8.14324.1 ID=mRNA_P-fluviatile_contig8.14324.1|Name=mRNA_P-fluviatile_contig8.14324.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig8:465460..469872+ (Porterinema fluviatile SAG_2381)
ATGCCGATGCAAAGCGATCGACTGCAACAGTTGATGATTATTGGTTGTGC
GTGTGCGGGCAGTCGGGCGGGGGCGGGAGGGTCGAGCAGGGCAACACATG
GCAACGATATTGACCTTTCCGTGCAGCACCCCGGCGAGATGATGTTTGTG
CCGGTGTTCTGGATGCGCGCCGTACTCAACCTGGACGACGCCACGGCTAT
CGTTCAGAAGTTCGTCCGCACGTATAACTTGGCGGAGGTAAGGAAGTCCA
TATCTGCAATGTTTCATGGTTTGCACCGTATTACTCCCAACAAATTGGGA
GAAGGAGAAGCAGTACTGTCAACCGTCGTGTAAATGCCGATGCAAAGCGA
TCGACTGCAACAGTTGATGATTATTGGTTGTGCGTGTGCGGGCAGTCGGG
CGGGGGCGGGAGGGTCGAGCAGGGCAACACATGGCAACGATATTGACCTT
TCCGTGCAGCACCCCGGCGAGATGATGTTTGTGCCGGTGTTCTGGATGCG
CGCCGTACTCAACCTGGACGACGCCACGGCTATCGTTCAGAAGTTCGTCC
GCACGTATAACTTGGCGGAGGTAAGGAAGTCCATATCTGCAATGTTTCAT
GGTTTGCACCGTATTACTCCCAACAAATTGGGAGAAGGAGAAGCAGTACT
GTCAACCGTCGTGTAA
back to top